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glutamate:gamma-aminobutyrate antiporter [Listeria monocytogenes]
Protein Classification
List of domain hits
Name
Accession
Description
Interval
E-value
2A0307_GadC super family
cl30095 glutamate:gamma-aminobutyrate antiporter; Lowered cutoffs from 1000/500 to 800/300, promoted ...
7-461
0e+00
glutamate:gamma-aminobutyrate antiporter; Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009 [Transport and binding proteins, Amino acids, peptides and amines]
TIGR00910 :Pssm-ID: 129988
Cd Length: 507
Bit Score: 544.11
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 7 AK T LSLFGFFAITAS LFIT VYEYPTFATSGF S LVFFLLL C G F LWF L PV S LC S AE L ATVDG YQ EGGIF G WVS K TLGE KY GF 86
Cdd:TIGR00910 3 AK K LSLFGFFAITAS MVLA VYEYPTFATSGF H LVFFLLL G G I LWF I PV A LC A AE M ATVDG WE EGGIF A WVS N TLGE RF GF 82
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 87 AAIFF Q WFQI TV GF VT MIYFI I GALSY VIS FPAL DSN PI Y KFIA V LIIFW G L TLL Q LK GTK V TA IF AK L GF VL GI T IP VL 166
Cdd:TIGR00910 83 AAIFF G WFQI AI GF IP MIYFI L GALSY ILK FPAL NED PI I KFIA A LIIFW A L AFS Q FG GTK R TA KI AK A GF FA GI L IP AF 162
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 167 A LF F L TIFHLKS G HHA AI S I TASS F I P KWTNMSS LV I --- F ML AYMGVEASA P HINE MK NP K RDYPLAMILL IFVG I T L N 243
Cdd:TIGR00910 163 I LF A L AAAYFHG G API AI E I DSHA F F P DFSKVGT LV V fva F IG AYMGVEASA S HINE LE NP G RDYPLAMILL MIAA I C L D 242
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 244 T IGG L S V A S V V P SHDLS LS S GV V QTF KA LIL QNGNSM EW I VK L IA SM IAFGV M A QVS SWIVGP TK GM QTV A D KG II P SV F 323
Cdd:TIGR00910 243 A IGG F S I A A V I P GKEIN LS A GV I QTF QT LIL HFAHEI EW L VK V IA AL IAFGV L A EIA SWIVGP SR GM FAA A Q KG LL P AA F 322
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 324 R K T NKH N VPVPL IMV QG V I V SI WA A V LTFGGGGNN V SFL T AI S LTVVIYL IG Y V LFF LA YFVL V LK KKN L E RT YQ IPGG K 403
Cdd:TIGR00910 323 A K M NKH E VPVPL VII QG I I T SI AG A I LTFGGGGNN L SFL I AI A LTVVIYL CA Y F LFF IG YFVL I LK HPD L K RT FN IPGG I 402
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 489827930 404 IV KLI V AG V G L L M S VA A IVSA F F PP TSLSKSSDMS Y EI IL AA SF I VT ILI PF F IY GI H 461
Cdd:TIGR00910 403 GG KLI I AG I G F L L S IF A FFIS F L PP ANIAGDETDM Y QE IL LI SF L VT AAL PF I IY AL H 460
Name
Accession
Description
Interval
E-value
2A0307_GadC
TIGR00910 glutamate:gamma-aminobutyrate antiporter; Lowered cutoffs from 1000/500 to 800/300, promoted ...
