|
Name |
Accession |
Description |
Interval |
E-value |
| PBP1_ABC_ligand_binding-like |
cd06340 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
49-399 |
2.52e-112 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, their ligand specificity has not been determined experimentally.
Pssm-ID: 380563 [Multi-domain] Cd Length: 352 Bit Score: 333.76 E-value: 2.52e-112
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 49 IAVVAGLTGRAGPWGIPVNDAVRLAVEQINASGGIKSKGGAQIDLISVDHQSNPQMAGTQTERVIQVNNVLAVIGNVTSG 128
Cdd:cd06340 2 IGVLYPLSGPLALIGQEAKRGAELAVDEINAAGGIKSLGGAKIELVVADTQSDPEVAASEAERLITQEGVVAIIGAYSSS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 129 ATMVGSAVAEKSRTPMVSTD-LGDSLTQRGMKYFFRIGAKASHLAATAVDFSEAMIKATGTKPRKVATMADDSTFSQDAI 207
Cdd:cd06340 82 VTLAASQVAERYGVPFVTASaVADEITERGFKYVFRTAPTASQFAEDAVDFLKELAKKKGKKIKKVAIIYEDSAFGTSVA 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 208 QGAIARIKKTDWDVQENVSFPAGkVSDFLPVLQRLKLSGVDLIFHALFAPDGIQIMRAMKTLNYDLMASVHIAGAPYTPE 287
Cdd:cd06340 162 KGLKKAAKKAGLEVVLDEPYPAG-ATDLSSEVLKLKAAKPDVVFATSYTNDAILLLRTMKELGFKPKAIIGVGGGYSDPE 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 288 YVENLKKDAAFVTDAVGFVPELVANNPLLANYANAYKAKYRRDLDDQASLAVTCVGALYDALERAPDLSREALTeALRAT 367
Cdd:cd06340 241 FLKALGKDAEGVFSVVPWSPDLAKKKPGAKEVNERYKKKYGEDMTGHAARAYTAAWVLADALERAGSTDPEAIR-AAAAL 319
|
330 340 350
....*....|....*....|....*....|..
gi 489904514 368 DLQAGGNPFVLRDGVKFDQAGDNVRAKGLVMQ 399
Cdd:cd06340 320 TLDIPEGLIMPGGGVKFDEKGQNVLARPVVVQ 351
|
|
| PBP1_ABC_ligand_binding-like |
cd06338 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
49-403 |
2.63e-71 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however, their ligand specificity has not been determined experimentally.
Pssm-ID: 380561 [Multi-domain] Cd Length: 347 Bit Score: 228.24 E-value: 2.63e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 49 IAVVAGLTGRAGPWGIPVNDAVRLAVEQINASGGIKSKG-GAQIDLISVDHQSNPQMAGTQTERVIQVNNVLAVIGNVTS 127
Cdd:cd06338 2 IGASLSLTGPFAGEGKAQKRGYELWVEDVNAAGGVKGGGkKRPVELVYYDDQSDPATAVRLYEKLITEDKVDLLLGPYSS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 128 GATMVGSAVAEKSRTPMV-STDLGDSLTQRGMKYFFRIGAKASHLAATAVDfseaMIKATGTKPRKVATMADDSTFSQDA 206
Cdd:cd06338 82 GLTLAAAPVAEKYGIPMIaGGAASDSIFERGYKYVFGVLPPASDYAKGLLD----LLAELGPKPKTVAIVYEDDPFGKEV 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 207 IQGAIARIKKTDWDVQENVSFPAGkVSDFLPVLQRLKLSGVDLIFHALFAPDGIQIMRAMKTLNYDLMAsVHIAGAPYTP 286
Cdd:cd06338 158 AEGAREAAKKAGLEVVYDESYPPG-TTDFSPLLTKVKAANPDILLVGGYPPDAITLVRQMKELGYNPKA-FFLTVGPAFP 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 287 EYVENLKKDAAFVTDAVGFVPEL-VANNPLLANYANAYKAKYRRDLDDQASLAVTCVGALYDALERAPDLSREALTEALR 365
Cdd:cd06338 236 AFREALGKDAEGVLGPSQWEPSLpYKVFPGAKEFVKAYKEKFGEEPSYHAAAAYAAGQVLQQAIEKAGSLDPEKVRDALA 315
|
330 340 350
....*....|....*....|....*....|....*...
gi 489904514 366 ATDLQAGGNPFvlrdgvKFDQAGDNVRAKGLVMQLLDG 403
Cdd:cd06338 316 SLDFDTVYGPI------KFDETGLQIGKPMVVVQWQGG 347
|
|
| LivK |
COG0683 |
ABC-type branched-chain amino acid transport system, periplasmic component [Amino acid ... |
47-410 |
5.26e-53 |
|
ABC-type branched-chain amino acid transport system, periplasmic component [Amino acid transport and metabolism];
Pssm-ID: 440447 [Multi-domain] Cd Length: 314 Bit Score: 179.74 E-value: 5.26e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 47 IPIAVVAGLTGRAGPWGIPVNDAVRLAVEQINASGGIkskGGAQIDLISVDHQSNPQMAGTQTERVIQVNNVLAVIGNVT 126
Cdd:COG0683 4 IKIGVLLPLTGPYAALGQPIKNGAELAVEEINAAGGV---LGRKIELVVEDDASDPDTAVAAARKLIDQDKVDAIVGPLS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 127 SGATMVGSAVAEKSRTPMVSTDLG-DSLTQR-GMKYFFRIGAKASHLAATAVDFseaMIKATGTKprKVATMADDSTFSQ 204
Cdd:COG0683 81 SGVALAVAPVAEEAGVPLISPSATaPALTGPeCSPYVFRTAPSDAQQAEALADY---LAKKLGAK--KVALLYDDYAYGQ 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 205 DAIQGAIARIKKTDWDVQENVSFPAGKvSDFLPVLQRLKLSGVDLIFHALFAPDGIQIMRAMKTLNYDLmasvhiagapy 284
Cdd:COG0683 156 GLAAAFKAALKAAGGEVVGEEYYPPGT-TDFSAQLTKIKAAGPDAVFLAGYGGDAALFIKQAREAGLKG----------- 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 285 tpeyvenlkkdaafvtdavgfvpelvannPLLANYANAYKAKYRRDLDDQASLAVTCVGALYDALERAPDLSREALTEAL 364
Cdd:COG0683 224 -----------------------------PLNKAFVKAYKAKYGREPSSYAAAGYDAALLLAEAIEKAGSTDREAVRDAL 274
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 489904514 365 RATDLQAGGNPFvlrdgvKFDQAGDNVRAkGLVMQL-LDGQQRIVYP 410
Cdd:COG0683 275 EGLKFDGVTGPI------TFDPDGQGVQP-VYIVQVkADGKFVVVET 314
|
|
| PBP1_ABC_LIVBP-like |
cd06342 |
type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active ... |
49-393 |
2.97e-48 |
|
type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine); This subgroup includes the type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Pssm-ID: 380565 [Multi-domain] Cd Length: 334 Bit Score: 167.70 E-value: 2.97e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 49 IAVVAGLTGRAGPWGIPVNDAVRLAVEQINASGGIKskgGAQIDLISVDHQSNPQMAGTQTERVIQvNNVLAVIGNVTSG 128
Cdd:cd06342 2 IGVAGPLTGPNAALGQDIRNGAELAVDEINAKGGGL---GFKIELVAQDDACDPAQAVAAAQKLVA-DGVVAVIGHYNSG 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 129 ATMVGSAVAEKSRTPMVS---TdlGDSLTQRGMKYFFRIGAKASHLAATAVDFseamIKATGtKPRKVATMADDSTFSQD 205
Cdd:cd06342 78 AAIAAAPIYAEAGIPMISpsaT--NPKLTEQGYKNFFRVVGTDDQQGPAAADY----AAKTL-KAKRVAVIHDGTAYGKG 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 206 AIQGAIARIKKTDWDVQENVSFPAGKvSDFLPVLQRLKLSGVDLIFHALFAPDGIQIMRAMKTLNYD--LMASvhiaGAP 283
Cdd:cd06342 151 LADAFKKALKALGGTVVGREGITPGT-TDFSALLTKIKAANPDAVYFGGYYPEAGLLLRQLREAGLKapFMGG----DGI 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 284 YTPEYVENLKKDA--AFVTdavgFVPELVANNPLLANYANAYKAKYRRDLDDQASLAVTCVGALYDALERAPDLSREALT 361
Cdd:cd06342 226 VSPDFIKAAGDAAegVYAT----TPGAPPEKLPAAKAFLKAYKAKFGEPPGAYAAYAYDAAQVLLAAIEKAGSTDRAAVA 301
|
330 340 350
....*....|....*....|....*....|..
