|
Name |
Accession |
Description |
Interval |
E-value |
| Ffh |
COG0541 |
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ... |
2-425 |
0e+00 |
|
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440307 [Multi-domain] Cd Length: 423 Bit Score: 781.13 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 2 AFEGLAGRLQETMNKIRGKGKVNEADVKEMMREVRLALLEADVNFKVVKQFIKTVSERAVGADVMKSLTPGQQVIKIVQE 81
Cdd:COG0541 1 MFENLSERLQGAFKKLRGKGRLTEENIKEALREVRRALLEADVNLKVVKDFIERVKERALGEEVLKSLTPGQQVIKIVHD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 82 ELTSLMGGEESKIGTADRPPTVIMMVGLQGAGKTTTSGKLANLLRKKyNRKPLLVAADIYRPAAIKQLETLGKQLDMPVF 161
Cdd:COG0541 81 ELVELLGGENEELNLAKKPPTVIMMVGLQGSGKTTTAAKLAKYLKKK-GKKPLLVAADVYRPAAIEQLKTLGEQIGVPVF 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 162 SLGDQVSPVEIAKQAIAKAKEEHLDYVIIDTAGRLHIDETLMDELKQVKEIATPTEILLVVDSMTGQDAVNVAQSFNEQL 241
Cdd:COG0541 160 PEEDGKDPVDIAKRALEYAKKNGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDETLLVVDAMTGQDAVNVAKAFNEAL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 242 EITGVVLTKLDGDTRGGAALSIRSVTGKPIKFIATGEKMEALETFHPDRMASRILGMGDVLSLIEKAQTDVDTEKMKAME 321
Cdd:COG0541 240 GLTGVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILGMGDVLSLIEKAQEAIDEEEAEKLA 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 322 QKMKDNSMTLDDFLEQLQQVKQMGPLDELLKMMPGANKMKGLDNMNVDDKQLGHIEAIIKSMTKNEKDNPDIINASRRKR 401
Cdd:COG0541 320 KKLKKGKFDLEDFLEQLQQMKKMGPLKKLLGMLPGMGKLKQLKDLDIDEKELKRIEAIINSMTPEERRNPDIINGSRKRR 399
|
410 420
....*....|....*....|....
gi 489820053 402 IARGSGRPVQEINRLLKQFAEMKK 425
Cdd:COG0541 400 IAKGSGTTVQDVNRLLKQFEQMKK 423
|
|
| ffh |
TIGR00959 |
signal recognition particle protein; This model represents Ffh (Fifty-Four Homolog), the ... |
3-429 |
0e+00 |
|
signal recognition particle protein; This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273364 [Multi-domain] Cd Length: 428 Bit Score: 651.28 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 3 FEGLAGRLQETMNKIRGKGKVNEADVKEMMREVRLALLEADVNFKVVKQFIKTVSERAVGADVMKSLTPGQQVIKIVQEE 82
Cdd:TIGR00959 1 FESLSERLQRIFKKLSGRGTITEKNIKEALREIRLALLEADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 83 LTSLMGGEESKIGTADRPPTVIMMVGLQGAGKTTTSGKLANLLRKKYNRKPLLVAADIYRPAAIKQLETLGKQLDMPVFS 162
Cdd:TIGR00959 81 LVAILGGENAELNLAKKPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 163 LGDQVSPVEIAKQAIAKAKEEHLDYVIIDTAGRLHIDETLMDELKQVKEIATPTEILLVVDSMTGQDAVNVAQSFNEQLE 242
Cdd:TIGR00959 161 LGKGQSPVEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFNERLG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 243 ITGVVLTKLDGDTRGGAALSIRSVTGKPIKFIATGEKMEALETFHPDRMASRILGMGDVLSLIEKAQTDVDTEKMKAMEQ 322
Cdd:TIGR00959 241 LTGVVLTKLDGDARGGAALSVRSVTGKPIKFIGVGEKIDDLEPFHPERMASRILGMGDILSLVEKAQEVVDEEEAKKLAE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 323 KMKDNSMTLDDFLEQLQQVKQMGPLDELLKMMPGANKMK-GLDNMNVDDKQLGHIEAIIKSMTKNEKDNPDIINASRRKR 401
Cdd:TIGR00959 321 KMKKGQFDLEDFLEQLRQIKKMGPLSSLLKMIPGMGGVKpSLSDADLDEKQFKRIEAIISSMTPEERRNPKILNPSRRKR 400
|
410 420
....*....|....*....|....*...
gi 489820053 402 IARGSGRPVQEINRLLKQFAEMKKMMKQ 429
Cdd:TIGR00959 401 IAAGSGTTVQDVNKLIKRFEQMKKMMKK 428
|
|
| PRK00771 |
PRK00771 |
signal recognition particle protein Srp54; Provisional |
6-430 |
1.02e-173 |
|
signal recognition particle protein Srp54; Provisional
Pssm-ID: 179118 [Multi-domain] Cd Length: 437 Bit Score: 493.96 E-value: 1.02e-173
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 6 LAGRLQETMNKIRGKGKVNEADVKEMMREVRLALLEADVNFKVVKQFIKTVSERAVGADVMKSLTPGQQVIKIVQEELTS 85
Cdd:PRK00771 1 LGESLRDALKKLAGKSRIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 86 LMGgEESKIGTADRPPTVIMMVGLQGAGKTTTSGKLANLLRKKyNRKPLLVAADIYRPAAIKQLETLGKQLDMPVFSLGD 165
Cdd:PRK00771 81 LLG-EETEPLVLPLKPQTIMLVGLQGSGKTTTAAKLARYFKKK-GLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 166 QVSPVEIAKQAIAKAKEEhlDYVIIDTAGRLHIDETLMDELKQVKEIATPTEILLVVDSMTGQDAVNVAQSFNEQLEITG 245
Cdd:PRK00771 159 NKDAVEIAKEGLEKFKKA--DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEAVGIGG 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 246 VVLTKLDGDTRGGAALSIRSVTGKPIKFIATGEKMEALETFHPDRMASRILGMGDVLSLIEKAQTDVDTEKMKAMEQKMK 325
Cdd:PRK00771 237 IIITKLDGTAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLGMGDLESLLEKVEEALDEEEEEKDVEKMM 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 326 DNSMTLDDFLEQLQQVKQMGPLDELLKMMPGANKMKGLDNMNVDDKQLGHIEAIIKSMTKNEKDNPDIINASRRKRIARG 405
Cdd:PRK00771 317 KGKFTLKDMYKQLEAMNKMGPLKQILQMLPGLGGKLPDEALEVTEEKLKKYKAIMDSMTEEELENPEIINASRIRRIARG 396
|
410 420
....*....|....*....|....*
gi 489820053 406 SGRPVQEINRLLKQFAEMKKMMKQM 430
Cdd:PRK00771 397 SGTTVEDVRELLKYYKMMKKAMKQL 421
|
|
| SRP_G |
cd18539 |
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ... |
102-295 |
1.06e-123 |
|
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349786 Cd Length: 193 Bit Score: 357.29 E-value: 1.06e-123
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 102 TVIMMVGLQGAGKTTTSGKLANLLRKKyNRKPLLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEIAKQAIAKAK 181
Cdd:cd18539 1 TVILLVGLQGSGKTTTAAKLALYLKKK-GKKVLLVAADVYRPAAIEQLQTLGEQVGVPVFESGDGQSPVDIAKRALEKAK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 182 EEHLDYVIIDTAGRLHIDETLMDELKQVKEIATPTEILLVVDSMTGQDAVNVAQSFNEQLEITGVVLTKLDGDTRGGAAL 261
Cdd:cd18539 80 EEGFDVVIVDTAGRLHIDEELMDELKEIKEVLNPDEVLLVVDAMTGQDAVNVAKAFNERLGLTGVVLTKLDGDARGGAAL 159
|
170 180 190
....*....|....*....|....*....|....