7-461
0e+00
glutamate:gamma-aminobutyrate antiporter; Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009 [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 129988
Cd Length: 507
Bit Score: 544.11
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 7 AK T LSLFGFFAITAS LFIT VYEYPTFATSGF S LVFFLLL C G F LWF L PV S LC S AE L ATVDG YQ EGGIF G WVS K TLGE KY GF 86
Cdd:TIGR00910 3 AK K LSLFGFFAITAS MVLA VYEYPTFATSGF H LVFFLLL G G I LWF I PV A LC A AE M ATVDG WE EGGIF A WVS N TLGE RF GF 82
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 87 AAIFF Q WFQI TV GF VT MIYFI I GALSY VIS FPAL DSN PI Y KFIA V LIIFW G L TLL Q LK GTK V TA IF AK L GF VL GI T IP VL 166
Cdd:TIGR00910 83 AAIFF G WFQI AI GF IP MIYFI L GALSY ILK FPAL NED PI I KFIA A LIIFW A L AFS Q FG GTK R TA KI AK A GF FA GI L IP AF 162
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 167 A LF F L TIFHLKS G HHA AI S I TASS F I P KWTNMSS LV I --- F ML AYMGVEASA P HINE MK NP K RDYPLAMILL IFVG I T L N 243
Cdd:TIGR00910 163 I LF A L AAAYFHG G API AI E I DSHA F F P DFSKVGT LV V fva F IG AYMGVEASA S HINE LE NP G RDYPLAMILL MIAA I C L D 242
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 244 T IGG L S V A S V V P SHDLS LS S GV V QTF KA LIL QNGNSM EW I VK L IA SM IAFGV M A QVS SWIVGP TK GM QTV A D KG II P SV F 323
Cdd:TIGR00910 243 A IGG F S I A A V I P GKEIN LS A GV I QTF QT LIL HFAHEI EW L VK V IA AL IAFGV L A EIA SWIVGP SR GM FAA A Q KG LL P AA F 322
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 324 R K T NKH N VPVPL IMV QG V I V SI WA A V LTFGGGGNN V SFL T AI S LTVVIYL IG Y V LFF LA YFVL V LK KKN L E RT YQ IPGG K 403
Cdd:TIGR00910 323 A K M NKH E VPVPL VII QG I I T SI AG A I LTFGGGGNN L SFL I AI A LTVVIYL CA Y F LFF IG YFVL I LK HPD L K RT FN IPGG I 402
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 489827930 404 IV KLI V AG V G L L M S VA A IVSA F F PP TSLSKSSDMS Y EI IL AA SF I VT ILI PF F IY GI H 461
Cdd:TIGR00910 403 GG KLI I AG I G F L L S IF A FFIS F L PP ANIAGDETDM Y QE IL LI SF L VT AAL PF I IY AL H 460
PotE
COG0531 Serine transporter YbeC, amino acid:H+ symporter family [Amino acid transport and metabolism];
1-426
5.65e-38
Serine transporter YbeC, amino acid:H+ symporter family [Amino acid transport and metabolism];
Pssm-ID: 440297 [Multi-domain]
Cd Length: 438
Bit Score: 143.88
E-value: 5.65e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 1 MKQQTSAKT L S LF GFF A ITASLF I TVYEYPTF --- A TSGFSLVFFLL L CGF L WF L P V S L CS AELA TVDG y QE GG IFGWVS 77
Cdd:COG0531 4 GESSELKRK L G LF DLV A LGVGAI I GAGIFVLP gla A GLAGPAAILAW L IAG L LA L L V A L SY AELA SAFP - RA GG AYTYAR 82
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 78 KT LG EKY GF A A IFFQWFQITVGFVTMIYFII G A LS YVISFP aldsnpi YKFIAV L IIFWG LTLL Q L K G T K VT A IFAKLGF 157
Cdd:COG0531 83 RA LG PLL GF L A GWALLLSYVLAVAAVAVAFG G Y LS SLFPAG ------- GSVLIA L VLILL LTLL N L R G V K ES A KVNNILT 155
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 158 VL GI t IPV L ALFFLTI F HLKSGHHAAISITASSF ipk WTNMSS L VIFML A YM G V EA S A PHIN E M KNPKR DY P L A M IL LIF 237
Cdd:COG0531 156 VL KL - LVL L LFIVVGL F AFDPANFTPFLPAGGGL --- SGVLAA L ALAFF A FT G F EA I A NLAE E A KNPKR NI P R A I IL SLL 231
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 238 VGIT L NTIGG L SVAS VVP SHD L SL S SGVVQTFKALILQN gnsme W IVK LIA SMIAFGVMAQVSSW I V G PTKGMQTV A DK G 317
Cdd:COG0531 232 IVGV L YILVS L ALTG VVP YDE L AA S GAPLADAAEAVFGP ----- W GAI LIA LGALLSLLGALNAS I L G ASRLLYAM A RD G 306
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 318 II P S VF R K TN - KHNV PV PL I MVQ GVI VSIWAAVL tfggggn NV SF LTAI SL TV V IY L IG Y V L FF LA YF VL VLKKKN L E R T 396
Cdd:COG0531 307 LL P K VF A K VH p RFGT PV NA I LLT GVI ALLLLLLG ------- AA SF TALA SL AS V GV L LA Y L L VA LA VI VL RRRRPD L P R P 379
410 420 430
....*....|....*....|....*....|
gi 489827930 397 YQI P G gkivk LIVAGV G L L MSVAAIVSAFF 426
Cdd:COG0531 380 FRV P L ----- PLIPIL G I L LCLFLLYLLGP 404
AA_permease_2
pfam13520 Amino acid permease;