gi 489904514 362 EALRATDLQAggnpfVLRDgVKFDQAGDNVRA 393
Cdd:cd06342 302 AALRATDFDG-----VTGT-ISFDAKGDLTGP 327
|
|
| Peripla_BP_6 |
pfam13458 |
Periplasmic binding protein; This family includes a diverse range of periplasmic binding ... |
47-380 |
6.08e-48 |
|
Periplasmic binding protein; This family includes a diverse range of periplasmic binding proteins.
Pssm-ID: 433225 [Multi-domain] Cd Length: 342 Bit Score: 167.07 E-value: 6.08e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 47 IPIAVVAGLTGRAGPWGIPVNDAVRLAVEQINASGGIkskGGAQIDLISVDHQSNPQMAGTQTERVIQVNNVLAVIGNVT 126
Cdd:pfam13458 2 IKIGVLTPLSGPYASSGKSSRAGARAAIEEINAAGGV---NGRKIELVVADDQGDPDVAAAAARRLVDQDGVDAIVGGVS 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 127 SGATMVGSAVAEKSRTPMVSTdlGDSLTQRGMKYFFRIGAKASHLAATAVDFseaMIKATGtkPRKVATMADDSTFSQDA 206
Cdd:pfam13458 79 SAVALAVAEVLAKKGVPVIGP--AALTGEKCSPYVFSLGPTYSAQATALGRY---LAKELG--GKKVALIGADYAFGRAL 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 207 IQGAIARIKKTDWDVQENVSFPAGkVSDFLPVLQRLKLSGVDLIFHALFAPDGIQIMRAMKTLNYDLmASVHIAGAPYTP 286
Cdd:pfam13458 152 AAAAKAAAKAAGGEVVGEVRYPLG-TTDFSSQVLQIKASGADAVLLANAGADTVNLLKQAREAGLDA-KGIKLVGLGGDE 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 287 EYVENLKKDAAF-VTDAVGFVPELvaNNPLLANYANAYKAKYRRDLDDQASLAVTCVGALY-DALERAPDLSREALTEAL 364
Cdd:pfam13458 230 PDLKALGGDAAEgVYATVPFFPDL--DNPATRAFVAAFAAKYGEAPPTQFAAGGYIAADLLlAALEAAGSPTREAVIAAL 307
|
330
....*....|....*.
gi 489904514 365 RATDLQAGGNPFVLRD 380
Cdd:pfam13458 308 RALPYDGPFGPVGFRA 323
|
|
| PBP1_ABC_ligand_binding-like |
cd19982 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
48-327 |
3.66e-44 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, their ligand specificity has not been determined experimentally.
Pssm-ID: 380637 [Multi-domain] Cd Length: 302 Bit Score: 155.90 E-value: 3.66e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 48 PIAVVAGLTGRAGPWGIPVNDAVRLAVEQINASGGIKskgGAQIDLISVDHQSNPQMAGTQTERVIQVNNVLAVIGNVTS 127
Cdd:cd19982 1 KIGAILSLTGPFAPFGEMFKNGYEMALEEINAAGGIK---GKKLELVIEDDQSKPQTALAAAEKLVSQDKVPLIVGGYSS 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 128 GATMVGSAVAEKSRTPM-VSTDLGDSLTQRGMKYFFRIGAKASHLAATAVDFseamIKATGtKPRKVATMADDSTFSQDA 206
Cdd:cd19982 78 GITLPVAAVAERQKIPLlVPTAADDDITKPGYKYVFRLNPPASIYAKALFDF----FKELV-KPKTIAILYENTAFGTSV 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 207 IQGAIARIKKTDWDVQENVSFPAGKVsDFLPVLQRLKLSGVDLIFHALFAPDGIQIMRAMKTLNYDLMASVHIAGAPYTP 286
Cdd:cd19982 153 AKAARRFAKKRGIEVVADESYDKGAT-DFKPLLNKVKAANPDVVYMVSYLNDAILLMRQAKELGLNPKLFAGGGAGFTIP 231
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 489904514 287 EYVENLKKDAAFVTDAVGFVPELvaNNPLLANYANAYKAKY 327
Cdd:cd19982 232 EFLKQAGPLAEYVVTATLWSPDV--KYPGAKEFYEKYKAKY 270
|
|
| PBP1_ABC_ligand_binding-like |
cd19980 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
49-391 |
1.16e-43 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380635 [Multi-domain] Cd Length: 334 Bit Score: 155.46 E-value: 1.16e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 49 IAVVAGLTGRAGPWGIPVNDAVRLAVEQINASGGIkskGGAQIDLISVDHQSNPQMAGTQTERVIQVNNVLAVIGNVTSG 128
Cdd:cd19980 2 IGVIAPLSGPVAALGQQVLNGAKLAVEEINAKGGV---LGRKLELVVEDDKCPPAEGVAAAKKLITDDKVPAIIGAWCSS 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 129 ATMVGSAVAEKSRTPM-VSTDLGDSLTQRGMKYFFRIGAKASHLAATAVDFseamIKATGtKPRKVATMADDSTFSQDAI 207
Cdd:cd19980 79 VTLAVMPVAERAKVPLvVEISSAPKITEGGNPYVFRLNPTNSMLAKAFAKY----LADKG-KPKKVAFLAENDDYGRGAA 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 208 QGAIARIKKTDWDVQENVSFPAGKvSDFLPVLQRLKLSGVDLIFHALFAPDGIQIMRAMKTLNYDLMasvHIAGAPYTPE 287
Cdd:cd19980 154 EAFKKALKAKGVKVVATEYFDQGQ-TDFTTQLTKLKAANPDAIFVVAETEDGALILKQARELGLKQQ---LVGTGGTTSP 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 288 YVENLKKDAA-FVTDAVGFVPElvANNPLLANYANAYKAKYRRDLDDQASLAVTCVGALYDALERAPDLSREAL-TEALR 365
Cdd:cd19980 230 DLIKLAGDAAeGVYGASIYAPT--ADNPANKAFVAAYKKKYGEPPDKFAALGYDAVMVIAEAIKKAGSTDPEKIrAAALK 307
|
330 340
....*....|....*....|....*....
