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Conserved domains on  [gi|489822503|ref|WP_003726299|]
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MULTISPECIES: FAD-dependent oxidoreductase [Listeria]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ndh COG1252
NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];
4-390 5.64e-138

NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];


:

Pssm-ID: 440864 [Multi-domain]  Cd Length: 386  Bit Score: 407.60  E-value: 5.64e-138
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822503   4 KNIVLIGAGYAGVHAAKKLAKKYKKdkDVNITLIDRHSYHTMMTELHEVAGGRVEPTAIQYDLRRLFNRTKVNLVTDNVT 83
Cdd:COG1252    2 KRIVIVGGGFAGLEAARRLRKKLGG--DAEVTLIDPNPYHLFQPLLPEVAAGTLSPDDIAIPLRELLRRAGVRFIQGEVT 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822503  84 HVDHDKKVVTTEHG-SYPFDYLVLGMGGEPNDFGTPGVGENGFTLWSWEDSVKLRNHIEETVTKASREQdvekrkaMLTF 162
Cdd:COG1252   80 GIDPEARTVTLADGrTLSYDYLVIATGSVTNFFGIPGLAEHALPLKTLEDALALRERLLAAFERAERRR-------LLTI 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822503 163 VVCGSGFTGIEMVGELLEWKDRLAKDNKIDASEIKLVVVEAAPTILNMLERRDADKAERYMVKKGIEIMKNAAIVEVKPE 242
Cdd:COG1252  153 VVVGGGPTGVELAGELAELLRKLLRYPGIDPDKVRITLVEAGPRILPGLGEKLSEAAEKELEKRGVEVHTGTRVTEVDAD 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822503 243 SIVLKSGEELPTSTLIWTAGVRANSDTKDYGMESARAGRLKVNQYMEAEGLKDVYVVGDLAYFEDEEGKPTPQIVEGAEQ 322
Cdd:COG1252  233 GVTLEDGEEIPADTVIWAAGVKAPPLLADLGLPTDRRGRVLVDPTLQVPGHPNVFAIGDCAAVPDPDGKPVPKTAQAAVQ 312

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489822503 323 TALTAAKSIIVEMSGtGEKEPFQGKYHGVMVSIGAKYGVAHLGGMHLSGWFAILMKHMVNLYYFFGIR 390
Cdd:COG1252  313 QAKVLAKNIAALLRG-KPLKPFRYRDKGCLASLGRGAAVADVGGLKLSGFLAWLLKRAIHLYFLPGFR 379
DoxX COG2259
Uncharacterized membrane protein YphA, DoxX/SURF4 family [Function unknown];
512-604 2.54e-06

Uncharacterized membrane protein YphA, DoxX/SURF4 family [Function unknown];


:

Pssm-ID: 441860  Cd Length: 134  Bit Score: 47.13  E-value: 2.54e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822503 512 LSHMPGWFQWIMELLMPNLDVALVMqkvVPFVELAIGLAMVVGLFTWLVSIGSAGFLVMFTLSA--------MLGWDK-- 581
Cdd:COG2259   30 LFGFDGTAGFFASLGLPLPALLAYL---AGLAELVGGLLLILGLFTRLAALLLAGFMLVAIFVVhlpngfwaMGGGEKnl 106

                         90       100
                 ....*....|....*....|...
gi 489822503 582 FWALPASIALLNGAGRtFGLDYW 604
Cdd:COG2259  107 LLAGGLLALALLGPGR-YSLDAL 128
 
Name Accession Description Interval E-value
Ndh COG1252
NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];
4-390 5.64e-138

NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];