10-447
9.52e-32
Amino acid permease;
Pssm-ID: 404414 [Multi-domain]
Cd Length: 427
Bit Score: 126.27
E-value: 9.52e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 10 L S L FGF FA ITASLF I TVYEYPT -- F A TS G FS L VFFLLLCGFLWF L P V S L CS AEL ATVDGY q E GGI FGWVSKTL G EKYG F A 87
Cdd:pfam13520 1 L G L LSA FA LVIGSV I GSGIFVA pl V A SG G PA L IVWGWIAAIIFS L A V G L VY AEL SSALPR - S GGI YVYLENAF G KFVA F L 79
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 88 A IFFQ WF QITV G FVTMIYFIIGA L SYVISFPALDSNPIYKF IA VL I I f WGLTLLQLK G TKVT A IFAKLGFV L GITI P VLA 167
Cdd:pfam13520 80 A GWSN WF AYVL G LASSASVAASY L LSALGPDLVPTTWLTYG IA IA I L - IIFAIINIR G VRES A KIQNILGI L KLLL P LIL 158
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 168 LFF L TIFHLKS G HHAAI S ITASS F I P -- KWTNMSSLVIFMLAYM G V E AS A PHIN E M K N pk R DY P L A MILLIFVGIT L NTI 245
Cdd:pfam13520 159 III L GLVTADG G GFNLL S GEWHT F F P dg WPGVFAGFLGVLWSFT G F E SA A NVSE E V K K -- R NV P K A IFIGVIIVGV L YIL 236
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 246 GGLSVAS VVP SHDLS LSSG VV Q TFKA L ILQN G NS me W IVKLIASMI A FGVMAQ V SSW IVG PTKGMQTV A DK G II P -- SV F 323
Cdd:pfam13520 237 VNIAFFG VVP DDEIA LSSG LG Q VAAL L FQAV G GK -- W GAIIVVILL A LSLLGA V NTA IVG ASRLLYAL A RD G VL P fs RF F 314
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 324 R K T NK HNV P VPL I MVQGVIVS I WAAVLTFG gggn NVSFLTAI SL TVVI YL IG Y V L FFLAYFV L VL K KKN L E R TYQ ipggk 403
Cdd:pfam13520 315 A K V NK FGS P IRA I ILTAILSL I LLLLFLLS ---- PAAYNALL SL SAYG YL LS Y L L PIIGLLI L RK K RPD L G R IPG ----- 385
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 489827930 404 iv KLI VA GV G L L M S VAA IV SA FFPP TSLSKS S DMS Y E IIL AAS F 447
Cdd:pfam13520 386 -- RWP VA IF G I L F S LFL IV AL FFPP VGPATG S SLN Y A IIL IVA F 427
PRK15238
PRK15238 inner membrane transporter YjeM; Provisional
11-428
2.60e-17
inner membrane transporter YjeM; Provisional
Pssm-ID: 237929 [Multi-domain]
Cd Length: 496
Bit Score: 84.22
E-value: 2.60e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 11 S L FGF FAITAS lfitvyeypt F ATS G F S LVFFLL L CGF L W F L P VS L CS AE LATVDGYQE GGI FG W VS K TL G E K YG F AAI F 90
Cdd:PRK15238 21 S V FGF ANSPRA ---------- F YLM G Y S AIPWYI L SAI L F F I P FA L MM AE YGSAFKDEK GGI YS W MN K SV G P K FA F IGT F 90
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 91 FQWFQITVGF V TMIYF I IGAL S YV I --------- S F PA L D S N piy KFIAV L IIF W -- GL T LLQL KG TKVT A IFAKL G -- F 157
Cdd:PRK15238 91 MWFASYIIWM V STASK I WIPF S TF I fgkdttqtw H F LG L N S T --- QVVGI L AVI W mi LV T FVAS KG INKI A KVTSI G gi A 167
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 158 V LGIT I p VL A L FFLT I FH L KS GH H A A i S I TA SSF I ---- P KWTNMSSLVI F ML ---- AY M G V EA SAPHINEMK NP KRDY P 229
Cdd:PRK15238 168 V MLLN I - VL L L VSII I LI L NG GH F A Q - P I GV SSF V tspn P AYQSPIAVLS F VV faif AY G G I EA VGGLVDKTE NP EKNF P 245
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 230 LAM I --- LL I FV G IT L NT - IG G L S V -- AS V VPSHDLS L SSGVVQTFKA L ILQN G NSMEW ------- IVKLI A SMIAFG - V 295
Cdd:PRK15238 246 KGI I iaa IV I SI G YS L AI f LW G V S T nw QQ V LSNKSVN L GNITYVLMNN L GYTL G HALGL spaaslt LGVWF A RITGLS m F 325
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 296 M A QVSSWIV --- G P T K GMQTVAD K GII P SVFR K T NK HNV P VPLIMV Q GV IVS IWAAVLT FGG GGNNVS F LTAISLTV V IY 372
Cdd:PRK15238 326 L A YTGAFFT lsy S P L K QLIEGTP K ALW P KKMT K L NK NGM P ANAMWL Q CI IVS VFILLVS FGG DAASAF F NILTLMAN V SM 405
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 489827930 373 LIG Y v LF FLAY F VLVL KKK NLE R TYQIPGG K IVK LI VAG V GL L MSVA A I V SAFFP P 428
Cdd:PRK15238 406 TLP Y - LF LAGA F PFFK KKK DID R PFVVFKT K KST LI ATI V VV L VVGF A N V FTIIQ P 460
Name
Accession
Description
Interval
E-value
2A0307_GadC
TIGR00910 glutamate:gamma-aminobutyrate antiporter; Lowered cutoffs from 1000/500 to 800/300, promoted ...
