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Conserved domains on  [gi|489829364|ref|WP_003733118|]
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DUF1128 domain-containing protein [Listeria monocytogenes]

Protein Classification

DUF1128 domain-containing protein( domain architecture ID 10008873)

DUF1128 domain-containing protein similar to Bacillus subtilis YfkK

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YfkK COG4840
Uncharacterized conserved protein YfkK, UPF0435 family [Function unknown];
1-73 5.33e-29

Uncharacterized conserved protein YfkK, UPF0435 family [Function unknown];


:

Pssm-ID: 443868  Cd Length: 74  Bit Score: 98.08  E-value: 5.33e-29
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489829364  1 MNLETPSQENLNFMLTEITTKLKMVNVGVFENLELDSVDYNALVDIYQLIKRKSTFSPREMQLFAEELRRVRK 73
Cdd:COG4840   1 MNLSEPSTENLAYMIEEIKDKLRMVNASAMDPEDFDLEKYEDLKDLYDMVMKKNQFSPSEMQAIAEELGSLRK 73
 
Name Accession Description Interval E-value
YfkK COG4840
Uncharacterized conserved protein YfkK, UPF0435 family [Function unknown];
1-73 5.33e-29

Uncharacterized conserved protein YfkK, UPF0435 family [Function unknown];


Pssm-ID: 443868  Cd Length: 74  Bit Score: 98.08  E-value: 5.33e-29
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489829364  1 MNLETPSQENLNFMLTEITTKLKMVNVGVFENLELDSVDYNALVDIYQLIKRKSTFSPREMQLFAEELRRVRK 73
Cdd:COG4840   1 MNLSEPSTENLAYMIEEIKDKLRMVNASAMDPEDFDLEKYEDLKDLYDMVMKKNQFSPSEMQAIAEELGSLRK 73
DUF1128 pfam06569
Protein of unknown function (DUF1128); This family consists of several short, hypothetical ...
 3-73 6.43e-28

Protein of unknown function (DUF1128); This family consists of several short, hypothetical bacterial proteins of unknown function.


Pssm-ID: 399518  Cd Length: 71  Bit Score: 95.04  E-value: 6.43e-28
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489829364   3 LETPSQENLNFMLTEITTKLKMVNVGVFENLELDSVDYNALVDIYQLIKRKSTFSPREMQLFAEELRRVRK 73
Cdd:pfam06569  1 LSEPSQENLEYMIEEIKEKLNMVNGAAMKPEDFSLDKYEDLKDLYEMVMKKDSFSPSEMQAIVEELGRLRK 71
 
Name Accession Description Interval E-value
YfkK COG4840
Uncharacterized conserved protein YfkK, UPF0435 family [Function unknown];
1-73 5.33e-29

Uncharacterized conserved protein YfkK, UPF0435 family [Function unknown];


Pssm-ID: 443868  Cd Length: 74  Bit Score: 98.08  E-value: 5.33e-29
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489829364  1 MNLETPSQENLNFMLTEITTKLKMVNVGVFENLELDSVDYNALVDIYQLIKRKSTFSPREMQLFAEELRRVRK 73
Cdd:COG4840   1 MNLSEPSTENLAYMIEEIKDKLRMVNASAMDPEDFDLEKYEDLKDLYDMVMKKNQFSPSEMQAIAEELGSLRK 73
DUF1128 pfam06569
Protein of unknown function (DUF1128); This family consists of several short, hypothetical ...
 3-73 6.43e-28

Protein of unknown function (DUF1128); This family consists of several short, hypothetical bacterial proteins of unknown function.


Pssm-ID: 399518  Cd Length: 71  Bit Score: 95.04  E-value: 6.43e-28
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489829364   3 LETPSQENLNFMLTEITTKLKMVNVGVFENLELDSVDYNALVDIYQLIKRKSTFSPREMQLFAEELRRVRK 73
Cdd:pfam06569  1 LSEPSQENLEYMIEEIKEKLNMVNGAAMKPEDFSLDKYEDLKDLYEMVMKKDSFSPSEMQAIVEELGRLRK 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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