gi 489820053 262 SIRSVTGKPIKFIATGEKMEALETFHPDRMASRI 295
Cdd:cd18539 160 SIRHVTGKPIKFIGVGEKIEDLEPFHPDRMASRI 193
|
|
| SRP54 |
smart00962 |
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ... |
101-297 |
7.99e-111 |
|
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.
Pssm-ID: 214940 Cd Length: 197 Bit Score: 324.75 E-value: 7.99e-111
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 101 PTVIMMVGLQGAGKTTTSGKLANLLRKKYNRKPLLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEIAKQAIAKA 180
Cdd:smart00962 1 PGVILLVGPNGVGKTTTIAKLAARLKLKGGKKVLLVAADTFRAAAVEQLKTYAEILGVVPVAGGEGADPVAVAKDAVELA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 181 KEEHLDYVIIDTAGRLHIDETLMDELKQVKEIATPTEILLVVDSMTGQDAVNVAQSFNEQLEITGVVLTKLDGDTRGGAA 260
Cdd:smart00962 81 KARGYDVVLIDTAGRLHNDENLMEELKKIKRVIKPDEVLLVSDATTGQDAVEQAKAFNEALGLTGIILTKLDGTAKGGAA 160
|
170 180 190
....*....|....*....|....*....|....*..
gi 489820053 261 LSIRSVTGKPIKFIATGEKMEALETFHPDRMASRILG 297
Cdd:smart00962 161 LSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
|
|
| SRP54 |
pfam00448 |
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ... |
102-295 |
3.88e-103 |
|
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.
Pssm-ID: 459814 [Multi-domain] Cd Length: 193 Bit Score: 304.85 E-value: 3.88e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 102 TVIMMVGLQGAGKTTTSGKLANLLRKKyNRKPLLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEIAKQAIAKAK 181
Cdd:pfam00448 1 NVILLVGLQGSGKTTTIAKLAAYLKKK-GKKVLLVAADTFRAAAIEQLKQLAEKLGVPVFGSKTGADPAAVAFDAVEKAK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 182 EEHLDYVIIDTAGRLHIDETLMDELKQVKEIATPTEILLVVDSMTGQDAVNVAQSFNEQLEITGVVLTKLDGDTRGGAAL 261
Cdd:pfam00448 80 AENYDVVLVDTAGRLQNDKNLMDELKKIKRVVAPDEVLLVLDATTGQNAVNQAKAFNEAVGITGVILTKLDGDAKGGAAL 159
|
170 180 190
....*....|....*....|....*....|....
gi 489820053 262 SIRSVTGKPIKFIATGEKMEALETFHPDRMASRI 295
Cdd:pfam00448 160 SIVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
|
|
| FtsY |
COG0552 |
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ... |
3-297 |
6.31e-86 |
|
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440318 [Multi-domain] Cd Length: 303 Bit Score: 264.96 E-value: 6.31e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 3 FEGLAGRLQETMNKI--------RGKGKVNEadvkEMMREVRLALLEADVNFKVVKQFIKTVSERAVGadvmKSLTPGQQ 74
Cdd:COG0552 2 FERLKEGLSKTRSGLgeklkslfSGKKKIDE----DLLEELEELLIEADVGVETTEEIIEELRERVKR----KKLKDPEE 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 75 VIKIVQEELTSLMGGEESKIGTADRPPTVIMMVGLQGAGKTTTSGKLANLLRKKyNRKPLLVAADIYRPAAIKQLETLGK 154
Cdd:COG0552 74 LKEALKEELLEILDPVDKPLAIEEKKPFVILVVGVNGVGKTTTIGKLAHRLKAE-GKSVLLAAGDTFRAAAIEQLEVWGE 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 155 QLDMPVFSLGDQVSPVEIAKQAIAKAKEEHLDYVIIDTAGRLHIDETLMDELKQVKEIAT------PTEILLVVDSMTGQ 228
Cdd:COG0552 153 RVGVPVIAQKEGADPAAVAFDAIQAAKARGADVVIIDTAGRLHNKKNLMEELKKIKRVIKkldpdaPHEVLLVLDATTGQ 232
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489820053 229 DAVNVAQSFNEQLEITGVVLTKLDGDTRGGAALSIRSVTGKPIKFIATGEKMEALETFHPDRMASRILG 297
Cdd:COG0552 233 NALSQAKVFNEAVGVTGIVLTKLDGTAKGGVVLAIADELGIPIKFIGVGEGIDDLRPFDAEEFVDALFG 301
|
|
| SRP54_euk |
TIGR01425 |
signal recognition particle protein SRP54; This model represents examples from the eukaryotic ... |
6-426 |
3.04e-84 |
|
signal recognition particle protein SRP54; This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Pssm-ID: 273615 [Multi-domain] Cd Length: 428 Bit Score: 265.16 E-value: 3.04e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 6 LAGRLQETMNKIRGKGKVNEADVKEMMREVRLALLEADVNFKVVKQFIKTVSERAVGADVMKSLTPGQQVIKIVQEELTS 85
Cdd:TIGR01425 5 LGSSLVTALRSMSSATVIDEEVINTMLKEICTALLESDVNPKLVRQMRNNIKKKINLEDIASGINKRKLIQDAVFEELCN 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 86 LMGGEESKIGTADRPPTVIMMVGLQGAGKTTTSGKLAnLLRKKYNRKPLLVAADIYRPAAIKQLETLGKQLDMPVFSLGD 165
Cdd:TIGR01425 85 LVDPGVEAFTPKKGKTCVIMFVGLQGAGKTTTCTKLA-YYYKRRGFKPALVCADTFRAGAFDQLKQNATKAGIPFYGSYE 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 166 QVSPVEIAKQAIAKAKEEHLDYVIIDTAGRLHIDETLMDELKQVKEIATPTEILLVVDSMTGQDAVNVAQSFNEQLEITG 245
Cdd:TIGR01425 164 ESDPVKIASEGVEKFRKEKFDIIIVDTSGRHKQEKELFEEMQQVREAIKPDSIIFVMDGSIGQAAFGQAKAFKDSVEVGS 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 246 VVLTKLDGDTRGGAALSIRSVTGKPIKFIATGEKMEALETFHPDRMASRILGMGDVLSLIEKAQTDVDTEKMKAMEQKMK 325
Cdd:TIGR01425 244 VIITKLDGHAKGGGALSAVAATKSPIIFIGTGEHVDEFEIFDAEPFVSKLLGMGDLKGLIDKVQDLALNDEEKTLIEHLK 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 326 DNSMTLDDFLEQLQQVKQMGPLDELLKMMPGANK-MKGLDNMNVDDKQLGHIEAIIKSMTKNEKDNPDII---NASRRKR 401
Cdd:TIGR01425 324 EGTFTLRDWYEQFQNLLKMGPLGNIMSMIPGLSHpMMSKGNEEETSAKIKVFMTIMDSMTDRELDSTAKTmlkDPSRIRR 403
