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Conserved domains on  [gi|489821804|ref|WP_003725603|]
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MULTISPECIES: methionine ABC transporter permease [Listeria]

Protein Classification

methionine ABC transporter permease( domain architecture ID 10005172)

methionine ABC transporter permease is the transmembrane (TM) subunit of the ABC transporter complex, such as MetNPQ, that is involved in methionine import, and is responsible for the translocation of the substrate across the membrane

EC:  7.4.2.11
Gene Ontology:  GO:0033232|GO:0048473|GO:0042626
PubMed:  22095702|11421270|25750732|24638992
TCDB:  3.A.1.24

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MetP COG2011
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ...
 13-224 1.61e-84

ABC-type methionine transport system, permease component [Amino acid transport and metabolism];


:

Pssm-ID: 441614  Cd Length: 220  Bit Score: 249.97  E-value: 1.61e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489821804  13 FQMMWVATQETLYMTLVSLFAVFLLGIVLGLLLFLTNNKKHAGARILYWITAILVNVFRSIPFIILIVLLLPMTKSLVGT 92
Cdd:COG2011    9 WPLLLQATGETLYMVGVSTLIAVLLGLPLGVLLVLTRPGGLLPNPVLYRVLGVIVNIFRSIPFIILLVALIPLTRLIVGT 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489821804  93 VIGPKAALPALIISAAPFYGRMVEIAFREVDKGVIEAAKSMGANMFTIIGKVLIPEALPAIISGITVTAISLVGFTAMAG 172
Cdd:COG2011   89 SIGTTAAIVPLTIAAIPFFARLVENALREVDPGVIEAAQAMGASPWQIIFKVLLPEALPSLILGLTVTLISLIGYSAMAG 168

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 489821804 173 VIGAGGLGNTAYLEGFQRGQPDVTVLATIIILIIVFIFQFIGDFLTKRTDKR 224
Cdd:COG2011  169 AVGGGGLGDLAIRYGYQRFDTDVMLVTVVILIVLVQIIQFLGDRLARRLDHR 220
 
Name Accession Description Interval E-value
MetP COG2011
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ...
 13-224 1.61e-84

ABC-type methionine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 441614  Cd Length: 220  Bit Score: 249.97  E-value: 1.61e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489821804  13 FQMMWVATQETLYMTLVSLFAVFLLGIVLGLLLFLTNNKKHAGARILYWITAILVNVFRSIPFIILIVLLLPMTKSLVGT 92
Cdd:COG2011    9 WPLLLQATGETLYMVGVSTLIAVLLGLPLGVLLVLTRPGGLLPNPVLYRVLGVIVNIFRSIPFIILLVALIPLTRLIVGT 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489821804  93 VIGPKAALPALIISAAPFYGRMVEIAFREVDKGVIEAAKSMGANMFTIIGKVLIPEALPAIISGITVTAISLVGFTAMAG 172
Cdd:COG2011   89 SIGTTAAIVPLTIAAIPFFARLVENALREVDPGVIEAAQAMGASPWQIIFKVLLPEALPSLILGLTVTLISLIGYSAMAG 168

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 489821804 173 VIGAGGLGNTAYLEGFQRGQPDVTVLATIIILIIVFIFQFIGDFLTKRTDKR 224
Cdd:COG2011  169 AVGGGGLGDLAIRYGYQRFDTDVMLVTVVILIVLVQIIQFLGDRLARRLDHR 220
PRK10782 PRK10782
D-methionine ABC transporter permease MetI;
15-188 9.09e-43

D-methionine ABC transporter permease MetI;


Pssm-ID: 182726  Cd Length: 217  Bit Score: 143.72  E-value: 9.09e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489821804  15 MMWVATQ---ETLYMTLVSLFAVFLLGIVLGLLLFLTNNKKHAGARILYWITAILVNVFRSIPFIILIVLLLPMTKSLVG 91
Cdd:PRK10782   5 MMWLLVRgvwETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTLSALVNIFRSIPFIILLVWMIPFTRVIVG 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489821804  92 TVIGPKAALPALIISAAPFYGRMVEIAFREVDKGVIEAAKSMGANMFTIIGKVLIPEALPAIISGITVTAISLVGFTAMA 171
Cdd:PRK10782  85 TSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMG 164