gi 489904514 366 ATDLQAggnpfvLRDGVKFD---QAGDNV 391
Cdd:cd19980 308 KVDYKG------PGGTIKFDekgQAHKNV 330
|
|
| PBP1_ABC_transporter_LIVBP-like |
cd06268 |
periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the ... |
49-348 |
1.33e-43 |
|
periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily; Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type 1 periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC-type Leucine-Isoleucine-Valine-Binding Proteins (LIVBP), which are homologous to the aliphatic amidase transcriptional repressor, AmiC, of Pseudomonas aeruginosa. The uncharacterized periplasmic components of various ABC-type transport systems are included in this group.
Pssm-ID: 380492 [Multi-domain] Cd Length: 298 Bit Score: 154.41 E-value: 1.33e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 49 IAVVAGLTGRAGPWGIPVNDAVRLAVEQINASGGIkskGGAQIDLISVDHQSNPQMAGTQTERVIQVNNVLAVIGNVTSG 128
Cdd:cd06268 2 IGVVVPLTGPYADYGEEILRGVALAVEEINAAGGI---NGRKLELVIADDQGDPETAVAVARKLVDDDKVLAVVGHYSSS 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 129 ATMVGSAVAEKSRTPMVSTD-LGDSLTQRGMKYFFRIGAKASHLAATAVDFseamIKATGtKPRKVATMADDSTFSQDAI 207
Cdd:cd06268 79 VTLAAAPIYQEAGIPLISPGsTAPELTEGGGPYVFRTVPSDAMQAAALADY----LAKKL-KGKKVAILYDDYDYGKSLA 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 208 QGAIARIKKTDWDVQENVSFPAGKvSDFLPVLQRLKLSGVDLIFHALFAPDGIQIMRAMKTLNYDLmasvHIAGAP--YT 285
Cdd:cd06268 154 DAFKKALKALGGEIVAEEDFPLGT-TDFSAQLTKIKAAGPDVLFLAGYGADAANALKQARELGLKL----PILGGDglYS 228
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489904514 286 PEYVENLKKDAAFVTDAVGFVPElvANNPLLANYANAYKAKYRRDLDDQASLAvtcvgalYDA 348
Cdd:cd06268 229 PELLKLGGEAAEGVVVAVPWHPD--SPDPPKQAFVKAYKKKYGGPPSWRAATA-------YDA 282
|
|
| PBP1_ABC_LivK_ligand_binding-like |
cd06347 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
49-367 |
4.87e-42 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380570 [Multi-domain] Cd Length: 334 Bit Score: 151.16 E-value: 4.87e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 49 IAVVAGLTGRAGPWGIPVNDAVRLAVEQINASGGIKSKggaQIDLISVDHQSNPQMAGTQTERVIQVNNVLAVIGNVTSG 128
Cdd:cd06347 2 IGVIGPLTGEAAAYGQPALNGAELAVDEINAAGGILGK---KIELIVYDNKSDPTEAANAAQKLIDEDKVVAIIGPVTSS 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 129 ATMVGSAVAEKSRTPMVSTDLGDSLTQRGMKYFFRIGAKASHLAATAVDFSeamIKATGTKprKVATMAD-DSTFSQDAI 207
Cdd:cd06347 79 IALAAAPIAQKAKIPMITPSATNPLVTKGGDYIFRACFTDPFQGAALAKFA---YEELGAK--KAAVLYDvSSDYSKGLA 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 208 QGAIARIKKTDWDVQENVSFPAGkVSDFLPVLQRLKLSGVDLIFHALFAPDGIQIMRAMKTLNYDlmasVHIAGA----- 282
Cdd:cd06347 154 KAFKEAFEKLGGEIVAEETYTSG-DTDFSAQLTKIKAANPDVIFLPGYYEEAALIIKQARELGIT----APILGGdgwds 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 283 PYTPEYVENLKKDAAFVTdavGFVPElvANNPLLANYANAYKAKYRRDLDDQASLAVTCVGALYDALERAPDLSREALTE 362
Cdd:cd06347 229 PELLELGGDAVEGVYFTT---HFSPD--DPSPEVQEFVKAYKAKYGEPPNAFAALGYDAVMLLADAIKRAGSTDPEAIRD 303
|
....*
gi 489904514 363 ALRAT 367
Cdd:cd06347 304 ALAKT 308
|
|
| PBP1_ABC_HAAT-like |
cd06349 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
49-404 |
1.13e-41 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380572 [Multi-domain] Cd Length: 338 Bit Score: 150.41 E-value: 1.13e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 49 IAVVAGLTGRAGPWGIPVNDAVRLAVEQINASGGIKskgGAQIDLISVDHQSNPQMAGTQTERVIQVNNVLAVIGNVTSG 128
Cdd:cd06349 2 IGVSGPLTGDNAEYGQQFKNGVELAVDEINAAGGVN---GRKLELVVYDDQGDPKEAVNIAQKFVSDDKVVAVIGDFSSS 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 129 ATMVGSAVAEKSRTPMVSTDLGDSLTQRGMKYFFRIGAKASHLAATAVDFseaMIKATGTKprKVATMADDSTFSQDAIQ 208
Cdd:cd06349 79 CSMAAAPIYEEAGLVQISPTASHPDFTKGGDYVFRNSPTQAVEAPFLADY---AVKKLGAK--KIAIIYLNTDWGVSAAD 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 209 GAIARIKKTDWDVQENVSFPAGKvSDFLPVLQRLKLSGVDLIFHALFAPDGIQIMRAMKTLNYDlmasVHIAG--APYTP 286
Cdd:cd06349 154 AFKKAAKALGGEIVATEAYLPGT-KDFSAQITKIKNANPDAIYLAAYYNDAALIAKQARQLGWD----VQIFGssSLYSP 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 287 EYVEnLKKDAA--FVTdAVGFVPElvANNPLLANYANAYKAKYRRDLDDQASLAVTCVGALYDALERAPDlSREALTEAL 364
Cdd:cd06349 229 EFIE-LAGDAAegVYL-SSPFFPE--SPDPEVKEFVKAYKAKYGEDPDDFAARAYDAVNILAEAIEKAGT-DREAIRDAL 303
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 489904514 365 RATDLQAG-GNPFvlrdgvKFDQAGDNVRAKgLVMQLLDGQ 404
Cdd:cd06349 304 ANIKDFSGlTGTI------TFDENGDVLKSL-TILVVKDGK 337
|
|
| PBP1_ABC_ligand_binding-like |
cd06345 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