|
410 420
....*....|....*....|....*
gi 489820053 402 IARGSGRPVQEINRLLKQFAEMKKM 426
Cdd:TIGR01425 404 VARGSGRDIREVNELLEQYKLFAQM 428
|
|
| SRP_G_like |
cd03115 |
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition ... |
103-295 |
2.24e-83 |
|
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognate receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349769 [Multi-domain] Cd Length: 193 Bit Score: 254.61 E-value: 2.24e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 103 VIMMVGLQGAGKTTTSGKLANLLRKKyNRKPLLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEIAKQAIAKAKE 182
Cdd:cd03115 2 VILLVGLQGSGKTTTLAKLARYYQEK-GKKVLLIAADTFRAAAVEQLKTLAEKLGVPVFESYTGTDPASIAQEAVEKAKL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 183 EHLDYVIIDTAGRLHIDETLMDELKQVKEIATPTEILLVVDSMTGQDAVNVAQSFNEQLEITGVVLTKLDGDTRGGAALS 262
Cdd:cd03115 81 EGYDVLLVDTAGRLQKDEPLMEELKKVKEVESPDEVLLVLDATTGQEALSQAKAFNEAVGLTGVILTKLDGTAKGGAALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 489820053 263 IRSVTGKPIKFIATGEKMEALETFHPDRMASRI 295
Cdd:cd03115 161 IVAETKKPIKFIGVGEKPEDLEPFDPERFVSAL 193
|
|
| PRK10416 |
PRK10416 |
signal recognition particle-docking protein FtsY; Provisional |
4-297 |
2.92e-74 |
|
signal recognition particle-docking protein FtsY; Provisional
Pssm-ID: 236686 [Multi-domain] Cd Length: 318 Bit Score: 235.38 E-value: 2.92e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 4 EGLA---GRLQETMNKIRGKGKVNEaDVKEmmrEVRLALLEADVNFKVVKQFIKTVSERAVGadvmKSLTPGQQVIKIVQ 80
Cdd:PRK10416 22 KGLSktrENFGEGINGLFAKKKIDE-DLLE---ELEELLIEADVGVETTEEIIEELRERVKR----KNLKDPEELKELLK 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 81 EELTSLMGGEESKIGTADRPPTVIMMVGLQGAGKTTTSGKLANLLrKKYNRKPLLVAADIYRPAAIKQLETLGKQLDMPV 160
Cdd:PRK10416 94 EELAEILEPVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKY-KAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPV 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 161 FSLGDQVSPVEIAKQAIAKAKEEHLDYVIIDTAGRLHIDETLMDELKQVKEI------ATPTEILLVVDSMTGQDAVNVA 234
Cdd:PRK10416 173 IAQKEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVikkadpDAPHEVLLVLDATTGQNALSQA 252
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489820053 235 QSFNEQLEITGVVLTKLDGDTRGGAALSIRSVTGKPIKFIATGEKMEALETFHPDRMASRILG 297
Cdd:PRK10416 253 KAFHEAVGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDAEEFVDALLG 315
|
|
| ftsY |
TIGR00064 |
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ... |
27-296 |
5.07e-70 |
|
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 272883 [Multi-domain] Cd Length: 277 Bit Score: 223.29 E-value: 5.07e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 27 DVKEMMREVRLALLEADVNFKVVKQFIKTVSERAVGadvmKSLTPGQQVIKIVQEEL-TSLMGGEESKIGTADRP----P 101
Cdd:TIGR00064 2 DDEDFFEELEEILLESDVGYEVVEKIIEALKKELKG----KKVKDAEKLKEILKEYLkEILKEDLLKNTDLELIVeenkP 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 102 TVIMMVGLQGAGKTTTSGKLANLLRKKyNRKPLLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEIAKQAIAKAK 181
Cdd:TIGR00064 78 NVILFVGVNGVGKTTTIAKLANKLKKQ-GKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAK 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 182 EEHLDYVIIDTAGRLHIDETLMDELKQVKEIAT------PTEILLVVDSMTGQDAVNVAQSFNEQLEITGVVLTKLDGDT 255
Cdd:TIGR00064 157 ARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKkvdkdaPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTKLDGTA 236
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 489820053 256 RGGAALSIRSVTGKPIKFIATGEKMEALETFHPDRMASRIL 296
Cdd:TIGR00064 237 KGGIILSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEALF 277
|
|
| PRK14974 |
PRK14974 |
signal recognition particle-docking protein FtsY; |
25-297 |
6.09e-69 |
|
signal recognition particle-docking protein FtsY;
Pssm-ID: 237875 [Multi-domain] Cd Length: 336 Bit Score: 222.54 E-value: 6.09e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 25 EADVKEMMREVRLALLEADVNFKVVKQFIKTVSERAVGADVMKSLTPGQQVIKIVQEELTSLMG-----GEESKIGTADR 99
Cdd:PRK14974 60 EKDIEDLLEELELELLESDVALEVAEEILESLKEKLVGKKVKRGEDVEEIVKNALKEALLEVLSvgdlfDLIEEIKSKGK 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 100 PpTVIMMVGLQGAGKTTTSGKLANLLRKKyNRKPLLVAADIYRPAAIKQLETLGKQLDMPVFSlGDQVS-PVEIAKQAIA 178
Cdd:PRK14974 140 P-VVIVFVGVNGTGKTTTIAKLAYYLKKN-GFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIK-HKYGAdPAAVAYDAIE 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 179 KAKEEHLDYVIIDTAGRLHIDETLMDELKQVKEIATPTEILLVVDSMTGQDAVNVAQSFNEQLEITGVVLTKLDGDTRGG 258
Cdd:PRK14974 217 HAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKVDADAKGG 296
|
250 260 270
....*....|....*....|....*....|....*....