Pssm-ID: 440864 [Multi-domain]  Cd Length: 386  Bit Score: 407.60  E-value: 5.64e-138
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822503   4 KNIVLIGAGYAGVHAAKKLAKKYKKdkDVNITLIDRHSYHTMMTELHEVAGGRVEPTAIQYDLRRLFNRTKVNLVTDNVT 83
Cdd:COG1252    2 KRIVIVGGGFAGLEAARRLRKKLGG--DAEVTLIDPNPYHLFQPLLPEVAAGTLSPDDIAIPLRELLRRAGVRFIQGEVT 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822503  84 HVDHDKKVVTTEHG-SYPFDYLVLGMGGEPNDFGTPGVGENGFTLWSWEDSVKLRNHIEETVTKASREQdvekrkaMLTF 162
Cdd:COG1252   80 GIDPEARTVTLADGrTLSYDYLVIATGSVTNFFGIPGLAEHALPLKTLEDALALRERLLAAFERAERRR-------LLTI 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822503 163 VVCGSGFTGIEMVGELLEWKDRLAKDNKIDASEIKLVVVEAAPTILNMLERRDADKAERYMVKKGIEIMKNAAIVEVKPE 242
Cdd:COG1252  153 VVVGGGPTGVELAGELAELLRKLLRYPGIDPDKVRITLVEAGPRILPGLGEKLSEAAEKELEKRGVEVHTGTRVTEVDAD 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822503 243 SIVLKSGEELPTSTLIWTAGVRANSDTKDYGMESARAGRLKVNQYMEAEGLKDVYVVGDLAYFEDEEGKPTPQIVEGAEQ 322
Cdd:COG1252  233 GVTLEDGEEIPADTVIWAAGVKAPPLLADLGLPTDRRGRVLVDPTLQVPGHPNVFAIGDCAAVPDPDGKPVPKTAQAAVQ 312

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489822503 323 TALTAAKSIIVEMSGtGEKEPFQGKYHGVMVSIGAKYGVAHLGGMHLSGWFAILMKHMVNLYYFFGIR 390
Cdd:COG1252  313 QAKVLAKNIAALLRG-KPLKPFRYRDKGCLASLGRGAAVADVGGLKLSGFLAWLLKRAIHLYFLPGFR 379
PTZ00318 PTZ00318
NADH dehydrogenase-like protein; Provisional
 5-376 4.69e-50

NADH dehydrogenase-like protein; Provisional


Pssm-ID: 185553 [Multi-domain]  Cd Length: 424  Bit Score: 179.58  E-value: 4.69e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822503   5 NIVLIGAGYAGVHAAKKLAKKYKkdkdvNITLIDRHSYHTMMTELHEVAGGRVEPTAIQYDLRRLFNRTKVNLVTDNVTH 84
Cdd:PTZ00318  12 NVVVLGTGWAGAYFVRNLDPKKY-----NITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLRAVVYD 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822503  85 VDHDKKVVTTEHGS-----------YPFDYLVLGMGGEPNDFGTPGVGENGFTLWSWEDSVKLRNHIEETVTKASR-EQD 152
Cdd:PTZ00318  87 VDFEEKRVKCGVVSksnnanvntfsVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLpTTS 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822503 153 VEKRKAMLTFVVCGSGFTGIEMVGELLEW-KDRLAKDNKIDASEIKLVVVEAAPTILNMLERRDADKAERYMVKKGIEIM 231
Cdd:PTZ00318 167 VEERKRLLHFVVVGGGPTGVEFAAELADFfRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVDIR 246

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822503 232 KNAAIVEVKPESIVLKSGEELPTSTLIWTAGVRANSDTKDYGMESARAGRLKVNQYMEAEGLKDVYVVGDLAYFEDeegK 311
Cdd:PTZ00318 247 TKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGVGPGPLTKQLKVDKTSRGRISVDDHLRVKPIPNVFALGDCAANEE---R 323

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489822503 312 PTPQIVEGAEQTALTAAKSIIVEMSGTGEKEPFQGKYHGVMVSIGAKYGVAHLGGMHLSGWFAIL 376
Cdd:PTZ00318 324 PLPTLAQVASQQGVYLAKEFNNELKGKPMSKPFVYRSLGSLAYLGNYSAIVQLGAFDLSGFKALL 388
Pyr_redox_2 pfam07992
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
 4-301 2.07e-30

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 400379 [Multi-domain]  Cd Length: 301  Bit Score: 121.27  E-value: 2.07e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822503    4 KNIVLIGAGYAGVHAAKKLAKKykkdkDVNITLIDR---HSYHTMMteLHEVAGGRVEPTAIQYDLRRLFNRTK------ 74
Cdd:pfam07992   1 YDVVVIGGGPAGLAAALTLAQL-----GGKVTLIEDegtCPYGGCV--LSKALLGAAEAPEIASLWADLYKRKEevvkkl 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822503   75 ----VNLVTDNVTHVDHDKKVVTTEHG------SYPFDYLVLGMGGEPNDFGTPGVGENGFTLwswedsvkLRNHieeTV 144
Cdd:pfam07992  74 nngiEVLLGTEVVSIDPGAKKVVLEELvdgdgeTITYDRLVIATGARPRLPPIPGVELNVGFL--------VRTL---DS 142