49-369 |
1.94e-40 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380568 [Multi-domain] Cd Length: 356 Bit Score: 147.41 E-value: 1.94e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 49 IAVVAGLTGRAGpWGIPvnDAVRLAVEQINASGGIKskgGAQIDLISVDHQSNPQMAGTQTERVIQVNNVLAVIGNVTSG 128
Cdd:cd06345 2 IGVLGPLSAPAG-EAME--RGAELAVEEINAAGGIL---GRKVELVVADTQGKPEDGVAAAERLITEDKVDAIVGGFRSE 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 129 ATMVGSAVAEKSRTPMVSTD-LGDSLTQRGM------KYFFRIGAKASHLAATAVDFSEAMIKAtGTKPRKVATMADDST 201
Cdd:cd06345 76 VVLAAMEVAAEYKVPFIVTGaASPAITKKVKkdyekyKYVFRVGPNNSYLGATVAEFLKDLLVE-KLGFKKVAILAEDAA 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 202 FSQDAIQGAIARIKKTDWDVQENVSFPAGKvSDFLPVLQRLKLSGVDLIFHALFAPDGIQIMRAMKTLNYDLMASVHIAG 281
Cdd:cd06345 155 WGRGIAEALKKLLPEAGLEVVGVERFPTGT-TDFTPILSKIKASGADVIVTIFSGPGGILLVKQWAELGVPAPLVGINVP 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 282 APYtPEYVENLKKDAAFVTDAVGFVPElVANNPLLANYANAYKAKYRRDLDDQASLAVTCVGALYDALERAPDLSREALT 361
Cdd:cd06345 234 AQD-PEFWENTGGAGEYEITLAFAAPK-AKVTPKTKPFVDAYKKKYGEAPNYTAYTAYDAIYILAEAIERAGSTDPDALV 311
|
....*...
gi 489904514 362 EALRATDL 369
Cdd:cd06345 312 KALEKTDY 319
|
|
| PBP1_ABC_RPA1789-like |
cd06333 |
type 1 periplasmic binding-protein component (CouP) of an ABC system (CouPSTU; RPA1789, ... |
49-374 |
3.30e-38 |
|
type 1 periplasmic binding-protein component (CouP) of an ABC system (CouPSTU; RPA1789, RPA1791-1793), involved in active transport of lignin-derived aromatic substrates, and its close homologs; This group includes RPA1789 (CouP) from Rhodopseudomonas palustris and its close homologs in other bacteria. RPA1789 (CouP) is the periplasmic binding-protein component of an ABC system (CouPSTU; RPA1789, RPA1791-1793) that is involved in the active transport of lignin-derived aromatic substrates. Members of this group has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP).
Pssm-ID: 380556 [Multi-domain] Cd Length: 342 Bit Score: 141.15 E-value: 3.30e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 49 IAVVAGLTGRAGPWGIPVNDAVRLAVEQINASGGIkskGGAQIDLISVDHQSNPQMAGTQTERVIQVNNVLAVIGNVTSG 128
Cdd:cd06333 2 IGAILSLTGPAASLGIPERNAVELLVEQINAAGGI---NGRKLELIVYDDESDPTKAVTNARKLIEEDKVDAIIGPSTTG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 129 ATMVGSAVAEKSRTPMVSTDLGDSLTQRGMKYFFRIGAKASHLAATAVDFseamIKATGTKprKVATMADDSTFSQDAIQ 208
Cdd:cd06333 79 ESLAVAPIAEEAKVPLISLAGAAAIVEPVRKWVFKTPQSDSLVAEAILDY----MKKKGIK--KVALLGDSDAYGQSGRA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 209 GAIARIKKTDWDVQENVSFPAGkVSDFLPVLQRLKLSGVDLIFHALFAPDGIQIMRAMKTLNYDlMASVHIAGAPyTPEY 288
Cdd:cd06333 153 ALKKLAPEYGIEIVADERFART-DTDMTAQLTKIRAAKPDAVLVWASGPPAALVAKNLRQLGYK-GPIYQSHGAA-NQDF 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 289 VENLKKDAA---FVTDAVGFVPELVANNP---LLANYANAYKAKYRRDLDDQASLAVTCVGALYDALERAPDLSREALTE 362
Cdd:cd06333 230 IKLAGKAAEgviLPAGKLLVADQLPDSDPqkkVLLEFVKAYEAKYGEGPSTFAGHAYDALLLLVEAIEPAGGTDRAALRD 309
|
330
....*....|..
gi 489904514 363 ALRATDLQAGGN 374
Cdd:cd06333 310 ALENTKGLVGVT 321
|
|
| PBP1_As_SBP-like |
cd06330 |
periplasmic substrate-binding domain of active transport proteins; Periplasmic ... |
49-365 |
2.48e-37 |
|
periplasmic substrate-binding domain of active transport proteins; Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic (As) and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Pssm-ID: 380553 [Multi-domain] Cd Length: 342 Bit Score: 138.85 E-value: 2.48e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 49 IAVVAGLTGRAGPWGIPVNDAVRLAVEQINASGGIkskGGAQIDLISVDHQSNPQMAGTQTERVIQVNNVLAVIGNVTSG 128
Cdd:cd06330 2 IGVITPLSGAAAVYGEPARNGAELAVEEINAAGGI---LGRKIELVVRDDKGKPDEAVRAARELVLQEGVDFLIGTISSG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 129 ATMVGSAVAEKSRTPMVSTD-LGDSLT-QRGMKYFFRIGAKASHLAATAVdfseAMIKATGTKPRKVATMADDSTFSQDA 206
Cdd:cd06330 79 VALAVAPVAEELKVLFIATDaATDRLTeENFNPYVFRTSPNTYMDAVAAA----LYAAKKPPDVKRWAGIGPDYEYGRDS 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 207 IQGAIARIKKTDWDVQE-NVSFPAGKVSDFLPVLQRLKLSGVDLIFHALFAPDGIQIMRAMKTlnYDLMASVHIAGAP-Y 284
Cdd:cd06330 155 WAAFKAALKKLKPDVEVvGELWPKLGATDYTAYITALLAAKPDGVFSSLWGGDLVTFVKQAKP--YGLFDKTKVVSGLgG 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 285 TPEYVENLKKDAAFVTDAVGFVPELVANNPLLANYANAYKAKYRRDLDDQASLAVTCVGALYDALERAPDLSREALTEAL 364
Cdd:cd06330 233 GSEVLQALGKEMPEGLIGGGRYPFGWPDTPLNKAFVEAYRAKYGEYPTYWAYEAYAAVMALKAAIEKAGSTDTDKVIAAL 312
|
.
