NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|489821548|ref|WP_003725347|]
View 

MULTISPECIES: bacteriocin-like WGxF protein [Listeria]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ocin_sys_WGxF super family cl41566
bacteriocin-like WGxF protein; Members of this protein family of hydrophobic proteins about 60 ...
 1-58 1.39e-07

bacteriocin-like WGxF protein; Members of this protein family of hydrophobic proteins about 60 amino acids long are found various members of the Firmicutes in three-gene contexts that suggest a role as a bacteriocin or an immunity protein. The protein is named for its most striking sequence feature, a nearly invariant WGxF motif. The two conserved neighboring families are TIGR01654-like (e.g. WP_149116529.1) and TIGR03608-like (e.g. WP_149116530.1).


The actual alignment was detected with superfamily member NF037932:

Pssm-ID: 411540  Cd Length: 59  Bit Score: 43.00  E-value: 1.39e-07
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 489821548  1 MKIIGISLVNSLLILLVVLIHKIFFRVLLLGYENLVIYWGSFVLIYFILNLITNKILL 58
Cdd:NF037932  1 MKIIGLTLLNCILILITVLIHKIIFRVFLLPYDSLLFYWGLFVAIFFILNLLTNLIFL 58
 
Name Accession Description Interval E-value
ocin_sys_WGxF NF037932
bacteriocin-like WGxF protein; Members of this protein family of hydrophobic proteins about 60 ...
 1-58 1.39e-07

bacteriocin-like WGxF protein; Members of this protein family of hydrophobic proteins about 60 amino acids long are found various members of the Firmicutes in three-gene contexts that suggest a role as a bacteriocin or an immunity protein. The protein is named for its most striking sequence feature, a nearly invariant WGxF motif. The two conserved neighboring families are TIGR01654-like (e.g. WP_149116529.1) and TIGR03608-like (e.g. WP_149116530.1).


Pssm-ID: 411540  Cd Length: 59  Bit Score: 43.00  E-value: 1.39e-07
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 489821548  1 MKIIGISLVNSLLILLVVLIHKIFFRVLLLGYENLVIYWGSFVLIYFILNLITNKILL 58
Cdd:NF037932  1 MKIIGLTLLNCILILITVLIHKIIFRVFLLPYDSLLFYWGLFVAIFFILNLLTNLIFL 58
 
Name Accession Description Interval E-value
ocin_sys_WGxF NF037932
bacteriocin-like WGxF protein; Members of this protein family of hydrophobic proteins about 60 ...
 1-58 1.39e-07

bacteriocin-like WGxF protein; Members of this protein family of hydrophobic proteins about 60 amino acids long are found various members of the Firmicutes in three-gene contexts that suggest a role as a bacteriocin or an immunity protein. The protein is named for its most striking sequence feature, a nearly invariant WGxF motif. The two conserved neighboring families are TIGR01654-like (e.g. WP_149116529.1) and TIGR03608-like (e.g. WP_149116530.1).


Pssm-ID: 411540  Cd Length: 59  Bit Score: 43.00  E-value: 1.39e-07
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 489821548  1 MKIIGISLVNSLLILLVVLIHKIFFRVLLLGYENLVIYWGSFVLIYFILNLITNKILL 58
Cdd:NF037932  1 MKIIGLTLLNCILILITVLIHKIIFRVFLLPYDSLLFYWGLFVAIFFILNLLTNLIFL 58
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH