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Conserved domains on  [gi|489866599|ref|WP_003770183|]
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Gfo/Idh/MocA family protein [Listeria innocua]

Protein Classification

Gfo/Idh/MocA family protein( domain architecture ID 11430574)

Gfo/Idh/MocA family protein belonging to the NAD(P)(+)-binding Rossmann-fold superfamily, may function as an oxidoreductase that catalyzes the transfer of electrons from one molecule, the electron donor or reductant, to another molecule, the electron acceptor or oxidant

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
MviM COG0673
Predicted dehydrogenase [General function prediction only];
1-249 2.36e-65

Predicted dehydrogenase [General function prediction only];


:

Pssm-ID: 440437 [Multi-domain]  Cd Length: 295  Bit Score: 207.47  E-value: 2.36e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489866599   1 MKRLNWAILGPGSIAHQFAEGMQGLNR-EIYAVGARSLEKGQVFANQYGIeKVYDDFDAMLTDPMIDVVYIATPHSNHYE 79
Cdd:COG0673    1 MDKLRVGIIGAGGIGRAHAPALAALPGvELVAVADRDPERAEAFAEEYGV-RVYTDYEELLADPDIDAVVIATPNHLHAE 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489866599  80 FIMKSLHNGKHVLAEKAITVSSAELNEINALAKEKGLIVKEAMTIFHMPLYKKLREIVDSGAIGKLKIIQVAFGSAKEKD 159
Cdd:COG0673   80 LAIAALEAGKHVLCEKPLALTLEEARELVAAAEEAGVVLMVGFNRRFDPAVRAARELIDSGAIGEIRSVRARFGHPRPAG 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489866599 160 PKNRFYNMDLA-GGALLDIGTYALSFARYFLSAAPDEVLTTMKKF---ETGVDEQSGILLKNKEEELAVVSLSFRAKVPK 235
Cdd:COG0673  160 PADWRFDPELAgGGALLDLGIHDIDLARWLLGSEPESVSATGGRLvpdRVEVDDTAAATLRFANGAVATLEASWVAPGGE 239
                        250
                 ....*....|....*..
gi 489866599 236 RG---VIACEEGFITVD 249
Cdd:COG0673  240 RDerlEVYGTKGTLFVD 256
 
Name Accession Description Interval E-value
MviM COG0673
Predicted dehydrogenase [General function prediction only];
1-249 2.36e-65

Predicted dehydrogenase [General function prediction only];


Pssm-ID: 440437 [Multi-domain]  Cd Length: 295  Bit Score: 207.47  E-value: 2.36e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489866599   1 MKRLNWAILGPGSIAHQFAEGMQGLNR-EIYAVGARSLEKGQVFANQYGIeKVYDDFDAMLTDPMIDVVYIATPHSNHYE 79
Cdd:COG0673    1 MDKLRVGIIGAGGIGRAHAPALAALPGvELVAVADRDPERAEAFAEEYGV-RVYTDYEELLADPDIDAVVIATPNHLHAE 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489866599  80 FIMKSLHNGKHVLAEKAITVSSAELNEINALAKEKGLIVKEAMTIFHMPLYKKLREIVDSGAIGKLKIIQVAFGSAKEKD 159
Cdd:COG0673   80 LAIAALEAGKHVLCEKPLALTLEEARELVAAAEEAGVVLMVGFNRRFDPAVRAARELIDSGAIGEIRSVRARFGHPRPAG 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489866599 160 PKNRFYNMDLA-GGALLDIGTYALSFARYFLSAAPDEVLTTMKKF---ETGVDEQSGILLKNKEEELAVVSLSFRAKVPK 235
Cdd:COG0673  160 PADWRFDPELAgGGALLDLGIHDIDLARWLLGSEPESVSATGGRLvpdRVEVDDTAAATLRFANGAVATLEASWVAPGGE 239
                        250
                 ....*....|....*..
gi 489866599 236 RG---VIACEEGFITVD 249
Cdd:COG0673  240 RDerlEVYGTKGTLFVD 256
GFO_IDH_MocA pfam01408
Oxidoreductase family, NAD-binding Rossmann fold; This family of enzymes utilize NADP or NAD. ...
4-118 6.81e-27

Oxidoreductase family, NAD-binding Rossmann fold; This family of enzymes utilize NADP or NAD. This family is called the GFO/IDH/MOCA family in swiss-prot.