gi 489904514 365 R 365
Cdd:cd06330 313 E 313
|
|
| PBP1_AmiC-like |
cd06331 |
type 1 periplasmic components of amide-binding protein (AmiC) and the active transport system ... |
49-375 |
3.94e-34 |
|
type 1 periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF); This group includes the type 1 periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Pssm-ID: 380554 [Multi-domain] Cd Length: 333 Bit Score: 130.03 E-value: 3.94e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 49 IAVVAGLTGRAGPWGIPVNDAVRLAVEQINASGGIkskGGAQIDLISVDHQSNPQMAGTQTERVIQVNNVLAVIGNVTSG 128
Cdd:cd06331 2 IGLLTPLSGPASVYGRAIANGAELAVEEINAAGGV---LGRPVELVVEDDASDPATAVAAARRLIQQDKVDAIVGPITSA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 129 ATMVGSAVAEKSRTPMVSTDLGDSLTQRgmKYFFRIGAKASHLAATAVDFseaMIKATGtkpRKVATMADDSTFSQDAIQ 208
Cdd:cd06331 79 TRNAVAPVAERAKVPLLYPTFYEGGECS--PYLFCFGEVPNQQLDPLIPW---LMEEYG---KKFYLIGSDYVWPRTMND 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 209 GAIARIKKTDWDVQENVSFPAGkVSDFLPVLQRLKLSGVDLIFHALFAPDGIQIMRAMKtlNYDLMASVHIAGAPYTPEY 288
Cdd:cd06331 151 AARRVIEAHGGEVVGEEYLPLG-TTDFSSVIEKIKASGADVVLSTLVGADAVTFLKQFA--AAGLRRKVRIAALLFDENT 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 289 VENLKKDAA--FVTdAVGFVPELvaNNPLLANYANAYKAKYRRDLDDQASLAVT---CVGALYDALERAPDLSREALTEA 363
Cdd:cd06331 228 LAGLGAEAAegIYS-VLSYFQSL--DTPENKAFVAAYRKKFGEDAPPITSLSEAayeAVHLYAAAVEKAGSTDPEAVIAA 304
|
330
....*....|..
gi 489904514 364 LRATDLQAGGNP 375
Cdd:cd06331 305 LPGVSFDGPQGP 316
|
|
| PBP1_ABC_HAAT-like |
cd19988 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
49-348 |
1.61e-33 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380643 [Multi-domain] Cd Length: 302 Bit Score: 127.39 E-value: 1.61e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 49 IAVVAGLTGRAGPWGIPVNDAVRLAVEQINASGGIKskgGAQIDLISVDHQSNPQMAGTQTERVIQVNNVLAVIGNVTSG 128
Cdd:cd19988 2 IGVFGPLSGDAAPYGQAMLQGAELAVEEINAAGGIL---GIPIELVVEDDEGLPAASVSAAKKLIYQDKVWAIIGSINSS 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 129 ATMVGSAVAEKSRTPMVST-DLGDSLTQRGMKYFFRIGAKASHLAATAVDFSEAMIKATgtkprKVATMADDSTFSQDAI 207
Cdd:cd19988 79 CTLAAIRVALKAGVPQINPgSSAPTITESGNPWVFRCTPDDRQQAYALVDYAFEKLKVT-----KIAVLYVNDDYGRGGI 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 208 QGAIARIKKTDWDVQENVSFPAGKVsDFLPVLQRLKLSGVDLIFHALFAPDGIQIMRAMKTLNydlMASVHIAGAPY-TP 286
Cdd:cd19988 154 DAFKDAAKKYGIEVVVEESYNRGDK-DFSPQLEKIKDSGAQAIVMWGQYTEGALIAKQARELG---LKQPLFGSDGLvTP 229
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489904514 287 EYVENLKKDAAFVTDAVGFVPELvaNNPLLANYANAYKAKYRRDLDDQASLAvtcvgalYDA 348
Cdd:cd19988 230 KFIELAGDAAEGAIATTPFLPDS--DDPKVSAFVEKYKKRYGEEPDVFAAQA-------YDA 282
|
|
| PBP1_ABC_HAAT-like |
cd19986 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
49-349 |
5.24e-32 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380641 [Multi-domain] Cd Length: 297 Bit Score: 123.12 E-value: 5.24e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 49 IAVVAGLTGRAGPWGIPVNDAVRLAVEQINASGGIKskgGAQIDLISVDHQSNPQMAGTQTERVIQVNNVLAVIGNVTSG 128
Cdd:cd19986 2 IGVVAPLTGPAALNGEYQKNGAQLALEEINAAGGVL---GRPLELVVEDDQGTNTGAVNAVNKLISDDKVVAVIGPHYST 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 129 ATMVGSAVAEKSRTPMVSTDLGDSLTQRGMKYFFRIGAKASHLAATAVDFSEAMIKATgtkprKVATMADDSTFSQDAIQ 208
Cdd:cd19986 79 QVLAVSPLVKEAKIPVITGGTSPKLTEQGNPYMFRIRPSDSVSAKALAKYAVEELGAK-----KIAILYDNDDFGTGGAD 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 209 GAIARIKKTDWDVQENVSFPAGKvSDFLPVLQRLKLSGVDLIFHALFAPDGIQIMRAMKTL--NYDLMASVHIAGAPY-- 284
Cdd:cd19986 154 VVTAALKALGLEPVAVESYNTGD-KDFTAQLLKLKNSGADVIIAWGHDAEAALIARQIRQLglDVPVIGSSSFATPTVll 232
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489904514 285 -TPEYVENLKKDAAFVTDavgfvpelvANNPLLANYANAYKAKYRRDLDDQASlavtcvgALYDAL 349
Cdd:cd19986 233 lAGEALEGIYSVTDFVPS---------DPDPKVQAFVKKYKAKYGEDPDLYSA-------WYYDAM 282
|
|
| PBP1_ABC_ligand_binding-like |
cd06335 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
48-364 |
4.82e-31 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Pssm-ID: 380558 [Multi-domain] Cd Length: 348 Bit Score: 121.95 E-value: 4.82e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 48 PIAVVAGLTGRAGPWGIPVNDAVRLAVEQINASGGIkskGGAQIDLISVDHQSNPQMAGTQTERVIQVNNVLAVIGNVTS 127
Cdd:cd06335 1 KIGVIGPLTGPSAELGESARRGVELAVEEINAAGGI---LGRKIELVERDDEANPTKAVQNAQELIDKEKVVAIIGPTNS 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 128 GATMVGSAVAEKSRTPM---VSTdlGDSLTQRGMK---YFFRIgakashlAATAVDFSEAMIK-ATGTKPRKVATMADDS 200