gi 489820053 259 AALSIRSVTGKPIKFIATGEKMEALETFHPDRMASRILG 297
Cdd:PRK14974 297 AALSIAYVIGKPILFLGVGQGYDDLIPFDPDWFVDKLLG 335
|
|
| SRP54_G |
cd17875 |
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ... |
103-295 |
4.91e-67 |
|
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Pssm-ID: 349784 Cd Length: 193 Bit Score: 212.44 E-value: 4.91e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 103 VIMMVGLQGAGKTTTSGKLANLLRKKyNRKPLLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEIAKQAIAKAKE 182
Cdd:cd17875 2 VIMFVGLQGSGKTTTAAKLAYYYQKK-GYKVGLVCADTFRAGAFDQLKQNATKARVPFYGSYTEKDPVKIAKEGVEKFKK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 183 EHLDYVIIDTAGRLHIDETLMDELKQVKEIATPTEILLVVDSMTGQDAVNVAQSFNEQLEITGVVLTKLDGDTRGGAALS 262
Cdd:cd17875 81 EKFDIIIVDTSGRHKQEEELFEEMKQISDAVKPDEVILVIDASIGQAAEDQAKAFKEAVDIGSVIITKLDGHAKGGGALS 160
|
170 180 190
....*....|....*....|....*....|...
gi 489820053 263 IRSVTGKPIKFIATGEKMEALETFHPDRMASRI 295
Cdd:cd17875 161 AVAATGAPIIFIGTGEHIDDLEPFDPKRFVSRL 193
|
|
| FtsY |
cd17874 |
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ... |
102-295 |
9.41e-67 |
|
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.
Pssm-ID: 349783 Cd Length: 199 Bit Score: 212.05 E-value: 9.41e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 102 TVIMMVGLQGAGKTTTSGKLANLLrKKYNRKPLLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEIAKQAIAKAK 181
Cdd:cd17874 1 FVILFVGVNGVGKTTTIGKLAHYL-KNQGKKVVLAAGDTFRAAAVEQLEEWAERLGVPVISQNEGADPAAVAFDAIQAAK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 182 EEHLDYVIIDTAGRLHIDETLMDELKQVKEIAT------PTEILLVVDSMTGQDAVNVAQSFNEQLEITGVVLTKLDGDT 255
Cdd:cd17874 80 ARGIDVVLIDTAGRLHTKKNLMEELKKIKRVIKkkdpeaPHEVLLVLDATTGQNALEQAKEFNEAVGLTGIILTKLDGTA 159
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 489820053 256 RGGAALSIRSVTGKPIKFIATGEKMEALETFHPDRMASRI 295
Cdd:cd17874 160 KGGIVLSIADELKIPVKFVGVGEGIDDLRPFDPEAFVEAL 199
|
|
| SRP_SPB |
pfam02978 |
Signal peptide binding domain; |
328-425 |
2.37e-41 |
|
Signal peptide binding domain;
Pssm-ID: 460771 [Multi-domain] Cd Length: 95 Bit Score: 142.15 E-value: 2.37e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 328 SMTLDDFLEQLQQVKQMGPLDELLKMMPGankMKGLDNMNVDDKQLGHIEAIIKSMTKNEKDNPDIINASRRKRIARGSG 407
Cdd:pfam02978 1 KFTLRDFLEQLQQIKKMGPLSKILSMIPG---MGKKDDDIDSEKKLKRIEAIIDSMTPKERDNPDIINASRKRRIARGSG 77
|
90
....*....|....*...
gi 489820053 408 RPVQEINRLLKQFAEMKK 425
Cdd:pfam02978 78 TSVQEVNRLLKQFKQMKK 95
|
|
| FlhF |
COG1419 |
Flagellar biosynthesis GTPase FlhF [Cell motility]; |
10-297 |
5.33e-41 |
|
Flagellar biosynthesis GTPase FlhF [Cell motility];
Pssm-ID: 441029 [Multi-domain] Cd Length: 361 Bit Score: 149.63 E-value: 5.33e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 10 LQETMNKIRGKGKVNEADVKEMMREVRLALLEADVNFKVVKQFIKTVSERAvgadvmksltPGQQVIKIVQEELTSLMGG 89
Cdd:COG1419 86 LKELLEEQLSGLAGESARLPPELAELLERLLEAGVSPELARELLEKLPEDL----------SAEEAWRALLEALARRLPV 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 90 EESKIGTadrPPTVIMMVGLQGAGKTTTSGKLANLLRKKYNRKPLLVAADIYRPAAIKQLETLGKQLDMPVFSLGDqvsP 169
Cdd:COG1419 156 AEDPLLD---EGGVIALVGPTGVGKTTTIAKLAARFVLRGKKKVALITTDTYRIGAVEQLKTYARILGVPVEVAYD---P 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 170 VEIAKqaiAKAKEEHLDYVIIDTAGRLHIDETLMDELKQVKEIATPTEILLVVdSMT--GQDAVNVAQSFnEQLEITGVV 247
Cdd:COG1419 230 EELKE---ALERLRDKDLVLIDTAGRSPRDPELIEELKALLDAGPPIEVYLVL-SATtkYEDLKEIVEAF-SSLGLDGLI 304
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 489820053 248 LTKLDGDTRGGAALSIRSVTGKPIKFIATGEKM-EALETFHPDRMASRILG 297
Cdd:COG1419 305 LTKLDETASLGSILNLLIRTGLPLSYITNGQRVpEDIEVADPERLARLLLG 355
|
|
| SRalpha_C |
cd17876 |
C-terminal domain of signal recognition particle receptor alpha subunit; The ... |
103-289 |
1.88e-38 |
|
C-terminal domain of signal recognition particle receptor alpha subunit; The signal-recognition particle (SRP) receptor (SR) alpha-subunit (SRalpha) of the eukaryotic SR interacts with the signal-recognition particle (SRP) and is essential for the co-translational membrane targeting of proteins.