7-461
0e+00
glutamate:gamma-aminobutyrate antiporter; Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009 [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 129988
Cd Length: 507
Bit Score: 544.11
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 7 AK T LSLFGFFAITAS LFIT VYEYPTFATSGF S LVFFLLL C G F LWF L PV S LC S AE L ATVDG YQ EGGIF G WVS K TLGE KY GF 86
Cdd:TIGR00910 3 AK K LSLFGFFAITAS MVLA VYEYPTFATSGF H LVFFLLL G G I LWF I PV A LC A AE M ATVDG WE EGGIF A WVS N TLGE RF GF 82
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 87 AAIFF Q WFQI TV GF VT MIYFI I GALSY VIS FPAL DSN PI Y KFIA V LIIFW G L TLL Q LK GTK V TA IF AK L GF VL GI T IP VL 166
Cdd:TIGR00910 83 AAIFF G WFQI AI GF IP MIYFI L GALSY ILK FPAL NED PI I KFIA A LIIFW A L AFS Q FG GTK R TA KI AK A GF FA GI L IP AF 162
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 167 A LF F L TIFHLKS G HHA AI S I TASS F I P KWTNMSS LV I --- F ML AYMGVEASA P HINE MK NP K RDYPLAMILL IFVG I T L N 243
Cdd:TIGR00910 163 I LF A L AAAYFHG G API AI E I DSHA F F P DFSKVGT LV V fva F IG AYMGVEASA S HINE LE NP G RDYPLAMILL MIAA I C L D 242
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 244 T IGG L S V A S V V P SHDLS LS S GV V QTF KA LIL QNGNSM EW I VK L IA SM IAFGV M A QVS SWIVGP TK GM QTV A D KG II P SV F 323
Cdd:TIGR00910 243 A IGG F S I A A V I P GKEIN LS A GV I QTF QT LIL HFAHEI EW L VK V IA AL IAFGV L A EIA SWIVGP SR GM FAA A Q KG LL P AA F 322
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 324 R K T NKH N VPVPL IMV QG V I V SI WA A V LTFGGGGNN V SFL T AI S LTVVIYL IG Y V LFF LA YFVL V LK KKN L E RT YQ IPGG K 403
Cdd:TIGR00910 323 A K M NKH E VPVPL VII QG I I T SI AG A I LTFGGGGNN L SFL I AI A LTVVIYL CA Y F LFF IG YFVL I LK HPD L K RT FN IPGG I 402
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 489827930 404 IV KLI V AG V G L L M S VA A IVSA F F PP TSLSKSSDMS Y EI IL AA SF I VT ILI PF F IY GI H 461
Cdd:TIGR00910 403 GG KLI I AG I G F L L S IF A FFIS F L PP ANIAGDETDM Y QE IL LI SF L VT AAL PF I IY AL H 460
PotE
COG0531 Serine transporter YbeC, amino acid:H+ symporter family [Amino acid transport and metabolism];
1-426
5.65e-38
Serine transporter YbeC, amino acid:H+ symporter family [Amino acid transport and metabolism];
Pssm-ID: 440297 [Multi-domain]
Cd Length: 438
Bit Score: 143.88
E-value: 5.65e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 1 MKQQTSAKT L S LF GFF A ITASLF I TVYEYPTF --- A TSGFSLVFFLL L CGF L WF L P V S L CS AELA TVDG y QE GG IFGWVS 77
Cdd:COG0531 4 GESSELKRK L G LF DLV A LGVGAI I GAGIFVLP gla A GLAGPAAILAW L IAG L LA L L V A L SY AELA SAFP - RA GG AYTYAR 82
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 78 KT LG EKY GF A A IFFQWFQITVGFVTMIYFII G A LS YVISFP aldsnpi YKFIAV L IIFWG LTLL Q L K G T K VT A IFAKLGF 157
Cdd:COG0531 83 RA LG PLL GF L A GWALLLSYVLAVAAVAVAFG G Y LS SLFPAG ------- GSVLIA L VLILL LTLL N L R G V K ES A KVNNILT 155
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 158 VL GI t IPV L ALFFLTI F HLKSGHHAAISITASSF ipk WTNMSS L VIFML A YM G V EA S A PHIN E M KNPKR DY P L A M IL LIF 237
Cdd:COG0531 156 VL KL - LVL L LFIVVGL F AFDPANFTPFLPAGGGL --- SGVLAA L ALAFF A FT G F EA I A NLAE E A KNPKR NI P R A I IL SLL 231