Cdd:cd06335 78 GVALATIPILQEAKIPLiipVAT--GTAITKPPAKprnYIFRV-------AASDTLQADFLVDyAVKKGFKKIAILHDTT 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 201 ---TFSQDAIQGAIARIKKTDWDVQenvSFPAGKVsDFLPVLQRLKLSGVD-LIFHALfAPDGIQIMRAMKTLNYDlmas 276
Cdd:cd06335 149 gygQGGLKDVEAALKKRGITPVATE---SFKIGDT-DMTPQLLKAKDAGADvILVYGL-GPDLAQILKAMEKLGWK---- 219
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 277 VHIAGAP--YTPEYVENLKKDA--AFVTDAVGFVPelvaNNPLLANYANAYKAKYRRDLDDQASLAVT---CVGALYDAL 349
Cdd:cd06335 220 VPLVGSWglSMPNFIELAGPLAegTIMTQTFIEDY----LTPRAKKFIDAYKKKYGTDRIPSPVSAAQgydAVYLLAAAI 295
|
330
....*....|....*
gi 489904514 350 ERAPDLSREALTEAL 364
Cdd:cd06335 296 KQAGSTDGKKIRAAL 310
|
|
| PBP1_ABC_ligand_binding-like |
cd06343 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
47-368 |
4.48e-30 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Pssm-ID: 380566 [Multi-domain] Cd Length: 355 Bit Score: 119.21 E-value: 4.48e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 47 IPIAVVAGLTGRAGPWGIPVNDAVRLAVEQINASGGIKskgGAQIDLISVDHQSNPQMAGTQTERVIQVNNVLAVIGNVT 126
Cdd:cd06343 7 IKIGTSLPLSGPAAAYGKPVRAGAAAYFDEVNAAGGIN---GRKIELIVEDDGYDPARAVAAVRKLVEQDKVFAIVGGLG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 127 SGATMVGSAVAEKSRTPMVSTDLGDS-LTQRGMKYFFRIGAKASHLAATAVDFseamIKATGtKPRKVATMADDSTFSQD 205
Cdd:cd06343 84 TPTNLAVRPYLNEAGVPQLFPATGASaLSPPPKPYTFGVQPSYEDEGRILADY----IVETL-PAAKVAVLYQNDDFGKD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 206 AIQGAIARIKKTDWDVQENVSFPAGkVSDFLPVLQRLKLSGVDLIFHALFAPDGIQIMRAMKTLNYDLMASVhiAGAPYT 285
Cdd:cd06343 159 GLEGLKEALKAYGLEVVAEETYEPG-DTDFSSQVLKLKAAGADVVVLGTLPKEAAAALKEAAKLGWKPTFLG--SSVSAD 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 286 PEYVENLKKDAAFVTDAVGFVPELV-ANNPLLANYANAYKAKYRRDLDDQASLAvTCVGA--LYDALERA-PDLSREALT 361
Cdd:cd06343 236 PTTLAKAGGDAAEGVYSASYLKDPTdADDPAVKEFREAYKKYFPDDPPNAYALY-GYAAAqvFVEALKRAgKDLTREGLI 314
|
....*..
gi 489904514 362 EALRATD 368
Cdd:cd06343 315 KALESLK 321
|
|
| PBP1_ABC_ligand_binding-like |
cd19984 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
49-349 |
2.33e-28 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380639 [Multi-domain] Cd Length: 296 Bit Score: 113.08 E-value: 2.33e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 49 IAVVAGLTGRAGPWGIPVNDAVRLAVEQINASGGIKSKggaQIDLISVDHQSNPQMAGTQTERVIQVNNVLAVIGNVTSG 128
Cdd:cd19984 2 IGVILPLTGDAASYGEDMKNGIELAVEEINAAGGINGK---KIELIYEDSKCDPKKAVSAANKLINVDKVKAIIGGVCSS 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 129 ATMVGSAVAEKSRTPMVST-DLGDSLTQRGmKYFFRIGAKASHLAATAVDFseamikATGTKPRKVATMADDSTFSQDAI 207
Cdd:cd19984 79 ETLAIAPIAEQNKVVLISPgASSPEITKAG-DYIFRNYPSDAYQGKVLAEF------AYNKLYKKVAILYENNDYGVGLK 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 208 QGAIARIKKTDWDVQENVSFPAGKVsDFLPVLQRLKLSGVDLIFHALFAPDGIQIMRAMKTLNYDlmASVHIAGAPYTPE 287
Cdd:cd19984 152 DVFKKEFEELGGKIVASESFEQGET-DFRTQLTKIKAANPDAIFLPGYPKEGGLILKQAKELGIK--APILGSDGFEDPE 228
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489904514 288 YVENLKKDAAFVTDAVGFVPElvANNPLLANYANAYKAKYRRDLDDQASLAvtcvgalYDAL 349
Cdd:cd19984 229 LLEIAGEAAEGVIFTYPAFDD--SSEKKQKFFFYRYKEKYGKEPDIYAALA-------YDAV 281
|
|
| PBP1_ABC_ligand_binding-like |
cd06336 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
49-368 |
1.10e-27 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This group includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, their ligand specificity has not been determined experimentally.
Pssm-ID: 380559 [Multi-domain] Cd Length: 345 Bit Score: 112.33 E-value: 1.10e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 49 IAVVAGLTGRAGPWGIPVNDAVRLAVEQINASGGIKSKGGA-QIDLISVDHQSNPQMAGTQTERVIQVNNVLAVIGNVTS 127
Cdd:cd06336 2 IGFLGPLSGPAAAWGLPMLRGLELAADEINAAGGIKVGGKKyKVEVVSYDDKYTPAEAVAAARRLVSQDGVKFIFGPGGS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 128 GATMVGSAVAEKSRTPMVSTDLGDSLTQRGMKYFFRIGakashlaATAVDFSEAMIK-ATGTKP-RKVATMADDSTFSQD 205
Cdd:cd06336 82 AIAAAVQPVTERNKVLLLTAAFSDPILGPDNPLLFRIP-------PTPYEYAPPFIKwLKKNGPiKTVALIAPNDATGKD 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 206 AIQGAIARIKKTDWDVQENVSFPAGkVSDFLPVLQRLKLSGVDLIFHALFAP-DGIQIMRAMKTLNYDlmASVHIAGAPY 284
Cdd:cd06336 155 WAAAFVAAWKAAGGEVVAEEFYDRG-TTDFYPVLTKILALKPDALDLGGSSPgPAGLIIKQARELGFK--GPFVSEGGAK 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 285 TPEYVENLKKDAA--FVtdAVGFVPELVANNPLLANYANAYKAKYRRDLDDQASLAVTCVGALYDALERAPDLSREALTE 362
Cdd:cd06336 232 ADEILKEVGGEAAegFI--GVLPADDDPIASPGAKAFVERYKKKYGEPPNSESALFYDAAYILVKAMEKAGTVDDTKKIR 309
|
....*.