Pssm-ID: 349785 Cd Length: 204 Bit Score: 138.13 E-value: 1.88e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 103 VIMMVGLQGAGKTTTSGKLANLLrKKYNRKPLLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEIAKQAIAKAKE 182
Cdd:cd17876 2 VIVFCGVNGVGKSTNLAKIAYWL-LSNGFRVLIAACDTFRSGAVEQLRTHARRLGVELYEKGYGKDPAAVAKEAIKYARD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 183 EHLDYVIIDTAGRLHIDETLMDELKQVKEIATPTEILLVVDSMTGQDAVNVAQSFNEQL----------EITGVVLTKLD 252
Cdd:cd17876 81 QGFDVVLIDTAGRMQNNEPLMRALAKLIKENNPDLVLFVGEALVGNDAVDQLKKFNQALadyspsdnprLIDGIVLTKFD 160
|
170 180 190
....*....|....*....|....*....|....*...
gi 489820053 253 G-DTRGGAALSIRSVTGKPIKFIATGEKMEALETFHPD 289
Cdd:cd17876 161 TiDDKVGAALSMVYATGQPIVFVGTGQTYTDLKKLNVK 198
|
|
| FlhF |
cd17873 |
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP) ... |
103-295 |
7.34e-32 |
|
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP)-type GTPase that is essential for the placement and assembly of polar flagella. It is similar to the 54 kd subunit (SRP54) of the signal recognition particle (SRP) that mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR).
Pssm-ID: 349782 [Multi-domain] Cd Length: 189 Bit Score: 119.96 E-value: 7.34e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 103 VIMMVGLQGAGKTTTSGKLANLLRKKYNRKPLLVAADIYRPAAIKQLETLGKQLDMPVfslgDQVSPVEIAKQAIAKAKE 182
Cdd:cd17873 2 VIALVGPTGVGKTTTLAKLAARYVLKKGKKVALITTDTYRIGAVEQLKTYAEIMGIPV----EVAEDPEDLADALERLSD 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 183 EhlDYVIIDTAGRLHIDETLMDELKQVKEIATPTEILLVVDSMT-GQDAVNVAQSFnEQLEITGVVLTKLDGDTRGGAAL 261
Cdd:cd17873 78 R--DLILIDTAGRSPRDKEQLEELKELLGAGEDIEVHLVLSATTkAKDLKEIIERF-SPLGYRGLILTKLDETTSLGSVL 154
|
170 180 190
....*....|....*....|....*....|....*
gi 489820053 262 SIRSVTGKPIKFIATGEKM-EALETFHPDRMASRI 295
Cdd:cd17873 155 SVLAESQLPVSYVTTGQRVpEDIEVASPLRLARLL 189
|
|
| flhF |
PRK05703 |
flagellar biosynthesis protein FlhF; |
39-297 |
2.98e-23 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235570 [Multi-domain] Cd Length: 424 Bit Score: 101.12 E-value: 2.98e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 39 LLEADVNFKVVKQFIKTVSERAVGADVMksltpgqqVIKIVQEELTSLMGGEESKIGTADRpptVIMMVGLQGAGKTTTS 118
Cdd:PRK05703 170 LKRSGLSPEIAEKLLKLLLEHMPPRERT--------AWRYLLELLANMIPVRVEDILKQGG---VVALVGPTGVGKTTTL 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 119 GKLANLLRKKYNRKPL-LVAADIYRPAAIKQLETLGKQLDMPVfslgDQVSPVEIAKQAIAKAKeeHLDYVIIDTAGRLH 197
Cdd:PRK05703 239 AKLAARYALLYGKKKVaLITLDTYRIGAVEQLKTYAKIMGIPV----EVVYDPKELAKALEQLR--DCDVILIDTAGRSQ 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 198 IDETLMDELKQ-VKEIATPTEILLVVdSMTGQ--DAVNVAQSFNeQLEITGVVLTKLDgDTRG-GAALSIRSVTGKPIKF 273
Cdd:PRK05703 313 RDKRLIEELKAlIEFSGEPIDVYLVL-SATTKyeDLKDIYKHFS-RLPLDGLIFTKLD-ETSSlGSILSLLIESGLPISY 389
|
250 260
....*....|....*....|....*
gi 489820053 274 IATGEKM-EALETFHPDRMASRILG 297
Cdd:PRK05703 390 LTNGQRVpDDIKVANPEELVRLLLG 414
|
|
| SRP54_N |
pfam02881 |
SRP54-type protein, helical bundle domain; |
6-83 |
6.42e-22 |
|
SRP54-type protein, helical bundle domain;
Pssm-ID: 460734 [Multi-domain] Cd Length: 75 Bit Score: 89.06 E-value: 6.42e-22
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489820053 6 LAGRLQETMNKIRGKGKVNEADVKEMMREVRLALLEADVNFKVVKQFIKTVSERAVGadvMKSLTPGQQVIKIVQEEL 83
Cdd:pfam02881 1 LGEKLSSLFKGLRGKGKIDEEDLEEALKELEEALLEADVGVEVVKKIIERLREKAVG---EKKLKPPQEVKKILKEEL 75
|
|
| SRP54_N |
smart00963 |
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle ... |
10-87 |
6.57e-20 |
|
SRP54-type protein, helical bundle domain; This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.