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 238 VGIT L NTIGG L SVAS VVP SHD L SL S SGVVQTFKALILQN gnsme W IVK LIA SMIAFGVMAQVSSW I V G PTKGMQTV A DK G 317
Cdd:COG0531 232 IVGV L YILVS L ALTG VVP YDE L AA S GAPLADAAEAVFGP ----- W GAI LIA LGALLSLLGALNAS I L G ASRLLYAM A RD G 306
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 318 II P S VF R K TN - KHNV PV PL I MVQ GVI VSIWAAVL tfggggn NV SF LTAI SL TV V IY L IG Y V L FF LA YF VL VLKKKN L E R T 396
Cdd:COG0531 307 LL P K VF A K VH p RFGT PV NA I LLT GVI ALLLLLLG ------- AA SF TALA SL AS V GV L LA Y L L VA LA VI VL RRRRPD L P R P 379
410 420 430
....*....|....*....|....*....|
gi 489827930 397 YQI P G gkivk LIVAGV G L L MSVAAIVSAFF 426
Cdd:COG0531 380 FRV P L ----- PLIPIL G I L LCLFLLYLLGP 404
AA_permease_2
pfam13520 Amino acid permease;
10-447
9.52e-32
Amino acid permease;
Pssm-ID: 404414 [Multi-domain]
Cd Length: 427
Bit Score: 126.27
E-value: 9.52e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 10 L S L FGF FA ITASLF I TVYEYPT -- F A TS G FS L VFFLLLCGFLWF L P V S L CS AEL ATVDGY q E GGI FGWVSKTL G EKYG F A 87
Cdd:pfam13520 1 L G L LSA FA LVIGSV I GSGIFVA pl V A SG G PA L IVWGWIAAIIFS L A V G L VY AEL SSALPR - S GGI YVYLENAF G KFVA F L 79
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 88 A IFFQ WF QITV G FVTMIYFIIGA L SYVISFPALDSNPIYKF IA VL I I f WGLTLLQLK G TKVT A IFAKLGFV L GITI P VLA 167
Cdd:pfam13520 80 A GWSN WF AYVL G LASSASVAASY L LSALGPDLVPTTWLTYG IA IA I L - IIFAIINIR G VRES A KIQNILGI L KLLL P LIL 158
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 168 LFF L TIFHLKS G HHAAI S ITASS F I P -- KWTNMSSLVIFMLAYM G V E AS A PHIN E M K N pk R DY P L A MILLIFVGIT L NTI 245
Cdd:pfam13520 159 III L GLVTADG G GFNLL S GEWHT F F P dg WPGVFAGFLGVLWSFT G F E SA A NVSE E V K K -- R NV P K A IFIGVIIVGV L YIL 236
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 246 GGLSVAS VVP SHDLS LSSG VV Q TFKA L ILQN G NS me W IVKLIASMI A FGVMAQ V SSW IVG PTKGMQTV A DK G II P -- SV F 323
Cdd:pfam13520 237 VNIAFFG VVP DDEIA LSSG LG Q VAAL L FQAV G GK -- W GAIIVVILL A LSLLGA V NTA IVG ASRLLYAL A RD G VL P fs RF F 314
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 324 R K T NK HNV P VPL I MVQGVIVS I WAAVLTFG gggn NVSFLTAI SL TVVI YL IG Y V L FFLAYFV L VL K KKN L E R TYQ ipggk 403
Cdd:pfam13520 315 A K V NK FGS P IRA I ILTAILSL I LLLLFLLS ---- PAAYNALL SL SAYG YL LS Y L L PIIGLLI L RK K RPD L G R IPG ----- 385
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 489827930 404 iv KLI VA GV G L L M S VAA IV SA FFPP TSLSKS S DMS Y E IIL AAS F 447
Cdd:pfam13520 386 -- RWP VA IF G I L F S LFL IV AL FFPP VGPATG S SLN Y A IIL IVA F 427
PRK15238
PRK15238 inner membrane transporter YjeM; Provisional
11-428
2.60e-17
inner membrane transporter YjeM; Provisional
Pssm-ID: 237929 [Multi-domain]
Cd Length: 496
Bit Score: 84.22
E-value: 2.60e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 11 S L FGF FAITAS lfitvyeypt F ATS G F S LVFFLL L CGF L W F L P VS L CS AE LATVDGYQE GGI FG W VS K TL G E K YG F AAI F 90
Cdd:PRK15238 21 S V FGF ANSPRA ---------- F YLM G Y S AIPWYI L SAI L F F I P FA L MM AE YGSAFKDEK GGI YS W MN K SV G P K FA F IGT F 90