gi 489904514 363 ALRATD 368
Cdd:cd06336 310 AALAML 315
|
|
| PBP1_ABC_HAAT-like |
cd06348 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
48-391 |
1.21e-27 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380571 [Multi-domain] Cd Length: 342 Bit Score: 112.33 E-value: 1.21e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 48 PIAVVAGLTGRAGPWGIPVNDAVRLAVEQINASGGIkskGGAQIDLISVDHQSNPQMAGTQTERVIQVNNVLAVIGNVTS 127
Cdd:cd06348 1 KIGVALSLTGPGALYGQSQKNGAQLAVEEINAAGGV---GGVKIELIVEDTAGDPEQAINAFQKLINQDKVLAILGPTLS 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 128 GATMVGSAVAEKSRTPMVSTdlgdSLTQRGM----KYFFRIGAKASHLAATAVdfsEAMIKATGTKprKVATMAD-DSTF 202
Cdd:cd06348 78 SEAFAADPIAQQAKVPVVGI----SNTAPGItdigPYIFRNSLPEDKVIPPTV---KAAKKKYGIK--KVAVLYDqDDAF 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 203 SQDAIQGAIARIKKTDWDVQENVSFPAGKVsDFLPVLQRLKLSGVDLIFHALFAPDGIQIMRAMKTLNYdlmaSVHIAGA 282
Cdd:cd06348 149 TVSGTKVFPAALKKNGVEVLDTETFQTGDT-DFSAQLTKIKALNPDAIVISALAQEGALIVKQARELGL----KGPIVGG 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 283 P--YTPEYVENLKKDAAFVTDAVGFVPElvANNPLLANYANAYKAKYRRDLDDQASLAVTCVGALYDALERA-----PDL 355
Cdd:cd06348 224 NgfNSPDLIKLAGKAAEGVIVGSAWSPD--NPDPKNQAFVAAYKEKYGKEPDQFAAQAYDAAYILAEAIKKAgsttdRAD 301
|
330 340 350
....*....|....*....|....*....|....*.
gi 489904514 356 SREALTEALRATDLQAGGNPFvlrdgvKFDQAGDNV 391
Cdd:cd06348 302 LRDALARILIAKDFEGPLGPF------SFDADRDGI 331
|
|
| PBP1_ABC_ligand_binding-like |
cd06346 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
48-330 |
7.27e-26 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380569 [Multi-domain] Cd Length: 314 Bit Score: 106.49 E-value: 7.27e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 48 PIAVVAGLTGRAGPWGIPVNDAVRLAVEQINASGGIkskGGAQIDLISVDHQSNPQMAGTQTERVIQVNNVLAVIGNVTS 127
Cdd:cd06346 1 KIGALLPLTGPLASLGPPMLAAAELAVEEINAAGGV---LGKKVELVVEDSQTDPTAAVDAARKLVDVEGVPAIVGAASS 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 128 GATMVGSAVAEKSRTPMVS--------TDLGDSltqrgmKYFFRIgakashlAATAVDFSEAM---IKATGTKprKVATM 196
Cdd:cd06346 78 GVTLAVASVAVPNGVVQISpsstspalTTLEDK------GYVFRT-------APSDALQGVVLaqlAAERGFK--KVAVI 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 197 ADDSTFSQDAIQGAIARIKKTDWDVQENVSFPAGKvSDFLPVLQRLKLSGVDLIFHALFAPDGIQIMRAMKTLNYDLMAS 276
Cdd:cd06346 143 YVNNDYGQGLADAFKKAFEALGGTVTASVPYEPGQ-TSYRAELAQAAAGGPDALVLIGYPEDGATILREALELGLDFTPW 221
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 489904514 277 VhIAGAPYTPEYVENLKKDAafVTDAVGFVPELVAnNPLLANYANAYKAKYRRD 330
Cdd:cd06346 222 I-GTDGLKSDDLVEAAGAEA--LEGMLGTAPGSPG-SPAYEAFAAAYKAEYGDD 271
|
|
| PBP1_SBP-like |
cd19989 |
periplasmic substrate-binding domain of active transport proteins; Periplasmic ... |
49-327 |
2.69e-25 |
|
periplasmic substrate-binding domain of active transport proteins; Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380644 [Multi-domain] Cd Length: 299 Bit Score: 104.67 E-value: 2.69e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 49 IAVVAGLTGRAGPWGIPVNDAVRLAVEQINASGGIkskGGAQIDLISVDHQSNPQMAGTQTERVIQVNNVLAVIGNVTSG 128
Cdd:cd19989 2 IGVLTPLSGPYAALGEEARRGAQLAVEEINAAGGI---LGRPVELVVEDTEGKPATAVQKARKLVEQDGVDFLTGAVSSA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 129 ATMVGSAVAEKSRTPMVST-DLGDSLT-QRGMKYFFRIGAKASHLAATAVDF-SEAMIKatgtkprKVATMADDSTFSQD 205
Cdd:cd19989 79 VALAVAPKAAELKVPYLVTvAADDELTgENCNRYTFRVNTSDRMIARALAPWlAENGGK-------KWYIVYADYAWGQS 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 206 AIQGAIARIKKTDWDVQeNVSFPAGKVSDFLPVLQRLKLSGVDLIFHALFAPDGIQIMRAMKtlNYDLMASVHIAGAPYT 285
Cdd:cd19989 152 SAEAFKEAIEELGGEVV-GTLFAPLGTTDFSSYITQISDSGADGLLLALAGSDAVNFLKQAG--QFGLGKKYKIVGGILS 228
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 489904514 286 PEYV--ENLKKDAAFVTDAVGFVPELVanNPLLANYANAYKAKY 327
Cdd:cd19989 229 IEPLalPALGDAAEGVYGGVRYPPTLD--TPANRAFVEAYEKEY 270
|
|
| PBP1_SBP-like |
cd06329 |
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins ... |
49-364 |
3.29e-21 |
|
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins or SBPs); Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380552 [Multi-domain] Cd Length: 343 Bit Score: 93.88 E-value: 3.29e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 49 IAVVAGLTGRAGPWGIPVNDAVRLAVEQINASGGIkskGGAQIDLISVDHQSNPQMAGTQTERVIQvNNVLAVIGNVTSG 128
Cdd:cd06329 2 IAFIDPLSGPFASVGEIYLKGLQFAIEEINAGGGL---LGRKIELVPFDNKGSPQEALIQLKKAID-QGIRFVLQGNSSA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 129 ATMVGSAVAEK--SRTP----MVST--DLGDSLTqrGMK---YFFRIGAKASHLAATAVDFseamIKATGtKPRKVATMA 197
Cdd:cd06329 78 VAGALIDAIEKhnQRNPdkrvLFLNygAEAPELT--GAKcsfWHFRFDANADMKMAALADY----MKKDG-SIKKVYLIN 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 198 DDSTFSQDAIQGAIARIKKTDWDVQ--ENVSFPAGKVSDFLPVLQRLKLSGVDLIFHALFAPDGIQIMRAMKTLNYDLMA 275
Cdd:cd06329 151 QDYSFGRDVAAAAKKNLKKKRPDIEivGEDLHPLGKVKDFSPYIAKIKASGADTVITGNWGNDLTLLMKAARDSGLKAPF 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 276 SVHIAGAPYTPeyvENLKKDAAFVTDAVGFVPElVANNPLLANYANAYKAKYRRDLDDQASLAVTCVGALYDALERAPDL 355
Cdd:cd06329 231 YTYYADGPGAP---AAIGEAGVGRLVAVAYWHP-NPKTPELEKFAEAFRAKYGRYPDFNIGRTYMGVEMLAAAIKKAGST 306
|
....*....