                        170
                 ....*....|....*..
gi 489821804 172 GVIGAGGLGNTAYLEGF 188
Cdd:PRK10782 165 GAVGAGGLGQIGYQYGY 181
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 57-200 1.08e-11

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 61.53  E-value: 1.08e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489821804  57 RILYWITAILVNVFRSIPFIILIVLLLPMTKSLVGTVIGPKAALPALIISA---APFYGRMVEIAFREVDKGVIEAAKSM 133
Cdd:cd06261   31 GKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPALILALlliAPFARLIRRAALESIPKDLVEAARAL 110

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489821804 134 GANMFTIIGKVLIPEALPAIISGITVTAISLVGFTAMAGVIGAGGLG--NTAYLEGFQRGQPDVTVLAT 200
Cdd:cd06261  111 GASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPgpGTGLLLIFAILFPGDLGVAA 179
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 57-224 4.10e-11

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 59.62  E-value: 4.10e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489821804   57 RILYWITAILVNVFRSIP-FIILIVLLLPMTKSLVGTVIGPKAALpaLIISAAPFYGRMVEIAFREVDKGVIEAAKSMGA 135
Cdd:pfam00528  14 RRLDRLLRPLIDLLQALPsFVLAILLVVIAILSILGHGILPAIIL--ALLGWAGYARLIRRAALRSLPSDLVEAARALGA 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489821804  136 NMFTIIGKVLIPEALPAIISGITVTAISLVGFTAMAGVIGAGGLGNTAYLEGFQRGQPDVTVLATIIILIIVFIFQFIGD 215
Cdd:pfam00528  92 SRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVD 171


                  ....*....
gi 489821804  216 FLTKRTDKR 224
Cdd:pfam00528 172 ILQRLLDPR 180
PhnE TIGR01097
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound ...
 57-180 3.37e-09

phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions]


Pssm-ID: 273441 [Multi-domain]  Cd Length: 250  Bit Score: 55.24  E-value: 3.37e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489821804   57 RILYWITAILVNVFRSIPFIILIVLLLPMTKslvgtvIGPKAALPALIISAAPFYGRMVEIAFREVDKGVIEAAKSMGAN 136
Cdd:TIGR01097  93 PWLYGLARLLLNFLRAIPELVWALIFVAAVG------LGPFAGVLALAFHTVGFLGKLFAEAIEEVDPGPVEALRATGAS 166

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 489821804  137 MFTIIGKVLIPEALPAIISGITVTAISLVGFTAMAGVIGAGGLG 180
Cdd:TIGR01097 167 KLQVIRYGVLPQVLPQFLSYTLYRFEINVRAAAVLGLVGAGGIG 210
 
Name Accession Description Interval E-value
MetP COG2011
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ...
 13-224 1.61e-84

ABC-type methionine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 441614  Cd Length: 220  Bit Score: 249.97  E-value: 1.61e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489821804  13 FQMMWVATQETLYMTLVSLFAVFLLGIVLGLLLFLTNNKKHAGARILYWITAILVNVFRSIPFIILIVLLLPMTKSLVGT 92
Cdd:COG2011    9 WPLLLQATGETLYMVGVSTLIAVLLGLPLGVLLVLTRPGGLLPNPVLYRVLGVIVNIFRSIPFIILLVALIPLTRLIVGT 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489821804  93 VIGPKAALPALIISAAPFYGRMVEIAFREVDKGVIEAAKSMGANMFTIIGKVLIPEALPAIISGITVTAISLVGFTAMAG 172
Cdd:COG2011   89 SIGTTAAIVPLTIAAIPFFARLVENALREVDPGVIEAAQAMGASPWQIIFKVLLPEALPSLILGLTVTLISLIGYSAMAG 168

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 489821804 173 VIGAGGLGNTAYLEGFQRGQPDVTVLATIIILIIVFIFQFIGDFLTKRTDKR 224
Cdd:COG2011  169 AVGGGGLGDLAIRYGYQRFDTDVMLVTVVILIVLVQIIQFLGDRLARRLDHR 220
PRK10782 PRK10782
D-methionine ABC transporter permease MetI;
15-188 9.09e-43

D-methionine ABC transporter permease MetI;