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822503  145 TKASREQDVEKRkamltFVVCGSGFTGIEMVGELLewkdRLAKdnkidaseiKLVVVEAAPTILNMLERRDADKAERYMV 224
Cdd:pfam07992 143 AEALRLKLLPKR-----VVVVGGGYIGVELAAALA----KLGK---------EVTLIEALDRLLRAFDEEISAALEKALE 204

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822503  225 KKGIEIMKNAAIVEVKPESI----VLKSGEELPTSTLIWTAGVRANSDT-KDYGMESARAGRLKVNQYMEAEgLKDVYVV 299
Cdd:pfam07992 205 KNGVEVRLGTSVKEIIGDGDgvevILKDGTEIDADLVVVAIGRRPNTELlEAAGLELDERGGIVVDEYLRTS-VPGIYAA 283


                  ..
gi 489822503  300 GD 301
Cdd:pfam07992 284 GD 285
DoxX COG2259
Uncharacterized membrane protein YphA, DoxX/SURF4 family [Function unknown];
512-604 2.54e-06

Uncharacterized membrane protein YphA, DoxX/SURF4 family [Function unknown];


Pssm-ID: 441860  Cd Length: 134  Bit Score: 47.13  E-value: 2.54e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822503 512 LSHMPGWFQWIMELLMPNLDVALVMqkvVPFVELAIGLAMVVGLFTWLVSIGSAGFLVMFTLSA--------MLGWDK-- 581
Cdd:COG2259   30 LFGFDGTAGFFASLGLPLPALLAYL---AGLAELVGGLLLILGLFTRLAALLLAGFMLVAIFVVhlpngfwaMGGGEKnl 106

                         90       100
                 ....*....|....*....|...
gi 489822503 582 FWALPASIALLNGAGRtFGLDYW 604
Cdd:COG2259  107 LLAGGLLALALLGPGR-YSLDAL 128
 
Name Accession Description Interval E-value
Ndh COG1252
NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];
4-390 5.64e-138

NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];


Pssm-ID: 440864 [Multi-domain]  Cd Length: 386  Bit Score: 407.60  E-value: 5.64e-138
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822503   4 KNIVLIGAGYAGVHAAKKLAKKYKKdkDVNITLIDRHSYHTMMTELHEVAGGRVEPTAIQYDLRRLFNRTKVNLVTDNVT 83
Cdd:COG1252    2 KRIVIVGGGFAGLEAARRLRKKLGG--DAEVTLIDPNPYHLFQPLLPEVAAGTLSPDDIAIPLRELLRRAGVRFIQGEVT 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822503  84 HVDHDKKVVTTEHG-SYPFDYLVLGMGGEPNDFGTPGVGENGFTLWSWEDSVKLRNHIEETVTKASREQdvekrkaMLTF 162
Cdd:COG1252   80 GIDPEARTVTLADGrTLSYDYLVIATGSVTNFFGIPGLAEHALPLKTLEDALALRERLLAAFERAERRR-------LLTI 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822503 163 VVCGSGFTGIEMVGELLEWKDRLAKDNKIDASEIKLVVVEAAPTILNMLERRDADKAERYMVKKGIEIMKNAAIVEVKPE 242
Cdd:COG1252  153 VVVGGGPTGVELAGELAELLRKLLRYPGIDPDKVRITLVEAGPRILPGLGEKLSEAAEKELEKRGVEVHTGTRVTEVDAD 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822503 243 SIVLKSGEELPTSTLIWTAGVRANSDTKDYGMESARAGRLKVNQYMEAEGLKDVYVVGDLAYFEDEEGKPTPQIVEGAEQ 322
Cdd:COG1252  233 GVTLEDGEEIPADTVIWAAGVKAPPLLADLGLPTDRRGRVLVDPTLQVPGHPNVFAIGDCAAVPDPDGKPVPKTAQAAVQ 312

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489822503 323 TALTAAKSIIVEMSGtGEKEPFQGKYHGVMVSIGAKYGVAHLGGMHLSGWFAILMKHMVNLYYFFGIR 390
Cdd:COG1252  313 QAKVLAKNIAALLRG-KPLKPFRYRDKGCLASLGRGAAVADVGGLKLSGFLAWLLKRAIHLYFLPGFR 379
PTZ00318 PTZ00318
NADH dehydrogenase-like protein; Provisional
 5-376 4.69e-50

