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Conserved domains on  [gi|489863162|ref|WP_003766777|]
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hypothetical protein [Listeria innocua]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SA1362_fam super family cl49520
SA1362 family protein; Members of this family include SA1362 from Staphylococcus aureus. The ...
 6-65 1.90e-04

SA1362 family protein; Members of this family include SA1362 from Staphylococcus aureus. The N-terminal 50 amino acids are highly hydrophobic and suggest two transmembrane alpha-helical regions. The C-terminal region rich in basic residues, variable in length, and often somewhat repetitive. The family is widespread in Gram-positive species.


The actual alignment was detected with superfamily member NF041554:

Pssm-ID: 469439  Cd Length: 70  Bit Score: 36.27  E-value: 1.90e-04
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489863162  6 LIVIILLALVGIGLLMGGFKSFFI--LLISILIGTLIFTLLLRLFANRKT---DTNYQKAVKQSK 65
Cdd:NF041554  5 FYVIIGLAAIGLVSQLFTNPGGLLrsILIIAVIGAIIYFIYYFFFLRRRGggeQKKYKKAVKQSK 69
 
Name Accession Description Interval E-value
SA1362_fam NF041554
SA1362 family protein; Members of this family include SA1362 from Staphylococcus aureus. The ...
 6-65 1.90e-04

SA1362 family protein; Members of this family include SA1362 from Staphylococcus aureus. The N-terminal 50 amino acids are highly hydrophobic and suggest two transmembrane alpha-helical regions. The C-terminal region rich in basic residues, variable in length, and often somewhat repetitive. The family is widespread in Gram-positive species.


Pssm-ID: 469439  Cd Length: 70  Bit Score: 36.27  E-value: 1.90e-04
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489863162  6 LIVIILLALVGIGLLMGGFKSFFI--LLISILIGTLIFTLLLRLFANRKT---DTNYQKAVKQSK 65
Cdd:NF041554  5 FYVIIGLAAIGLVSQLFTNPGGLLrsILIIAVIGAIIYFIYYFFFLRRRGggeQKKYKKAVKQSK 69
 
Name Accession Description Interval E-value
SA1362_fam NF041554
SA1362 family protein; Members of this family include SA1362 from Staphylococcus aureus. The ...
 6-65 1.90e-04

SA1362 family protein; Members of this family include SA1362 from Staphylococcus aureus. The N-terminal 50 amino acids are highly hydrophobic and suggest two transmembrane alpha-helical regions. The C-terminal region rich in basic residues, variable in length, and often somewhat repetitive. The family is widespread in Gram-positive species.


Pssm-ID: 469439  Cd Length: 70  Bit Score: 36.27  E-value: 1.90e-04
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489863162  6 LIVIILLALVGIGLLMGGFKSFFI--LLISILIGTLIFTLLLRLFANRKT---DTNYQKAVKQSK 65
Cdd:NF041554  5 FYVIIGLAAIGLVSQLFTNPGGLLrsILIIAVIGAIIYFIYYFFFLRRRGggeQKKYKKAVKQSK 69
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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