Pssm-ID: 214941 [Multi-domain] Cd Length: 77 Bit Score: 83.37 E-value: 6.57e-20
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489820053 10 LQETMNKIRGKGKVNEADVKEMMREVRLALLEADVNFKVVKQFIKTVSERAVGaDVMKSLTPGQQVIKIVQEELTSLM 87
Cdd:smart00963 1 LSKALGKLLGELFLTEKDDEELLEELEEALLEADVGVEVVKEIIERVKEKAKG-EVLKGLTPKQEVKKILKEELVKIL 77
|
|
| flhF |
PRK14722 |
flagellar biosynthesis regulator FlhF; Provisional |
103-280 |
7.79e-15 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173185 [Multi-domain] Cd Length: 374 Bit Score: 75.53 E-value: 7.79e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 103 VIMMVGLQGAGKTTTSGKLANLLRKKYN-RKPLLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSpveiAKQAIAKAK 181
Cdd:PRK14722 139 VFALMGPTGVGKTTTTAKLAARCVMRFGaSKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGD----LQLALAELR 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 182 EEHLdyVIIDTAGRLHIDETLMDELKQVKEIATPTEILLVVDSMTGQDAVN-VAQSFNEQL--------EITGVVLTKLD 252
Cdd:PRK14722 215 NKHM--VLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNeVVQAYRSAAgqpkaalpDLAGCILTKLD 292
|
170 180
....*....|....*....|....*...
gi 489820053 253 GDTRGGAALSIRSVTGKPIKFIATGEKM 280
Cdd:PRK14722 293 EASNLGGVLDTVIRYKLPVHYVSTGQKV 320
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
103-301 |
4.87e-14 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 74.26 E-value: 4.87e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 103 VIMMVGLQGAGKTTTSGKLANLLRKKYN-RKPLLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSPVEIAkqaiakak 181
Cdd:PRK12727 352 VIALVGPTGAGKTTTIAKLAQRFAAQHApRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLL-------- 423
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 182 EEHLDY--VIIDTAGRLHIDETLMDELKQVKEIATPTEILLVVDSMTGQDAVNVAQSFNEQlEITGVVLTKLDGDTRGGA 259
Cdd:PRK12727 424 ERLRDYklVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLDEVVRRFAHA-KPQGVVLTKLDETGRFGS 502
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 489820053 260 ALSIRSVTGKPIKFIATGEKMEalETFHPDRMASRILGMGDV 301
Cdd:PRK12727 503 ALSVVVDHQMPITWVTDGQRVP--DDLHRANAASLVLRLEDL 542
|
|
| FlhF |
TIGR03499 |
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility] |
33-194 |
8.96e-14 |
|
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274609 [Multi-domain] Cd Length: 282 Bit Score: 71.21 E-value: 8.96e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 33 REVRLALLEADVNFKVVKQFIKTVSERAVGADVMKSLTpgQQVIKIVQEELTSlmggeeskiGTADRPPTVIMMVGLQGA 112
Cdd:TIGR03499 137 AKLYERLLEAGVSEELARELLEKLPEDADAEDAWRWLR--EALEGMLPVKPEE---------DPILEQGGVIALVGPTGV 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 113 GKTTTSGKLANLLRKKYNRKPL-LVAADIYRPAAIKQLETLGKQLDMPVFSLGDqvsPVEIAKqaiAKAKEEHLDYVIID 191
Cdd:TIGR03499 206 GKTTTLAKLAARFALEHGKKKVaLITTDTYRIGAVEQLKTYAEILGIPVKVARD---PKELRE---ALDRLRDKDLILID 279
|
...
gi 489820053 192 TAG 194
Cdd:TIGR03499 280 TAG 282
|
|
| flhF |
PRK14723 |
flagellar biosynthesis regulator FlhF; Provisional |
103-284 |
2.77e-13 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 237802 [Multi-domain] Cd Length: 767 Bit Score: 72.14 E-value: 2.77e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 103 VIMMVGLQGAGKTTTSGKLANLLRKKYNRKPL-LVAADIYRPAAIKQLETLGKQLDMPVFSLGDqvspVEIAKQAIAKAK 181
Cdd:PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVAREGADQLaLLTTDSFRIGALEQLRIYGRILGVPVHAVKD----AADLRFALAALG 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 182 EEHLdyVIIDTAGRLHIDETLMDELKQVKEIATPTEILLVVDSMTGQDAVN-VAQSFNEQL--EITGVVLTKLDGDTRGG 258
Cdd:PRK14723 263 DKHL--VLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNeVVHAYRHGAgeDVDGCIITKLDEATHLG 340
|
170 180
....*....|....*....|....*..
gi 489820053 259 AALSIRSVTGKPIKFIATGEKM-EALE 284
Cdd:PRK14723 341 PALDTVIRHRLPVHYVSTGQKVpEHLE 367
|
|
| flhF |
PRK11889 |
flagellar biosynthesis protein FlhF; |
73-281 |
3.16e-13 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 183360 [Multi-domain] Cd Length: 436 Bit Score: 71.25 E-value: 3.16e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 73 QQVIKIVQEELTSLMGGEEskigTADRPPTVIMMVGLQGAGKTTTSGKLANLLRKKynRKPL-LVAADIYRPAAIKQLET 151
Cdd:PRK11889 217 EEVIEYILEDMRSHFNTEN----VFEKEVQTIALIGPTGVGKTTTLAKMAWQFHGK--KKTVgFITTDHSRIGTVQQLQD 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 152 LGKQLDMPVFSLGDQVSpveiAKQAIAKAKEE-HLDYVIIDTAGRLHIDETLMDELKQVKEIATPTEILLVVD-SMTGQD 229
Cdd:PRK11889 291 YVKTIGFEVIAVRDEAA----MTRALTYFKEEaRVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSaSMKSKD 366
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 489820053 230 AVNVAQSFNEqLEITGVVLTKLDGDTRGGAALSIRSVTGKPIKFIATGEKME 281
Cdd:PRK11889 367 MIEIITNFKD-IHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDVK 417
|
|
| flhF |
PRK06731 |
flagellar biosynthesis regulator FlhF; Validated |
73-281 |
2.06e-12 |
|
flagellar biosynthesis regulator FlhF; Validated
Pssm-ID: 75717 [Multi-domain] Cd Length: 270 Bit Score: 67.08 E-value: 2.06e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 73 QQVIKIVQEELTSLMGGEEskigTADRPPTVIMMVGLQGAGKTTTSGKLANLLRKKyNRKPLLVAADIYRPAAIKQLETL 152
Cdd:PRK06731 51 EEVIEYILEDMSSHFNTEN----VFEKEVQTIALIGPTGVGKTTTLAKMAWQFHGK-KKTVGFITTDHSRIGTVQQLQDY 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 153 GKQLDMPVFSLGDQVSpveiAKQAIAKAKEE-HLDYVIIDTAGRLHIDETLMDELKQVKEIATPTEILLVVD-SMTGQDA 230
Cdd:PRK06731 126 VKTIGFEVIAVRDEAA----MTRALTYFKEEaRVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSaSMKSKDM 201
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 489820053 231 VNVAQSFNEqLEITGVVLTKLDGDTRGGAALSIRSVTGKPIKFIATGEKME 281
Cdd:PRK06731 202 IEIITNFKD-IHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDVK 251
|
|
| PRK12726 |
PRK12726 |
flagellar biosynthesis regulator FlhF; Provisional |
103-297 |
7.98e-12 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183704 [Multi-domain] Cd Length: 407 Bit Score: 66.68 E-value: 7.98e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 103 VIMMVGLQGAGKTTTSGKLANLLRKKyNRKPLLVAADIYRPAAIKQLETLGKQLDMPVFSlgdQVSPVEIAKQAIAKAKE 182
Cdd:PRK12726 208 IISLIGQTGVGKTTTLVKLGWQLLKQ-NRTVGFITTDTFRSGAVEQFQGYADKLDVELIV---ATSPAELEEAVQYMTYV 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 183 EHLDYVIIDTAGRLHIDETLMDELKQVKEIATPTEILLVVDS-MTGQDAVNVAQSFNEqLEITGVVLTKLDGDTRGGAAL 261
Cdd:PRK12726 284 NCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSgMKSADVMTILPKLAE-IPIDGFIITKMDETTRIGDLY 362
|
170 180 190
....*....|....*....|....*....|....*...