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 91 FQWFQITVGF V TMIYF I IGAL S YV I --------- S F PA L D S N piy KFIAV L IIF W -- GL T LLQL KG TKVT A IFAKL G -- F 157
Cdd:PRK15238 91 MWFASYIIWM V STASK I WIPF S TF I fgkdttqtw H F LG L N S T --- QVVGI L AVI W mi LV T FVAS KG INKI A KVTSI G gi A 167
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 158 V LGIT I p VL A L FFLT I FH L KS GH H A A i S I TA SSF I ---- P KWTNMSSLVI F ML ---- AY M G V EA SAPHINEMK NP KRDY P 229
Cdd:PRK15238 168 V MLLN I - VL L L VSII I LI L NG GH F A Q - P I GV SSF V tspn P AYQSPIAVLS F VV faif AY G G I EA VGGLVDKTE NP EKNF P 245
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 230 LAM I --- LL I FV G IT L NT - IG G L S V -- AS V VPSHDLS L SSGVVQTFKA L ILQN G NSMEW ------- IVKLI A SMIAFG - V 295
Cdd:PRK15238 246 KGI I iaa IV I SI G YS L AI f LW G V S T nw QQ V LSNKSVN L GNITYVLMNN L GYTL G HALGL spaaslt LGVWF A RITGLS m F 325
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 296 M A QVSSWIV --- G P T K GMQTVAD K GII P SVFR K T NK HNV P VPLIMV Q GV IVS IWAAVLT FGG GGNNVS F LTAISLTV V IY 372
Cdd:PRK15238 326 L A YTGAFFT lsy S P L K QLIEGTP K ALW P KKMT K L NK NGM P ANAMWL Q CI IVS VFILLVS FGG DAASAF F NILTLMAN V SM 405
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 489827930 373 LIG Y v LF FLAY F VLVL KKK NLE R TYQIPGG K IVK LI VAG V GL L MSVA A I V SAFFP P 428
Cdd:PRK15238 406 TLP Y - LF LAGA F PFFK KKK DID R PFVVFKT K KST LI ATI V VV L VVGF A N V FTIIQ P 460
PRK10644
PRK10644 arginine/agmatine antiporter;
52-396
3.87e-13
arginine/agmatine antiporter;
Pssm-ID: 182613 [Multi-domain]
Cd Length: 445
Bit Score: 70.97
E-value: 3.87e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 52 L PV S LCS A ELATV D G y QE GG IFGWVSKTL G EKY G FAAIFFQ W FQITV G FVT M IYFII G A LSY V is FP A L d SN P IYKF I AV 131
Cdd:PRK10644 54 L GL S MVY A KMSSL D P - SP GG SYAYARRCF G PFL G YQTNVLY W LACWI G NIA M VVIGV G Y LSY F -- FP I L - KD P LVLT I TC 129
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 132 LIIF W GLT LL QLK G ---- T K V T A IFAK L GFVLGIT I P V LAL F FLTIFHLKSGHHAAISI T ASSF ipkwtn M S S L VIFMLA 207
Cdd:PRK10644 130 VVVL W IFV LL NIV G pkmi T R V Q A VATV L ALIPIVG I A V FGW F WFRGETYMAAWNVSGLG T FGAI ------ Q S T L NVTLWS 203
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 208 YM GVE ASAPHINEM KNPKR DY P L A M I LLIFVGITLNTIGGLSVASVV P SHD L SL S SGVVQTFKALI L qn G NSMEW IV KLI 287
Cdd:PRK10644 204 FI GVE SASVAAGVV KNPKR NV P I A T I GGVLIAAVCYVLSSTAIMGMI P NAA L RV S ASPFGDAARMA L -- G DTAGA IV SFC 281
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 288 A smi A F G VMAQVSS W IVGPTKGMQTV AD K G II P SV F RKT NK HNV PV PLIMVQ GV IVS I W aa V L TFGGGGNNVS F LTAI S L 367
Cdd:PRK10644 282 A --- A A G CLGSLGG W TLLAGQTAKAA AD D G LF P PI F ARV NK AGT PV AGLLIV GV LMT I F -- Q L SSISPNASKE F GLVS S V 356
330 340
....*....|....*....|....*....
gi 489827930 368 T V VIY L IG Y VLFFL A YFV L VLKKKNLE R T 396
Cdd:PRK10644 357 S V IFT L VP Y LYTCA A LLL L GHGHFGKA R P 385
2A0305
TIGR00908 ethanolamine permease; The three genes used as the seed for this model (from Burkholderia ...