Pssm-ID: 426248 [Multi-domain]  Cd Length: 120  Bit Score: 102.29  E-value: 6.81e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489866599    4 LNWAILGPGSIAHQFAEGMQGLNR--EIYAVGARSLEKGQVFANQYGIEkVYDDFDAMLTDPMIDVVYIATPHSNHYEFI 81
Cdd:pfam01408   1 IRVGIIGAGKIGSKHARALNASQPgaELVAILDPNSERAEAVAESFGVE-VYSDLEELLNDPEIDAVIVATPNGLHYDLA 79
                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 489866599   82 MKSLHNGKHVLAEKAITVSSAELNEINALAKEKGLIV 118
Cdd:pfam01408  80 IAALEAGKHVLCEKPLATTVEEAKELVELAKKKGVRV 116
PRK11579 PRK11579
putative oxidoreductase; Provisional
51-152 9.83e-12

putative oxidoreductase; Provisional


Pssm-ID: 183212 [Multi-domain]  Cd Length: 346  Bit Score: 64.74  E-value: 9.83e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489866599  51 KVYDDFDAMLTDPMIDVVYIATPHSNHYEFIMKSLHNGKHVLAEKAITVSSAELNEINALAKEKGLIvkeaMTIFHMPLY 130
Cdd:PRK11579  51 TVVSEPQHLFNDPNIDLIVIPTPNDTHFPLAKAALEAGKHVVVDKPFTVTLSQARELDALAKSAGRV----LSVFHNRRW 126
                         90       100
                 ....*....|....*....|....*.
gi 489866599 131 KK----LREIVDSGAIGKLKIIQVAF 152
Cdd:PRK11579 127 DSdfltLKALLAEGVLGEVAYFESHF 152
nat-AmDH_N_like cd24146
N-terminal NAD(P)-binding domain of native NAD(P)H-dependent amine dehydrogenases (nat-AmDHs) ...
51-118 4.80e-03

N-terminal NAD(P)-binding domain of native NAD(P)H-dependent amine dehydrogenases (nat-AmDHs) and similar proteins; The family corresponds to a group of native NAD(P)H-dependent amine dehydrogenases (nat-AmDHs) that catalyze the reductive amination of ketone and aldehyde substrates using NAD(P)H as the hydride source. nat-AmDHs can naturally catalyze the amination of 'neutral' carbonyl compounds using ammonia. They possess tremendous potential for the efficient asymmetric synthesis of alpha-chiral amines. The family also contains 2,4-diaminopentanoate dehydrogenase (DAPDH) and similar proteins. DAPDH, also known as ORD, is involved in the ornithine fermentation pathway. It catalyzes the oxidative deamination of (2R,4S)-2,4-diaminopentanoate ((2R,4S)-DAP) to yield 2-amino-4-ketopentanoate (AKP). Although DAPDH is more efficient with (2R,4S)-DAP, the diastereoisomer (2R,4R)-DAP can also be metabolized. Different forms of DAPDH exist which utilize NAD(+) (EC 1.4.1.26) or NAD(+)/NADP(+) (EC 1.4.1.12). Members of this family contain an N-terminal Rossmann fold NAD(P)-binding domain and a C-terminal dimerization domain.


Pssm-ID: 467616 [Multi-domain]  Cd Length: 157  Bit Score: 37.14  E-value: 4.80e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489866599  51 KVYDDFDAMLTDPMIDVVYIATPHSNHYEF--IMKSLHNGKHVlaekaitVSSAEL------------NEINALAKEKGL 116
Cdd:cd24146   54 KVTDDLDAVLAATKPDVVVHATTSFLADVApqIERLLEAGLNV-------ITTCEElfypwardpelaEELDALAKENGV 126

                 ..
gi 489866599 117 IV 118
Cdd:cd24146  127 TV 128
 
Name Accession Description Interval E-value
MviM COG0673
Predicted dehydrogenase [General function prediction only];
1-249 2.36e-65

Predicted dehydrogenase [General function prediction only];


Pssm-ID: 440437 [Multi-domain]  Cd Length: 295  Bit Score: 207.47  E-value: 2.36e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489866599   1 MKRLNWAILGPGSIAHQFAEGMQGLNR-EIYAVGARSLEKGQVFANQYGIeKVYDDFDAMLTDPMIDVVYIATPHSNHYE 79
Cdd:COG0673    1 MDKLRVGIIGAGGIGRAHAPALAALPGvELVAVADRDPERAEAFAEEYGV-RVYTDYEELLADPDIDAVVIATPNHLHAE 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489866599  80 FIMKSLHNGKHVLAEKAITVSSAELNEINALAKEKGLIVKEAMTIFHMPLYKKLREIVDSGAIGKLKIIQVAFGSAKEKD 159
Cdd:COG0673   80 LAIAALEAGKHVLCEKPLALTLEEARELVAAAEEAGVVLMVGFNRRFDPAVRAARELIDSGAIGEIRSVRARFGHPRPAG 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489866599 160 PKNRFYNMDLA-GGALLDIGTYALSFARYFLSAAPDEVLTTMKKF---ETGVDEQSGILLKNKEEELAVVSLSFRAKVPK 235
Cdd:COG0673  160 PADWRFDPELAgGGALLDLGIHDIDLARWLLGSEPESVSATGGRLvpdRVEVDDTAAATLRFANGAVATLEASWVAPGGE 239
                        250
                 ....*....|....*..
gi 489866599 236 RG---VIACEEGFITVD 249
Cdd:COG0673  240 RDerlEVYGTKGTLFVD 256
GFO_IDH_MocA pfam01408
Oxidoreductase family, NAD-binding Rossmann fold; This family of enzymes utilize NADP or NAD. ...
4-118 6.81e-27