gi 489820053 262 SIRSVTGKPIKFIATGEKMEAlETFHPDR--MASRILG 297
Cdd:PRK12726 363 TVMQETNLPVLYMTDGQNITE-NIFRPKSrwLAERFVG 399
|
|
| PRK12724 |
PRK12724 |
flagellar biosynthesis regulator FlhF; Provisional |
49-280 |
2.05e-11 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183703 [Multi-domain] Cd Length: 432 Bit Score: 65.37 E-value: 2.05e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 49 VKQFIKTVSERAVGADVMKSLTPGQQVIKIVQEELTSlmggeESKI--GTADRPPTVIMMVGLQGAGKTTTSGKLANLLR 126
Cdd:PRK12724 174 VEEMASKLEERLSPVDQGRNHNVTERAVTYLEERVSV-----DSDLfsGTGKNQRKVVFFVGPTGSGKTTSIAKLAAKYF 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 127 KKYNRKPLLVAADIYRPAAIKQLETLGKQLDMPVFSLGDqvspVEIAKQAIAKAKEEhldYVIIDTAGRLHIDETLMDEL 206
Cdd:PRK12724 249 LHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKD----IKKFKETLARDGSE---LILIDTAGYSHRNLEQLERM 321
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489820053 207 KQVKEI---ATPTEILLVVDSMTGQDAVNVAQSFNEQLEITGVVLTKLDGDTRGGAALSIRSVTGKPIKFIATGEKM 280
Cdd:PRK12724 322 QSFYSCfgeKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLDEADFLGSFLELADTYSKSFTYLSVGQEV 398
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
100-209 |
8.70e-10 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 57.00 E-value: 8.70e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 100 PPTVIMMVGLQGAGKTTTSGKLANLLrKKYNRKPLLVAADIYRPAAIKQLETLGkqldmpVFSLGDQVSPVEIAKQAIAK 179
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALAREL-GPPGGGVIYIDGEDILEEVLDQLLLII------VGGKKASGSGELRLRLALAL 73
|
90 100 110
....*....|....*....|....*....|
gi 489820053 180 AKEEHLDYVIIDTAGRLHIDETLMDELKQV 209
Cdd:smart00382 74 ARKLKPDVLILDEITSLLDAEQEALLLLLE 103
|
|
| flhF |
PRK14721 |
flagellar biosynthesis regulator FlhF; Provisional |
103-280 |
8.64e-09 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 173184 [Multi-domain] Cd Length: 420 Bit Score: 57.27 E-value: 8.64e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 103 VIMMVGLQGAGKTTTSGKLANLLRKKYN-RKPLLVAADIYRPAAIKQLETLGKQLDMPVFSLGDqvspVEIAKQAIAKAK 181
Cdd:PRK14721 193 VYALIGPTGVGKTTTTAKLAARAVIRHGaDKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKD----IADLQLMLHELR 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 182 EEHLdyVIIDTAGRLHIDETLMDELKQVKEIATPTEILLVVDSMTGQDAVNVAQSFNEQLEITGVVLTKLDGDTRGGAAL 261
Cdd:PRK14721 269 GKHM--VLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQGHGIHGCIITKVDEAASLGIAL 346
|
170
....*....|....*....
gi 489820053 262 SIRSVTGKPIKFIATGEKM 280
Cdd:PRK14721 347 DAVIRRKLVLHYVTNGQKV 365
|
|
| PRK12723 |
PRK12723 |
flagellar biosynthesis regulator FlhF; Provisional |
101-278 |
1.55e-08 |
|
flagellar biosynthesis regulator FlhF; Provisional
Pssm-ID: 183702 [Multi-domain] Cd Length: 388 Bit Score: 56.45 E-value: 1.55e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 101 PTVIMMVGLQGAGKTTTSGKLANLLRKKYNRKPL---LVAADIYRPAAIKQLETLGKQLDMPVfslgDQVSPVEIAKQAI 177
Cdd:PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLnikIITIDNYRIGAKKQIQTYGDIMGIPV----KAIESFKDLKEEI 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 178 AKAKEehLDYVIIDTAGRLHIDETLMDELKQ-VKEIATPTEILLVVDSMT-GQDAVNVAQSFnEQLEITGVVLTKLDGDT 255
Cdd:PRK12723 250 TQSKD--FDLVLVDTIGKSPKDFMKLAEMKElLNACGRDAEFHLAVSSTTkTSDVKEIFHQF-SPFSYKTVIFTKLDETT 326
|
170 180
....*....|....*....|...
gi 489820053 256 RGGAALSIRSVTGKPIKFIATGE 278
Cdd:PRK12723 327 CVGNLISLIYEMRKEVSYVTDGQ 349
|
|
| CbiA |
pfam01656 |
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid ... |
111-257 |
7.06e-06 |
|
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyze amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.