Pssm-ID: 182726  Cd Length: 217  Bit Score: 143.72  E-value: 9.09e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489821804  15 MMWVATQ---ETLYMTLVSLFAVFLLGIVLGLLLFLTNNKKHAGARILYWITAILVNVFRSIPFIILIVLLLPMTKSLVG 91
Cdd:PRK10782   5 MMWLLVRgvwETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTLSALVNIFRSIPFIILLVWMIPFTRVIVG 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489821804  92 TVIGPKAALPALIISAAPFYGRMVEIAFREVDKGVIEAAKSMGANMFTIIGKVLIPEALPAIISGITVTAISLVGFTAMA 171
Cdd:PRK10782  85 TSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMG 164

                        170
                 ....*....|....*..
gi 489821804 172 GVIGAGGLGNTAYLEGF 188
Cdd:PRK10782 165 GAVGAGGLGQIGYQYGY 181
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 66-200 3.57e-16

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 73.94  E-value: 3.57e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489821804  66 LVNVFRSIPFIILIVLLLPmtksLVGtvIGPKAALPALIISAAPFYGRMVEIAFREVDKGVIEAAKSMGANMFTIIGKVL 145
Cdd:COG1174   58 VANILQTIPSLALLALLIP----LLG--IGPAPAIIALVLYALLPILRNTYTGLRSVDPAVVEAARGMGMTPWQRLWRVE 131

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 489821804 146 IPEALPAIISGITVTAISLVGFTAMAGVIGAGGLGnTAYLEGFQRGQPDVTVLAT 200
Cdd:COG1174  132 LPLALPVILAGIRTAAVQNIGTATLAALIGAGGLG-DLIFDGLQLNNTALILAGA 185
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 57-200 1.08e-11

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 61.53  E-value: 1.08e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489821804  57 RILYWITAILVNVFRSIPFIILIVLLLPMTKSLVGTVIGPKAALPALIISA---APFYGRMVEIAFREVDKGVIEAAKSM 133
Cdd:cd06261   31 GKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPALILALlliAPFARLIRRAALESIPKDLVEAARAL 110

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489821804 134 GANMFTIIGKVLIPEALPAIISGITVTAISLVGFTAMAGVIGAGGLG--NTAYLEGFQRGQPDVTVLAT 200
Cdd:cd06261  111 GASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPgpGTGLLLIFAILFPGDLGVAA 179
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 57-224 4.10e-11

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 59.62  E-value: 4.10e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489821804   57 RILYWITAILVNVFRSIP-FIILIVLLLPMTKSLVGTVIGPKAALpaLIISAAPFYGRMVEIAFREVDKGVIEAAKSMGA 135
Cdd:pfam00528  14 RRLDRLLRPLIDLLQALPsFVLAILLVVIAILSILGHGILPAIIL--ALLGWAGYARLIRRAALRSLPSDLVEAARALGA 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489821804  136 NMFTIIGKVLIPEALPAIISGITVTAISLVGFTAMAGVIGAGGLGNTAYLEGFQRGQPDVTVLATIIILIIVFIFQFIGD 215
Cdd:pfam00528  92 SRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVD 171


                  ....*....
gi 489821804  216 FLTKRTDKR 224
Cdd:pfam00528 172 ILQRLLDPR 180
PhnE COG3639
ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport ...
 54-180 7.16e-11

ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 442856 [Multi-domain]  Cd Length: 244  Bit Score: 59.71  E-value: 7.16e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489821804  54 AGARILYWITAILVNVFRSIPFIILIVLLLPMtkslVGtvIGPKAALPALIISAAPFYGRMVEIAFREVDKGVIEAAKSM 133
Cdd:COG3639   83 APNPWVRLLARRLLNVLRAIPELVWALIFVAA----VG--LGPFAGVLALAIHTIGFLGKLFAEAIEEIDPGPVEALRAT 156

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 489821804 134 GANMFTIIGKVLIPEALPAIISgitvtaISLVGF------TAMAGVIGAGGLG 180
Cdd:COG3639  157 GASRLQVIRYGVLPQVLPQFLS------YTLYRFeiniraATVLGLVGAGGIG 203
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 57-175 1.94e-10

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 58.16  E-value: 1.94e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489821804  57 RILYWITAILVNVFRSIPFIILIVLL---LPmtksLVGTVIGP-KAALPALIISAAPFygrMVEI---AFREVDKGVIEA 129
Cdd:COG0765   49 PVLRWLATAYVEFFRGTPLLVQLFFIyfgLP----LLGIDLSPfVAAVIALTLNSAAY---LAEIvraGIQSVPKGQWEA 121