NADH dehydrogenase-like protein; Provisional


Pssm-ID: 185553 [Multi-domain]  Cd Length: 424  Bit Score: 179.58  E-value: 4.69e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822503   5 NIVLIGAGYAGVHAAKKLAKKYKkdkdvNITLIDRHSYHTMMTELHEVAGGRVEPTAIQYDLRRLFNRTKVNLVTDNVTH 84
Cdd:PTZ00318  12 NVVVLGTGWAGAYFVRNLDPKKY-----NITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLRAVVYD 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822503  85 VDHDKKVVTTEHGS-----------YPFDYLVLGMGGEPNDFGTPGVGENGFTLWSWEDSVKLRNHIEETVTKASR-EQD 152
Cdd:PTZ00318  87 VDFEEKRVKCGVVSksnnanvntfsVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLpTTS 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822503 153 VEKRKAMLTFVVCGSGFTGIEMVGELLEW-KDRLAKDNKIDASEIKLVVVEAAPTILNMLERRDADKAERYMVKKGIEIM 231
Cdd:PTZ00318 167 VEERKRLLHFVVVGGGPTGVEFAAELADFfRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVDIR 246

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822503 232 KNAAIVEVKPESIVLKSGEELPTSTLIWTAGVRANSDTKDYGMESARAGRLKVNQYMEAEGLKDVYVVGDLAYFEDeegK 311
Cdd:PTZ00318 247 TKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGVGPGPLTKQLKVDKTSRGRISVDDHLRVKPIPNVFALGDCAANEE---R 323

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489822503 312 PTPQIVEGAEQTALTAAKSIIVEMSGTGEKEPFQGKYHGVMVSIGAKYGVAHLGGMHLSGWFAIL 376
Cdd:PTZ00318 324 PLPTLAQVASQQGVYLAKEFNNELKGKPMSKPFVYRSLGSLAYLGNYSAIVQLGAFDLSGFKALL 388
FadH2 COG0446
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase ...
 31-346 1.39e-33

NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase [Lipid transport and metabolism];


Pssm-ID: 440215 [Multi-domain]  Cd Length: 322  Bit Score: 130.70  E-value: 1.39e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822503  31 DVNITLIDR---HSYHTMMTELHeVAGGRVEPTAIQYDLRRLFNRTKVNLVT-DNVTHVDHDKKVVTTEHG-SYPFDYLV 105
Cdd:COG0446    5 DAEITVIEKgphHSYQPCGLPYY-VGGGIKDPEDLLVRTPESFERKGIDVRTgTEVTAIDPEAKTVTLRDGeTLSYDKLV 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822503 106 LGMGGEPNDFGTPGVGENG-FTLWSWEDSVKLRNHIeetvtkasreqdveKRKAMLTFVVCGSGFTGIEMVGELLEWKdr 184
Cdd:COG0446   84 LATGARPRPPPIPGLDLPGvFTLRTLDDADALREAL--------------KEFKGKRAVVIGGGPIGLELAEALRKRG-- 147

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822503 185 lakdnkidaseIKLVVVEAAPTILNMLERRDADKAERYMVKKGIEIMKNAAIVEVKPE---SIVLKSGEELPTSTLIWTA 261
Cdd:COG0446  148 -----------LKVTLVERAPRLLGVLDPEMAALLEEELREHGVELRLGETVVAIDGDdkvAVTLTDGEEIPADLVVVAP 216

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822503 262 GVRANSD-TKDYGMESARAGRLKVNQYMEAeGLKDVYVVGDLAYFEDEEGKPTPQIVEG--AEQTALTAAKSIivemsgT 338
Cdd:COG0446  217 GVRPNTElAKDAGLALGERGWIKVDETLQT-SDPDVYAAGDCAEVPHPVTGKTVYIPLAsaANKQGRVAAENI------L 289


                 ....*...
gi 489822503 339 GEKEPFQG 346
Cdd:COG0446  290 GGPAPFPG 297
Pyr_redox_2 pfam07992
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
 4-301 2.07e-30

