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Conserved domains on  [gi|489820802|ref|WP_003724605|]
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DUF3116 family protein [Listeria monocytogenes]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3116 super family cl12853
Protein of unknown function (DUF3116); This family of proteins with unknown function appears ...
 1-83 4.21e-27

Protein of unknown function (DUF3116); This family of proteins with unknown function appears to be restricted to Bacillales.


The actual alignment was detected with superfamily member pfam11313:

Pssm-ID: 402765  Cd Length: 84  Bit Score: 93.91  E-value: 4.21e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820802   1 MEFEDEKLLREVLLFAGSVDTKINDMSLEVIDFGNLRDYTKNEVLLTLYWLEENGFLTRNNN-IAEKRYTLTLKGELLYD 79
Cdd:pfam11313  1 MEEPTNALILQVLSAVKDPNFTMDNLTFESFDFDSLADYTKNELLYTLYWLEWNGYILRMENsNNKKRYRLTEKGKLLYR 80


                 ....
gi 489820802  80 RFSQ 83
Cdd:pfam11313 81 KLKN 84
 
Name Accession Description Interval E-value
DUF3116 pfam11313
Protein of unknown function (DUF3116); This family of proteins with unknown function appears ...
 1-83 4.21e-27

Protein of unknown function (DUF3116); This family of proteins with unknown function appears to be restricted to Bacillales.


Pssm-ID: 402765  Cd Length: 84  Bit Score: 93.91  E-value: 4.21e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820802   1 MEFEDEKLLREVLLFAGSVDTKINDMSLEVIDFGNLRDYTKNEVLLTLYWLEENGFLTRNNN-IAEKRYTLTLKGELLYD 79
Cdd:pfam11313  1 MEEPTNALILQVLSAVKDPNFTMDNLTFESFDFDSLADYTKNELLYTLYWLEWNGYILRMENsNNKKRYRLTEKGKLLYR 80


                 ....
gi 489820802  80 RFSQ 83
Cdd:pfam11313 81 KLKN 84
 
Name Accession Description Interval E-value
DUF3116 pfam11313
Protein of unknown function (DUF3116); This family of proteins with unknown function appears ...
 1-83 4.21e-27

Protein of unknown function (DUF3116); This family of proteins with unknown function appears to be restricted to Bacillales.


Pssm-ID: 402765  Cd Length: 84  Bit Score: 93.91  E-value: 4.21e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489820802   1 MEFEDEKLLREVLLFAGSVDTKINDMSLEVIDFGNLRDYTKNEVLLTLYWLEENGFLTRNNN-IAEKRYTLTLKGELLYD 79
Cdd:pfam11313  1 MEEPTNALILQVLSAVKDPNFTMDNLTFESFDFDSLADYTKNELLYTLYWLEWNGYILRMENsNNKKRYRLTEKGKLLYR 80


                 ....
gi 489820802  80 RFSQ 83
Cdd:pfam11313 81 KLKN 84
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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