70-450
3.72e-11
ethanolamine permease; The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 129986 [Multi-domain]
Cd Length: 442
Bit Score: 64.86
E-value: 3.72e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 70 GG IF G WVSKTL G EKY GF aaif FQWFQ I TVG F V --- TM I YFI IGA LSYVI s FP ALDSNPIYKFIAVLI I FWGLTLLQLKGT 146
Cdd:TIGR00908 71 GG GY G FARRAF G PWG GF ---- LAGTA I LIE F A fap PA I ACF IGA YCESL - FP VGPGWLAALVFYIVF I GINILGVGEAAK 145
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 147 KVTAIF A KLGFV LG IT I PVLALF F LTIFHLKSGHHA A I S ITASSFIPKWTNMSSLVI F M LA YM GV EAS A phi N E M KNPKR 226
Cdd:TIGR00908 146 LEFVVT A VAIIA LG VF I GAMVPH F DSANLFNGPQTG A S S FLPGAYVGVFAAIPFAIW F F LA VE GV AMA A --- E E T KNPKR 222
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 227 D Y P LAM I LL I FVGIT L NTIGGLSVASVVPSHD L SL S - SGVVQTFKALILQN gnsm E W IVKLIASMIA FG VM A QVSSW I V G 305
Cdd:TIGR00908 223 D I P RGL I GA I LTLLA L AAGILVVGPGAADAKE L MG S n NPLPEALESIYGGS ---- T W MSQFVNLVGL FG LI A SFHGI I Y G 298
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 306 PTKGMQTVADK G II P SVFR K T N KHNV PV PL I M V Q GVI V si WAAV LT FGGG gnnvsfl TA I SLT V VIYL I G YVL FFL A Y F V 385
Cdd:TIGR00908 299 YSRQIFALSRA G YL P ESLS K V N RKKA PV LA I V V P GVI G -- FGLS LT GQTA ------- LI I LVS V FGAI I S YVL SMA A H F T 369
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489827930 386 L VLKKKNL ER T Y QI PGG kivk LIVA GV G L LMSVA A I V SA F FPPTSLSKSSDMSYEIILAAS F IVT 450
Cdd:TIGR00908 370 L RIRRPDM ER P Y RT PGG ---- ILTP GV A L VLACV A L V TG F YVDPRVVVGAVAIFVVLIGYY F LYS 430
cadB
PRK10435 cadaverine/lysine antiporter;
108-456
1.58e-09
cadaverine/lysine antiporter;
Pssm-ID: 182458
Cd Length: 435
Bit Score: 59.76
E-value: 1.58e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 108 I G A L SY VIS F PALDSN PI YKF IA VLI I F W GL T LLQLK G TKVTAIFAKL G F VL g IT IPV LALFFLTIFHLKSGHH AA ISI T 187
Cdd:PRK10435 102 I T A V SY LST F FPVLND PI PAG IA CIA I V W VF T FVNML G GTWVSRLTTI G L VL - VL IPV VGTAIVGWHWFDAATY AA NWN T 180
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 188 ASSFIPKWT n MS S LVIFML A YM GVE AS A PHINEM KNPKR DY PLA MI L LIFVGITLNTIGGLSVASVV P SHDLSL S SGVVQ 267
Cdd:PRK10435 181 SDTTDGHAI - IK S ILLCLW A FV GVE SA A VSTGMV KNPKR TV PLA TM L GTGLAGIIYIAATQVISGMF P ASVMAA S GAPFA 259
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 268 TFKAL IL Q N gnsme W IVK L IASMI AF GVMAQVS SW IVGPTKGMQTV A DK G II P S V FRKTN K HNV P VPLIMVQG V IVSIWA 347
Cdd:PRK10435 260 ISAST IL G N ----- W AAP L VSAFT AF ACLTSLG SW MMLVGQAGVRA A ND G NF P K V YGEVD K NGI P KKGLLLAA V KMTALM 334
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 348 AVL T F gggg N N V S FLT A IS L TVVIYL I GYV L FF L A YF VLVL kkk N L E R TYQIPGGKI V K LI VAGV G LLMSVA A IVS A ffp 427
Cdd:PRK10435 335 ILI T L ---- M N S S GGK A SD L FGELTG I AVL L TM L P YF YSCV --- D L I R FEGVNIRNF V S LI CSVL G CVFCFI A LMG A --- 404
330 340
....*....|....*....|....*....