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 400379 [Multi-domain]  Cd Length: 301  Bit Score: 121.27  E-value: 2.07e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822503    4 KNIVLIGAGYAGVHAAKKLAKKykkdkDVNITLIDR---HSYHTMMteLHEVAGGRVEPTAIQYDLRRLFNRTK------ 74
Cdd:pfam07992   1 YDVVVIGGGPAGLAAALTLAQL-----GGKVTLIEDegtCPYGGCV--LSKALLGAAEAPEIASLWADLYKRKEevvkkl 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822503   75 ----VNLVTDNVTHVDHDKKVVTTEHG------SYPFDYLVLGMGGEPNDFGTPGVGENGFTLwswedsvkLRNHieeTV 144
Cdd:pfam07992  74 nngiEVLLGTEVVSIDPGAKKVVLEELvdgdgeTITYDRLVIATGARPRLPPIPGVELNVGFL--------VRTL---DS 142

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822503  145 TKASREQDVEKRkamltFVVCGSGFTGIEMVGELLewkdRLAKdnkidaseiKLVVVEAAPTILNMLERRDADKAERYMV 224
Cdd:pfam07992 143 AEALRLKLLPKR-----VVVVGGGYIGVELAAALA----KLGK---------EVTLIEALDRLLRAFDEEISAALEKALE 204

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822503  225 KKGIEIMKNAAIVEVKPESI----VLKSGEELPTSTLIWTAGVRANSDT-KDYGMESARAGRLKVNQYMEAEgLKDVYVV 299
Cdd:pfam07992 205 KNGVEVRLGTSVKEIIGDGDgvevILKDGTEIDADLVVVAIGRRPNTELlEAAGLELDERGGIVVDEYLRTS-VPGIYAA 283


                  ..
gi 489822503  300 GD 301
Cdd:pfam07992 284 GD 285
Lpd COG1249
Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex ...
 163-303 6.78e-09

Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase [Energy production and conversion]; Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase is part of the Pathway/BioSystem: Glycine cleavagePyruvate oxidation


Pssm-ID: 440861 [Multi-domain]  Cd Length: 456  Bit Score: 58.56  E-value: 6.78e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822503 163 VVCGSGFTGIEMvgellewkdrlakdnkidASeI------KLVVVEAAPTILNMLERRDADKAERYMVKKGIEIMKNAAI 236
Cdd:COG1249  172 VVIGGGYIGLEF------------------AQ-IfarlgsEVTLVERGDRLLPGEDPEISEALEKALEKEGIDILTGAKV 232

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489822503 237 VEVKPES----IVLKSGEELPTST---LIWTAGVRANsdTKDYGMESA-----RAGRLKVNQYMEAeGLKDVYVVGDLA 303
Cdd:COG1249  233 TSVEKTGdgvtVTLEDGGGEEAVEadkVLVATGRRPN--TDGLGLEAAgveldERGGIKVDEYLRT-SVPGIYAIGDVT 308
TrxB COG0492
Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];
6-331 4.23e-08

Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440258 [Multi-domain]  Cd Length: 305  Bit Score: 55.13  E-value: 4.23e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822503   6 IVLIGAG--------YAGvhaakklakkykkDKDVNITLIDRHSYH---TMMTELHEVAGGRVEPTAIQY--DLRRLFNR 72
Cdd:COG0492    3 VVIIGAGpagltaaiYAA-------------RAGLKTLVIEGGEPGgqlATTKEIENYPGFPEGISGPELaeRLREQAER 69

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822503  73 TKVNLVTDNVTHVDHDK--KVVTTEHG-SYPFDYLVLGMGGEPNDFGTPGVGE------------NGFTLwswedsvklr 137
Cdd:COG0492   70 FGAEILLEEVTSVDKDDgpFRVTTDDGtEYEAKAVIIATGAGPRKLGLPGEEEfegrgvsycatcDGFFF---------- 139

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822503 138 nhieetvtkasREQDVekrkamltfVVCGSGFTGIEMVGELLEWkdrlakdnkidASEIKLVVveaaptilnmleRRDAD 217
Cdd:COG0492  140 -----------RGKDV---------VVVGGGDSALEEALYLTKF-----------ASKVTLIH------------RRDEL 176