Pssm-ID: 426369 [Multi-domain] Cd Length: 228 Bit Score: 46.96 E-value: 7.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 111 GAGKTTTSGKLANLLRKKyNRKPLLVAADI------------------------------YRPAAIKQLETLGKQLDMP- 159
Cdd:pfam01656 9 GVGKTTLAANLARALARR-GLRVLLIDLDPqsnnssveglegdiapalqalaeglkgrvnLDPILLKEKSDEGGLDLIPg 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 160 --VFSLGDQVSPVEIAKQAIAKAKE---EHLDYVIIDTAGRLHidETLMDELKQVKEIATPT--EILLVVD-SMTGQDAV 231
Cdd:pfam01656 88 niDLEKFEKELLGPRKEERLREALEalkEDYDYVIIDGAPGLG--ELLRNALIAADYVIIPLepEVILVEDaKRLGGVIA 165
|
170 180
....*....|....*....|....*..
gi 489820053 232 NVAQSFNEQ-LEITGVVLTKLDGDTRG 257
Cdd:pfam01656 166 ALVGGYALLgLKIIGVVLNKVDGDNHG 192
|
|
| flhF |
PRK06995 |
flagellar biosynthesis protein FlhF; |
103-279 |
1.22e-05 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 235904 [Multi-domain] Cd Length: 484 Bit Score: 47.65 E-value: 1.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 103 VIMMVGLQGAGKTTTSGKLAN--LLRKKyNRKPLLVAADIYRPAAIKQLETLGKQLDMPVFSLGDQVSpveiAKQAIAKA 180
Cdd:PRK06995 258 VFALMGPTGVGKTTTTAKLAArcVMRHG-ASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAAD----LRLALSEL 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 181 KEEHLdyVIIDTAGRLHIDETLMDELKQVKEIATPTEILLVVDSMTGQDAVN-VAQSF-NEQLEitGVVLTKLDGDTRGG 258
Cdd:PRK06995 333 RNKHI--VLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNeVVQAYrGPGLA--GCILTKLDEAASLG 408
|
170 180
....*....|....*....|....
gi 489820053 259 AALS--IRsvtGK-PIKFIATGEK 279
Cdd:PRK06995 409 GALDvvIR---YKlPLHYVSNGQR 429
|
|
| SIMIBI |
cd01983 |
SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal ... |
103-250 |
2.41e-04 |
|
SIMIBI (signal recognition particle, MinD and BioD)-class NTPases; SIMIBI (after signal recognition particle, MinD, and BioD), consists of signal recognition particle (SRP) GTPases, the assemblage of MinD-like ATPases, which are involved in protein localization, chromosome partitioning, and membrane transport, and a group of metabolic enzymes with kinase or related phosphate transferase activity. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Pssm-ID: 349751 [Multi-domain] Cd Length: 107 Bit Score: 40.49 E-value: 2.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 103 VIMMVGLQ-GAGKTTTSGKLANLLrkkynrkpllvAADIYRPAAIKqletlgkqLDmpvfslgdqvspveiakqaiakak 181
Cdd:cd01983 2 VIAVTGGKgGVGKTTLAAALAVAL-----------AAKGYKVLLID--------LD------------------------ 38
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489820053 182 eehlDYVIIDTAGRLHIDETLM--DELKQVKEiatPTEILLVVDSMTG--QDAVNVAQSFNEQLEI---TGVVLTK 250
Cdd:cd01983 39 ----DYVLIDGGGGLETGLLLGtiVALLALKK---ADEVIVVVDPELGslLEAVKLLLALLLLGIGirpDGIVLNK 107
|
|
| AAA_17 |
pfam13207 |
AAA domain; |
107-224 |
1.41e-03 |
|
AAA domain;
Pssm-ID: 463810 [Multi-domain] Cd Length: 136 Bit Score: 38.76 E-value: 1.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 107 VGLQGAGKTTTSGKLAnllrKKYNrKPLLVAADIYRPAAIKqlETLGKQLDMpvFSLGDQVSPVEIAKQAIAKAKEEHL- 185
Cdd:pfam13207 1 TGVPGSGKTTQLKKLA----EKLG-FPHISAGDLLREEAKE--RGLVEDRDE--MRKLPLEPQKELQKLAAERIAEEAGe 71
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 489820053 186 DYVIIDTAGR-LHIDETLMDELKQVKEIATPTEILLVVDS 224
Cdd:pfam13207 72 GGVIVDGHPRiKTPAGYLPGLPVEVLRELKPDAIILLEAD 111
|
|
| Grc3 |
COG1341 |
Polynucleotide 5'-kinase, involved in rRNA processing [Translation, ribosomal structure and ... |
97-194 |
5.18e-03 |
|
Polynucleotide 5'-kinase, involved in rRNA processing [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440952 Cd Length: 353 Bit Score: 38.85 E-value: 5.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 97 ADRPPTVIMMVGLQGAGKTTTSGKLANLLRKKyNRKPLLVAADIYR-----PAAIkqleTLGKqLDMPVFSLGD------ 165
Cdd:COG1341 31 LSSGPGRIMVLGPVDSGKSTLTTLLANKLLAE-GLKVAIIDADVGQsdlgpPTTV----SLGL-VREPVLSLSElkaekl 104
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 489820053 166 ----QVSPVEIAKQAIA-------KAKEEHLDYVIIDTAG 194
Cdd:COG1341 105 rfvgSISPSGHLLRIVAgvkrlveRAKERGADRIVIDTDG 144
|
|
| AAA_26 |
pfam13500 |
AAA domain; This domain is found in a number of proteins involved in cofactor biosynthesis ... |
104-271 |
9.41e-03 |
|
AAA domain; This domain is found in a number of proteins involved in cofactor biosynthesis such as dethiobiotin synthase and cobyric acid synthase. This domain contains a P-loop motif.
Pssm-ID: 433259 [Multi-domain] Cd Length: 198 Bit Score: 37.24 E-value: 9.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 104 IMMVGL-QGAGKTTTSGKLANLLRKKYNR----KPllVAADIYR---PAAIKQLETLGKQLDMPV-FSLGDQVSPVEIAK 174
Cdd:pfam13500 3 LFVTGTdTGVGKTVVSLGLARALKRRGVKvgywKP--VQTGLVEdgdSELVKRLLGLDQSYEDPEpFRLSAPLSPHLAAR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820053 175 QA--------IAKAKEEHLDYVIIDTAGRLH---IDETLMDELkqVKEIATPteILLVVDSMTG--QDAVNVAQSF-NEQ 240
Cdd:pfam13500 81 QEgvtidlekIIYELPADADPVVVEGAGGLLvpiNEDLLNADI--AANLGLP--VILVARGGLGtiNHTLLTLEALrQRG 156
|
170 180 190
....*....|....*....|....*....|.
gi 489820053 241 LEITGVVLTKLDGDTRggaALSIRSVTGKPI 271
Cdd:pfam13500 157 IPVLGVILNGVPNPEN---VRTIFAFGGVPV 184
|
|
| |