Oxidoreductase family, NAD-binding Rossmann fold; This family of enzymes utilize NADP or NAD. This family is called the GFO/IDH/MOCA family in swiss-prot.


Pssm-ID: 426248 [Multi-domain]  Cd Length: 120  Bit Score: 102.29  E-value: 6.81e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489866599    4 LNWAILGPGSIAHQFAEGMQGLNR--EIYAVGARSLEKGQVFANQYGIEkVYDDFDAMLTDPMIDVVYIATPHSNHYEFI 81
Cdd:pfam01408   1 IRVGIIGAGKIGSKHARALNASQPgaELVAILDPNSERAEAVAESFGVE-VYSDLEELLNDPEIDAVIVATPNGLHYDLA 79
                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 489866599   82 MKSLHNGKHVLAEKAITVSSAELNEINALAKEKGLIV 118
Cdd:pfam01408  80 IAALEAGKHVLCEKPLATTVEEAKELVELAKKKGVRV 116
PRK11579 PRK11579
putative oxidoreductase; Provisional
51-152 9.83e-12

putative oxidoreductase; Provisional


Pssm-ID: 183212 [Multi-domain]  Cd Length: 346  Bit Score: 64.74  E-value: 9.83e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489866599  51 KVYDDFDAMLTDPMIDVVYIATPHSNHYEFIMKSLHNGKHVLAEKAITVSSAELNEINALAKEKGLIvkeaMTIFHMPLY 130
Cdd:PRK11579  51 TVVSEPQHLFNDPNIDLIVIPTPNDTHFPLAKAALEAGKHVVVDKPFTVTLSQARELDALAKSAGRV----LSVFHNRRW 126
                         90       100
                 ....*....|....*....|....*.
gi 489866599 131 KK----LREIVDSGAIGKLKIIQVAF 152
Cdd:PRK11579 127 DSdfltLKALLAEGVLGEVAYFESHF 152
PRK10206 PRK10206
putative oxidoreductase; Provisional
55-152 6.70e-11

putative oxidoreductase; Provisional


Pssm-ID: 182305 [Multi-domain]  Cd Length: 344  Bit Score: 62.53  E-value: 6.70e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489866599  55 DFDAMLTDPMIDVVYIATPHSNHYEFIMKSLHNGKHVLAEKAITVSSAELNEINALAKEKGLIVKEAMTIFHMPLYKKLR 134
Cdd:PRK10206  55 DLDEVLNDPDVKLVVVCTHADSHFEYAKRALEAGKNVLVEKPFTPTLAEAKELFALAKSKGLTVTPYQNRRFDSCFLTAK 134
                         90
                 ....*....|....*...
gi 489866599 135 EIVDSGAIGKLKIIQVAF 152
Cdd:PRK10206 135 KAIESGKLGEIVEVESHF 152
NAD_binding_3 pfam03447
Homoserine dehydrogenase, NAD binding domain; This domain adopts a Rossmann NAD binding fold. ...
10-115 7.32e-07

Homoserine dehydrogenase, NAD binding domain; This domain adopts a Rossmann NAD binding fold. The C-terminal domain of homoserine dehydrogenase contributes a single helix to this structural domain, which is not included in the Pfam model.


Pssm-ID: 281446 [Multi-domain]  Cd Length: 116  Bit Score: 47.30  E-value: 7.32e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489866599   10 GPGSIAHQFAEGMQG----LNREIYAVGARSLEKgQVFANQYGIEKVYDDFDAMLTDPMIDVVYIATPHSNHYEFIMKSL 85
Cdd:pfam03447   1 GCGAIGSGVLEQLLRqqseIPLELVAVADRDLLS-KDPLALLPDEPLTLDLDDLIAHPDPDVVVECASSEAVAELVLDAL 79
                          90       100       110
                  ....*....|....*....|....*....|.
gi 489866599   86 HNGKHVL-AEKAITVSSAELNEINALAKEKG 115
Cdd:pfam03447  80 KAGKDVVtASKGALADLALYEELREAAEANG 110
PRK06349 PRK06349
homoserine dehydrogenase; Provisional
28-121 7.62e-06