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822503 218 KAERYMVKK-----GIEIMKNAAIVEV----KPESIVLKSG-----EELPTSTLIWTAGVRANSD-TKDYGMESARAGRL 282
Cdd:COG0492  177 RASKILVERlranpKIEVLWNTEVTEIegdgRVEGVTLKNVktgeeKELEVDGVFVAIGLKPNTElLKGLGLELDEDGYI 256

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 489822503 283 KVNQYMEA--EGlkdVYVVGDLAyfedeeGKPTPQIV----EGAeqtalTAAKSI 331
Cdd:COG0492  257 VVDEDMETsvPG---VFAAGDVR------DYKYRQAAtaagEGA-----IAALSA 297
PRK07251 PRK07251
FAD-containing oxidoreductase;
197-302 7.97e-07

FAD-containing oxidoreductase;


Pssm-ID: 180907 [Multi-domain]  Cd Length: 438  Bit Score: 51.67  E-value: 7.97e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822503 197 KLVVVEAAPTILNMLERRDADKAERYMVKKGIEIMKNAAIVEVKPES---IVLKSGEELPTSTLIWTAGVRANsdTKDYG 273
Cdd:PRK07251 182 KVTVLDAASTILPREEPSVAALAKQYMEEDGITFLLNAHTTEVKNDGdqvLVVTEDETYRFDALLYATGRKPN--TEPLG 259

                         90       100       110
                 ....*....|....*....|....*....|....
gi 489822503 274 MESA-----RAGRLKVNQYMEAEgLKDVYVVGDL 302
Cdd:PRK07251 260 LENTdieltERGAIKVDDYCQTS-VPGVFAVGDV 292
PRK09564 PRK09564
coenzyme A disulfide reductase; Reviewed
 82-303 2.00e-06

coenzyme A disulfide reductase; Reviewed


Pssm-ID: 181958 [Multi-domain]  Cd Length: 444  Bit Score: 50.42  E-value: 2.00e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822503  82 VTHVDHDKKVVTTEH--------GSYpfDYLVLGMGGEPNdfgTPGVG----ENGFTLWSWEDSVKLRNHIeetvtkasr 149
Cdd:PRK09564  79 VVKVDAKNKTITVKNlktgsifnDTY--DKLMIATGARPI---IPPIKninlENVYTLKSMEDGLALKELL--------- 144

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822503 150 eQDVEKRKAmltfVVCGSGFTGIEMVGELLewkdRLAKDNKIDASEIKLVVVEAAPTILNMLERRdadkaeryMVKKGIE 229
Cdd:PRK09564 145 -KDEEIKNI----VIIGAGFIGLEAVEAAK----HLGKNVRIIQLEDRILPDSFDKEITDVMEEE--------LRENGVE 207

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489822503 230 IMKNAAIVEVKPES---IVLKSGEELPTSTLIWTAGVRANSD-TKDYGMESARAGRLKVNQYMEAEgLKDVYVVGDLA 303
Cdd:PRK09564 208 LHLNEFVKSLIGEDkveGVVTDKGEYEADVVIVATGVKPNTEfLEDTGLKTLKNGAIIVDEYGETS-IENIYAAGDCA 284
DoxX COG2259
Uncharacterized membrane protein YphA, DoxX/SURF4 family [Function unknown];
512-604 2.54e-06

Uncharacterized membrane protein YphA, DoxX/SURF4 family [Function unknown];


Pssm-ID: 441860  Cd Length: 134  Bit Score: 47.13  E-value: 2.54e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822503 512 LSHMPGWFQWIMELLMPNLDVALVMqkvVPFVELAIGLAMVVGLFTWLVSIGSAGFLVMFTLSA--------MLGWDK-- 581
Cdd:COG2259   30 LFGFDGTAGFFASLGLPLPALLAYL---AGLAELVGGLLLILGLFTRLAALLLAGFMLVAIFVVhlpngfwaMGGGEKnl 106

                         90       100
                 ....*....|....*....|...
gi 489822503 582 FWALPASIALLNGAGRtFGLDYW 604
Cdd:COG2259  107 LLAGGLLALALLGPGR-YSLDAL 128
Pyr_redox pfam00070
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
 163-249 3.17e-06

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 425450 [Multi-domain]  Cd Length: 80  Bit Score: 45.27  E-value: 3.17e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822503  163 VVCGSGFTGIEMVGELLewkdRLAKdnkidaseiKLVVVEAAPTILNMLERRDADKAERYMVKKGIEIMKNAAIVEVKPE 242
Cdd:pfam00070   3 VVVGGGYIGLELAGALA----RLGS---------KVTVVERRDRLLPGFDPEIAKILQEKLEKNGIEFLLNTTVEAIEGN 69

