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Conserved domains on  [gi|489742843|ref|WP_003646892|]
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MULTISPECIES: hypothetical protein [Lactobacillus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RpnC super family cl35003
Recombination-promoting DNA endonuclease RpnC/YadD [Replication, recombination and repair];
79-139 5.21e-03

Recombination-promoting DNA endonuclease RpnC/YadD [Replication, recombination and repair];


The actual alignment was detected with superfamily member COG5464:

Pssm-ID: 444215 [Multi-domain]  Cd Length: 301  Bit Score: 35.71  E-value: 5.21e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489742843  79 YEQGMQRGIKQGRAEGKK---EGKVDSAKIILENQLNNGSTLEQatEFVRNLKLISDKELEKII 139
Cdd:COG5464  235 YQELLQEGREEGRQEGREgrqEGRQEGKLELALRLLKRRFGLPL--ELIARITGLSLEQLEALG 296
 
Name Accession Description Interval E-value
RpnC COG5464
Recombination-promoting DNA endonuclease RpnC/YadD [Replication, recombination and repair];
79-139 5.21e-03

Recombination-promoting DNA endonuclease RpnC/YadD [Replication, recombination and repair];


Pssm-ID: 444215 [Multi-domain]  Cd Length: 301  Bit Score: 35.71  E-value: 5.21e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489742843  79 YEQGMQRGIKQGRAEGKK---EGKVDSAKIILENQLNNGSTLEQatEFVRNLKLISDKELEKII 139
Cdd:COG5464  235 YQELLQEGREEGRQEGREgrqEGRQEGKLELALRLLKRRFGLPL--ELIARITGLSLEQLEALG 296
fliH PRK13386
flagellar assembly protein H; Provisional
 72-99 7.45e-03

flagellar assembly protein H; Provisional


Pssm-ID: 237372 [Multi-domain]  Cd Length: 236  Bit Score: 35.00  E-value: 7.45e-03
                         10        20
                 ....*....|....*....|....*...
gi 489742843  72 QAAGKAGYEQGMQRGIKQGRAEGKKEGK 99
Cdd:PRK13386  41 QQQLMAGFQEGIQQGFDQGLEEGEEEGR 68
 
Name Accession Description Interval E-value
RpnC COG5464
Recombination-promoting DNA endonuclease RpnC/YadD [Replication, recombination and repair];
79-139 5.21e-03

Recombination-promoting DNA endonuclease RpnC/YadD [Replication, recombination and repair];


Pssm-ID: 444215 [Multi-domain]  Cd Length: 301  Bit Score: 35.71  E-value: 5.21e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489742843  79 YEQGMQRGIKQGRAEGKK---EGKVDSAKIILENQLNNGSTLEQatEFVRNLKLISDKELEKII 139
Cdd:COG5464  235 YQELLQEGREEGRQEGREgrqEGRQEGKLELALRLLKRRFGLPL--ELIARITGLSLEQLEALG 296
fliH PRK13386
flagellar assembly protein H; Provisional
 72-99 7.45e-03

flagellar assembly protein H; Provisional


Pssm-ID: 237372 [Multi-domain]  Cd Length: 236  Bit Score: 35.00  E-value: 7.45e-03
                         10        20
                 ....*....|....*....|....*...
gi 489742843  72 QAAGKAGYEQGMQRGIKQGRAEGKKEGK 99
Cdd:PRK13386  41 QQQLMAGFQEGIQQGFDQGLEEGEEEGR 68
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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