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 489821804 130 AKSMGANMFTIIGKVLIPEALPAIISGITVTAISLVGFTAMAGVIG 175
Cdd:COG0765  122 ARALGLSRWQTMRRIILPQALRIILPPLGNEFISLLKDTSLVSVIG 167
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 102-160 2.46e-09

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 55.91  E-value: 2.46e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 489821804 102 ALIISAAPFYGRMVEIAFREVDKGVIEAAKSMGANMFTIIGKVLIPEALPAIISGITVT 160
Cdd:COG0555  142 AQTFVSLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALA 200
PhnE TIGR01097
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound ...
 57-180 3.37e-09

phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions]


Pssm-ID: 273441 [Multi-domain]  Cd Length: 250  Bit Score: 55.24  E-value: 3.37e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489821804   57 RILYWITAILVNVFRSIPFIILIVLLLPMTKslvgtvIGPKAALPALIISAAPFYGRMVEIAFREVDKGVIEAAKSMGAN 136
Cdd:TIGR01097  93 PWLYGLARLLLNFLRAIPELVWALIFVAAVG------LGPFAGVLALAFHTVGFLGKLFAEAIEEVDPGPVEALRATGAS 166

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 489821804  137 MFTIIGKVLIPEALPAIISGITVTAISLVGFTAMAGVIGAGGLG 180
Cdd:TIGR01097 167 KLQVIRYGVLPQVLPQFLSYTLYRFEINVRAAAVLGLVGAGGIG 210
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 57-180 2.59e-08

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 52.84  E-value: 2.59e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489821804  57 RILYWITAILVNVFRSIPFIILIVLLLpmtkSLVGTVIGPKAALpALIISAAPFYgRMVEIAFREVDKGVIEAAKSMGAN 136
Cdd:COG0600   92 RLLRRLLDPLLVFLRPIPPLALAPLLI----LWFGIGEASKIFV-IFLGAFFPIL-LNTAAGVRSVDPELLELARSLGAS 165

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 489821804 137 MFTIIGKVLIPEALPAIISGITVT-AISLVGftAMAG--VIGAGGLG 180
Cdd:COG0600  166 RWQILRKVVLPAALPYIFTGLRIAlGLAWIG--LVVAelLGASSGLG 210
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 66-177 8.60e-07

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 48.19  E-value: 8.60e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489821804  66 LVNVFRSIPFIIL-IVLLLPMTKSLVGTVIgpkaalpALIISAAPFYGRMVE-IAFREVDKGVIEAAKSMGANMFTIIGK 143
Cdd:COG1173  117 LVDVLLAFPSLLLaIALVAVLGPGLLNVIL-------ALGLTGWPGYARLVRaQVLSLREREYVEAARALGASPLRIIFR 189

                         90       100       110
                 ....*....|....*....|....*....|....
gi 489821804 144 VLIPEALPAIISGITVTAISLVGFTAMAGVIGAG 177
Cdd:COG1173  190 HILPNVLPPLIVQATLGIASAILAEAGLSFLGLG 223
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 102-174 5.82e-06

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 46.15  E-value: 5.82e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489821804 102 ALIISAAPFYGRMVEIAFREVDKGVIEAAKSMGANMFTIIGKVLIPEALPAIISG------ITVTAISLVGFTAMAGVI 174
Cdd:PRK15050 167 AEITFYTPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGgslcllLTLNEFGIVLFTGAKDVV 245
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 118-192 1.97e-05

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 44.37  E-value: 1.97e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489821804 118 AFREVDKGVIEAAKSMGANMFTIIGKVLIPEALPAIISGITVTAISLVGFTAMAGVIGAGG---LGNTAYLEGFQRGQ 192
Cdd:COG1176  176 ALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGGKvlmIGNLIYQQFLSALN 253
PRK10952 PRK10952
proline/glycine betaine ABC transporter permease ProW;
104-180 2.29e-05

proline/glycine betaine ABC transporter permease ProW;


Pssm-ID: 236805  Cd Length: 355  Bit Score: 44.31  E-value: 2.29e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489821804 104 IISAAPFYGRMVEIAFREVDKGVIEAAKSMGANMFTIIGKVLIPEALPAIISGITVTAISLVGFTAMAGVIGAGGLG 180
Cdd:PRK10952 216 IIFALPPIVRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVIASMIAVGGLG 292
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 109-156 1.64e-04