gi 489827930 428 ptslskssd M S Y E ii LA AS FIV TIL I PF F 456
Cdd:PRK10435 405 --------- S S F E -- LA GT FIV SLI I LM F 422
AA_permease
pfam00324 Amino acid permease;
29-453
9.14e-09
Amino acid permease;
Pssm-ID: 366028 [Multi-domain]
Cd Length: 467
Bit Score: 57.33
E-value: 9.14e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 29 YPTFATS G FSLVFFLL L CGFLWFLP V S L CSA E LA T V d G YQE GG IFGWV S KT LG EKY GFA AIFFQ W FQ itvg FV T MIYFII 108
Cdd:pfam00324 20 GSVLGQA G PAGALLGY L ISGVVIFL V M L SLG E IS T N - G PVS GG FYTYA S RF LG PSL GFA TGWNY W LS ---- WI T VLALEL 94
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 109 G A L S YV I S F PA L DSNPI Y KFIAVLIIFWG LT LLQ L K G T K VTAIFAKLGFVLG I TIPVLALFFLT I FHLK ------- SGHH 181
Cdd:pfam00324 95 T A A S IL I Q F WE L VPDIP Y LWVWGAVFLVL LT IIN L V G V K WYGEAEFWFALIK I IAIIGFIIVGI I LLSG gnpndga IFRY 174
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 182 AAISITASS F I P KWTN -- M S SL VI FML A YM G V E ASAPHIN E M KNP KRDY P L A MILL I FVGITLNTIGG L SVASV VP SH D L 259
Cdd:pfam00324 175 LGDNGGKNN F P P GFGK gf I S VF VI AFF A FT G I E LVGIAAG E V KNP EKSI P K A ILQV I WRITIFYILSL L AIGLL VP WN D P 254
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 260 S L SSGVVQTFKALILQNGNSM ewi VKLI A SM I AFGVMAQV ---- S S WIVGPTKGMQTV A DK G II P SVFR K TN K HN VP VPL 335
Cdd:pfam00324 255 G L LNDSASAASPFVIFFKFLG --- ISGL A PL I NAVILTAA lsaa N S SLYSGSRMLYSL A RD G LA P KFLK K VD K RG VP LRA 331
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 336 I M V QG VI -- VSIWA A V L TFGGGG N NVSFLTAI S LTV V IY LI GYVLFFLAYFVLVLKKKNL E RTYQI P G G KIVKLIVAGVG 413
Cdd:pfam00324 332 I L V SM VI sl LALLL A S L NPAIVF N FLLAISGL S GLI V WG LI SLSHLRFRKAFKYQGRSID E LPFKA P L G PLGVILGLAAI 411
410 420 430 440
....*....|....*....|....*....|....*....|
gi 489827930 414 LLMSVAAIVS AF F P PTSLS K SSDMSYEIILAASFIVTIL I 453
Cdd:pfam00324 412 IIILIIQFLY AF L P VPGGP K NWGAGSFAAAYLIVLLFLI I 451
potE
PRK10655 putrescine transporter; Provisional
108-424
9.52e-07
putrescine transporter; Provisional
Pssm-ID: 182622
Cd Length: 438
Bit Score: 51.18
E-value: 9.52e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 108 I G A LS Y VISFPALDSN P IYKFI A VLIIF W GL T LLQLK G TKV T A ifa KLG -- F V L G IT IPV LA L FFLTI F HLKS ghhaai S 185
Cdd:PRK10655 104 I S A VG Y GTELFGATLS P VQICL A TIGVL W LC T VANFG G ARI T G --- QIS sv T V W G VI IPV VG L SIIGW F WFSP ------ S 174
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 186 ITASSFI P KWTNM ----- SS LVIFML A YM G V E ASAPHINEMK NP K R DY P L A MI ------ LL I FV g ITL N T I G G lsvas V V 254
Cdd:PRK10655 175 LYVAAWN P HHLPF fsavg SS IAMTLW A FL G L E SACANSDAVE NP E R NV P I A VL ggtlga AV I YI - VST N V I A G ----- I V 248
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 255 P SHD L SL S SGVVQTFK A LILQ ngnsm EWIV K LI asm I A FG VM AQVS S --- W IVGPTKGMQTV AD K G II P SV F RKTN K HNV 331
Cdd:PRK10655 249 P NME L AN S TAPFGLAF A QMFN ----- PTVG K IV --- M A LM VM SCCG S llg W QFTIAQVFKSS AD E G YF P KI F SRVT K VDA 320
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 332 PV PLIMVQG VI V S I w AAVL T FGGGG N N v S F LTAIS L T VV IYL I G Y V L FFL A YFV lvlkkkn LERTYQI P GG K I - V KLIV A 410
Cdd:PRK10655 321 PV QGMLIIV VI Q S L - LSLM T ISPSL N S - Q F NVLVN L A VV TNI I P Y I L SMA A LVI ------- IQKVANV P PS K A k V ANFI A 391
330
....*....|....
gi 489827930 411 G VG L L M S VA A IV S A 424
Cdd:PRK10655 392 F VG A L Y S FY A LY S S 405
PRK11021
PRK11021 putative transporter; Provisional
132-241
6.59e-04
putative transporter; Provisional
Pssm-ID: 236823 [Multi-domain]
Cd Length: 410
Bit Score: 41.82
E-value: 6.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489827930 132 L IIFWG L T LL Q L K G TKVT A ifa K L GF V -- L G I TIP V L A LFFLTIFHL ksghh A A I SIT A SSF I PKWTNMSS L VIFMLAYM 209
Cdd:PRK11021 120 L LTLAL L W LL N L R G ASSS A --- N L QT V ia L L I VAL V V A IWWAGDIKP ----- A D I PFP A PGS I EWSGLFAA L GVMFWCFV 191
90 100 110
....*....|....*....|....*....|...
gi 489827930 210 G V EA S A PHIN E M KNP K RD Y P L A MIL - L IFV G IT 241
Cdd:PRK11021 192 G I EA F A HLAS E F KNP E RD F P R A LMI g L LLA G LV 224
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