                          90
                  ....*....|.
gi 489822503  243 S----IVLKSG 249
Cdd:pfam00070  70 GdgvvVVLTDG 80
PRK06416 PRK06416
dihydrolipoamide dehydrogenase; Reviewed
 65-331 3.83e-06

dihydrolipoamide dehydrogenase; Reviewed


Pssm-ID: 235798 [Multi-domain]  Cd Length: 462  Bit Score: 49.76  E-value: 3.83e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822503  65 DLRRLFNRTKVNLVTDNVTHVDHDKKVVTTEHGS--YPFDYLVLGMGGEPndFGTPGVGENGFTLWSWEDSVKLrnhieE 142
Cdd:PRK06416  97 GVEGLLKKNKVDIIRGEAKLVDPNTVRVMTEDGEqtYTAKNIILATGSRP--RELPGIEIDGRVIWTSDEALNL-----D 169

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822503 143 TVTKasreqdvekrkamlTFVVCGSGFTGIEmvgellewkdrLAkdnkiDA-----SEIklVVVEAAPTILNMLERRDAD 217
Cdd:PRK06416 170 EVPK--------------SLVVIGGGYIGVE-----------FA-----SAyaslgAEV--TIVEALPRILPGEDKEISK 217

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822503 218 KAERYMVKKGIEIMKNAAIVEVKPES----IVLKSGEELPTST---LIWTAGVRANsdTKDYGMESA-----RaGRLKVN 285
Cdd:PRK06416 218 LAERALKKRGIKIKTGAKAKKVEQTDdgvtVTLEDGGKEETLEadyVLVAVGRRPN--TENLGLEELgvktdR-GFIEVD 294

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 489822503 286 QYMeAEGLKDVYVVGDLAyfedeegkPTPQIVEGAEQTALTAAKSI 331
Cdd:PRK06416 295 EQL-RTNVPNIYAIGDIV--------GGPMLAHKASAEGIIAAEAI 331
PRK09754 PRK09754
phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
 82-266 1.22e-04

phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional


Pssm-ID: 170080 [Multi-domain]  Cd Length: 396  Bit Score: 44.92  E-value: 1.22e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822503  82 VTHVDHDKKVVTTEHG-SYPFDYLVLGMGGEPNDFGT-PGVGENGFTLWSWEDSVKLRNHIEEtvtkasreqdvEKRkam 159
Cdd:PRK09754  81 IKTLGRDTRELVLTNGeSWHWDQLFIATGAAARPLPLlDALGERCFTLRHAGDAARLREVLQP-----------ERS--- 146

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822503 160 ltFVVCGSGFTGIEMVGELLEWKdrlakdnkidaseIKLVVVEAAPTILNmleRRDADKAERYMV----KKGIEIMKNAA 235
Cdd:PRK09754 147 --VVIVGAGTIGLELAASATQRR-------------CKVTVIELAATVMG---RNAPPPVQRYLLqrhqQAGVRILLNNA 208

                        170       180       190
                 ....*....|....*....|....*....|....
gi 489822503 236 IVEV-KPESIVLK--SGEELPTSTLIWTAGVRAN 266
Cdd:PRK09754 209 IEHVvDGEKVELTlqSGETLQADVVIYGIGISAN 242
FadH2 COG0446
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase ...
 4-113 5.16e-03

NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase [Lipid transport and metabolism];


Pssm-ID: 440215 [Multi-domain]  Cd Length: 322  Bit Score: 39.41  E-value: 5.16e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489822503   4 KNIVLIGAGYAGV-------HaakklakkykkdKDVNITLIDRHSYhtMMTELHEVAGGRVEPTAIQYDlrrlfnrtkVN 76
Cdd:COG0446  125 KRAVVIGGGPIGLelaealrK------------RGLKVTLVERAPR--LLGVLDPEMAALLEEELREHG---------VE 181

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 489822503  77 LVT-DNVTHVDHDKK--VVTTEHGSYPFDYLVLGMGGEPN 113
Cdd:COG0446  182 LRLgETVVAIDGDDKvaVTLTDGEEIPADLVVVAPGVRPN 221
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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