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 41.51  E-value: 1.64e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 489821804 109 PFYGRMVEIAFREVDKGVIEAAKSMGANMFTIIGKVLIPEALPAIISG 156
Cdd:PRK09500 140 PFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVAAG 187
PRK15100 PRK15100
cystine ABC transporter permease;
59-174 2.82e-04

cystine ABC transporter permease;


Pssm-ID: 185055 [Multi-domain]  Cd Length: 220  Bit Score: 40.50  E-value: 2.82e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489821804  59 LYWITAILVNVFRSIPFII---LIVLLLPMtkslVGTVIGP-KAALPALIISAAPFYGRMVEIAFREVDKGVIEAAKSMG 134
Cdd:PRK15100  51 VRWLARFYVSIFRGTPLIAqlfMIYYGLPQ----FGIELDPiPAAMIGLSLNTAAYAAETLRAAISSIDKGQWEAAASIG 126

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 489821804 135 ANMFTIIGKVLIPEALPAIISGITVTAISLVGFTAMAGVI 174
Cdd:PRK15100 127 MTRWQTLRRAILPQAARTALPPLSNSFISLVKDTSLAATI 166
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 76-156 3.13e-04

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 40.87  E-value: 3.13e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489821804  76 IILIVLLLPMTKSLVGTVIgpkaalpALIISAAPFYGRMVEIAFREVDKGVIEAAKSMGANMFTIIGKVLIPEALPAIIS 155
Cdd:COG1177  118 LLLLFSALGLSGGLWGLIL-------AHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILA 190


                 .
gi 489821804 156 G 156
Cdd:COG1177  191 G 191
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
95-162 5.16e-04

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 40.53  E-value: 5.16e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489821804  95 GPKAALPALIISAAPFYGRMVEIAFREVDKGVIEAAKSMGANMFTIIGKVLIPEALPAIISGITVTAI 162
Cdd:COG1178  138 GLGGIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFL 205
PRK15107 PRK15107
glutamate/aspartate ABC transporter permease GltK;
57-183 2.27e-03

glutamate/aspartate ABC transporter permease GltK;


Pssm-ID: 185062 [Multi-domain]  Cd Length: 224  Bit Score: 37.89  E-value: 2.27e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489821804  57 RILYWITAILVNVFRSIPFIILIVLLLPMTKSLVGTVIG--PK------AALPALIISAAPFYGRMVEIAFREVDKGVIE 128
Cdd:PRK15107  50 KPVAWFAKAYVNVFRSIPLVMVLLWFYLIVPGFLQNVLGlsPKtdirliSAMVAFSMFEAAYYSEIIRAGIQSISRGQSS 129

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 489821804 129 AAKSMGANMFTIIGKVLIPEALPAIISGITVTAISLVGFTAMAGVIGAGGLGNTA 183
Cdd:PRK15107 130 AALALGMTHWQSMKLIILPQAFRAMVPLLLTQGIVLFQDTSLVYVLSLADFFRTA 184
ssuC PRK11365
aliphatic sulfonate ABC transporter permease SsuC;
120-170 2.95e-03

aliphatic sulfonate ABC transporter permease SsuC;


Pssm-ID: 183100  Cd Length: 263  Bit Score: 37.99  E-value: 2.95e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489821804 120 REVDKGVIEAAKSMGANMFTIIGKVLIPEALPAIISGI---------------TVTAISLVGFTAM 170
Cdd:PRK11365 148 RNIDRGLVEMARSYGLSGIPLFIHVILPGALPSIMVGVrfalglmwltlivaeTISANSGIGYLAM 213
cysT CHL00187
sulfate transport protein; Provisional
 102-160 5.09e-03

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 36.92  E-value: 5.09e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 489821804 102 ALIISAAPFYGRMVEIAFREVDKGVIEAAKSMGANMFTIIGKVLIPEALPAIISGITVT 160
Cdd:CHL00187 143 AMIFVSFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALT 201
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
102-176 5.23e-03

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 37.04  E-value: 5.23e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489821804 102 ALIISAAPFYGRMVEIAFREVDKGVIEAAKSMGANMFTIIGKVLIPEALPAIISGitvTAISlvgFTAMAGVIGA 176
Cdd:PRK10971 146 AMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAG---VALS---FTRSLGEFGA 214
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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