homoserine dehydrogenase; Provisional


Pssm-ID: 235783 [Multi-domain]  Cd Length: 426  Bit Score: 46.99  E-value: 7.62e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489866599  28 EIYAVGARSLEKgqvfANQYGI--EKVYDDFDAMLTDPMIDVVY-------IAtphsnhYEFIMKSLHNGKHVL-AEKAi 97
Cdd:PRK06349  38 EIKKVAVRDLEK----DRGVDLpgILLTTDPEELVNDPDIDIVVelmggiePA------RELILKALEAGKHVVtANKA- 106
                         90       100
                 ....*....|....*....|....*
gi 489866599  98 tVSSAELNEINALAKEKGLIVK-EA 121
Cdd:PRK06349 107 -LLAVHGAELFAAAEEKGVDLYfEA 130
F420_oxidored pfam03807
NADP oxidoreductase coenzyme F420-dependent;
7-92 3.18e-03

NADP oxidoreductase coenzyme F420-dependent;


Pssm-ID: 397743 [Multi-domain]  Cd Length: 92  Bit Score: 36.44  E-value: 3.18e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489866599    7 AILGPGSIAHQFAEGMQGLN-REIYAVGARSLEKGQVFANQYGIEKVYDDFDAMLTDPmiDVVYIATPHSNHYEFI--MK 83
Cdd:pfam03807   1 GFIGAGNMGEALARGLVAAGpHEVVVANSRNPEKAEELAEEYGVGATAVDNEEAAEEA--DVVFLAVKPEDAPDVLseLS 78

                  ....*....
gi 489866599   84 SLHNGKHVL 92
Cdd:pfam03807  79 DLLKGKIVI 87
nat-AmDH_N_like cd24146
N-terminal NAD(P)-binding domain of native NAD(P)H-dependent amine dehydrogenases (nat-AmDHs) ...
51-118 4.80e-03

N-terminal NAD(P)-binding domain of native NAD(P)H-dependent amine dehydrogenases (nat-AmDHs) and similar proteins; The family corresponds to a group of native NAD(P)H-dependent amine dehydrogenases (nat-AmDHs) that catalyze the reductive amination of ketone and aldehyde substrates using NAD(P)H as the hydride source. nat-AmDHs can naturally catalyze the amination of 'neutral' carbonyl compounds using ammonia. They possess tremendous potential for the efficient asymmetric synthesis of alpha-chiral amines. The family also contains 2,4-diaminopentanoate dehydrogenase (DAPDH) and similar proteins. DAPDH, also known as ORD, is involved in the ornithine fermentation pathway. It catalyzes the oxidative deamination of (2R,4S)-2,4-diaminopentanoate ((2R,4S)-DAP) to yield 2-amino-4-ketopentanoate (AKP). Although DAPDH is more efficient with (2R,4S)-DAP, the diastereoisomer (2R,4R)-DAP can also be metabolized. Different forms of DAPDH exist which utilize NAD(+) (EC 1.4.1.26) or NAD(+)/NADP(+) (EC 1.4.1.12). Members of this family contain an N-terminal Rossmann fold NAD(P)-binding domain and a C-terminal dimerization domain.


Pssm-ID: 467616 [Multi-domain]  Cd Length: 157  Bit Score: 37.14  E-value: 4.80e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489866599  51 KVYDDFDAMLTDPMIDVVYIATPHSNHYEF--IMKSLHNGKHVlaekaitVSSAEL------------NEINALAKEKGL 116
Cdd:cd24146   54 KVTDDLDAVLAATKPDVVVHATTSFLADVApqIERLLEAGLNV-------ITTCEElfypwardpelaEELDALAKENGV 126

                 ..
gi 489866599 117 IV 118
Cdd:cd24146  127 TV 128
PRK13304 PRK13304
aspartate dehydrogenase;
8-151 6.73e-03

aspartate dehydrogenase;


Pssm-ID: 237343 [Multi-domain]  Cd Length: 265  Bit Score: 37.66  E-value: 6.73e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489866599   8 ILGPGSIAHQFAEGMQG--LNREIYAVGARSLEKGQVFANQYGiEKVYDDFDAMLTDpmIDVVYIATPHSNHYEFIMKSL 85
Cdd:PRK13304   6 IVGCGAIASLITKAILSgrINAELYAFYDRNLEKAENLASKTG-AKACLSIDELVED--VDLVVECASVNAVEEVVPKSL 82
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489866599  86 HNGKHVLAEKAITVSSAEL-NEINALAKEKGLIVkeamtifHMPlykklreivdSGAIGKLKIIQVA 151
Cdd:PRK13304  83 ENGKDVIIMSVGALADKELfLKLYKLAKENNCKI-------YLP----------SGAIVGLDGIKAA 132
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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