gi 489904514 356 SREALTEAL 364
Cdd:cd06329 307 DPEKVAKAL 315
|
|
| PBP1_ABC_HAAT-like |
cd19981 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
48-270 |
5.13e-21 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380636 [Multi-domain] Cd Length: 297 Bit Score: 92.74 E-value: 5.13e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 48 PIAVVAGLTGRAGPWGIPVNDAVRLAVEQINASGGIKSKggaQIDLISVDHQSNPQMAGTQTERVIQVNNVLAVIGNVTS 127
Cdd:cd19981 1 KIGFFAPLTGPAAADGKSALHGAELAVEQINAAGGINGK---KVELVVYDDQASPKQAVNIAQKLIEQDKVVAVVSGSYS 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 128 GATMVGSAVAEKSRTPMVSTDLGDSLTQRGMKYFFRIGAKASHLAATAVDFSEAMIKAtgtkpRKVATMADDSTFSQDAI 207
Cdd:cd19981 78 GPTRAAAPIFQEAKVPMVSAYAVHPDITKAGDYVFRVAFLGPVQGRAGAEYAVKDLGA-----KKVAILTIDNDFGKSLA 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489904514 208 QGAIARIKKTDWDVQENVSFPAGKvSDFLPVLQRLKLSGVDLIFHALFAPDGIQIMRAMKTLN 270
Cdd:cd19981 153 AGFKEEAKKLGAEIVSEYAYALGD-RDFRPILTKIKSANPDAIYASGYYAEAAPIVKQARELG 214
|
|
| PBP1_aromatic_compounds-like |
cd06332 |
type 1 periplasmic binding proteins of active transport systems predicted to be involved in ... |
49-391 |
8.35e-21 |
|
type 1 periplasmic binding proteins of active transport systems predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; This group includes the type 1 periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Pssm-ID: 380555 [Multi-domain] Cd Length: 336 Bit Score: 92.66 E-value: 8.35e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 49 IAVVAGLTGRAGPWGIPVNDAVRLAVEQINASggiksKGGAQIDLISVDHQSNPQMAGTQTERVIQVNNVLAVIGNVTSG 128
Cdd:cd06332 2 IGLLAPLTGPFAALGEDMVRGFELALEEVGGE-----VAGRKVELVVEDDAGDPDTAVTKARKLVEQDKVDVLIGPLSGD 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 129 ATMVGSAVAEKSRTPMVSTDLG-DSLTQRGM-KYFFRIGAKASHLAATAVDFseaMIKATGTKprKVATMADDSTFSQDA 206
Cdd:cd06332 77 EGLAVAPYAKEPGVPFINPVAGaDDLTQRAKaPNFFRTSFTGSQWSAPLGDY---AYKELGYK--KVATIGSDYAFGYEQ 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 207 IQGAIARIKKTDWDVQENVSFPAGkVSDFLPVLQRLKlSGVDLIFHALFAPDGIQIMRAMKtlNYDLMASVHIAGA-PYT 285
Cdd:cd06332 152 AAGFKRGFEAAGGEVVQEIWVPLG-TTDFSPYIAQIP-SADDAVFAFLGGADAVRFLKQYR--EFGLKDKIPLIGGgTTV 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 286 PEYVENLKKDAAFVTDAVGFVPElVANNPLLANYANAYKAKYRRDLDDQASLAVTCVGALYDALERAP-DLS-REALTEA 363
Cdd:cd06332 228 DESVLPAMGDAALGIISASHYAE-GLDNPENKKFVAAYKKKFGKLPSLYAAGGYDGAQAILEALEAVGgDVSdKQALAAA 306
|
330 340
....*....|....*....|....*...
gi 489904514 364 LRATDLQAGGNPFvlrdgvKFDQAGDNV 391
Cdd:cd06332 307 LRKVKFDSPRGPF------SFDENRNPV 328
|
|
| PBP1_ABC_HAAT-like |
cd19983 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
49-262 |
1.43e-20 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of hydrophobic amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of hydrophobic amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380638 [Multi-domain] Cd Length: 303 Bit Score: 91.49 E-value: 1.43e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 49 IAVVAGLTGRAGPWGIPVNDAVRLAVEQINASGGIkskGGAQIDLISVDHQSNPQMAGTQTERVIQvNNVLAVIGNVTSG 128
Cdd:cd19983 2 IGFVGGLTGRYSDLGVQGRNGAQLAVEEINAAGGI---NGRPVELIIRDDQQDPEAAKAADRELIA-GGVVAIIGHMTSA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 129 ATMVGSAVAEKSRTPMVS-TDLGDSLTQRGmKYFFRIGAKASHLAATAVDFseaMIKATGTkpRKVATMADDS--TFSQD 205
Cdd:cd19983 78 MTVAVLPVINEAKVLMISpTVSTPELSGKD-DYFFRVTPTTRESAQALARY---AYNRGGL--RRVAVIYDLSnrAYSES 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 489904514 206 AIQGAIARIKKTDWDVQENVSFPAGKVSDFLPVLQRLKLSGVDLIFHALFAPDGIQI 262
Cdd:cd19983 152 WLDNFRSEFEALGGRIVAEIPFSSGADVDFSDLARRLLASKPDGLLLVASAVDTAML 208
|
|
| PBP1_alkylbenzenes-like |
cd06360 |
type 1 periplasmic binding component of active transport systems predicted be involved in ... |
49-391 |
3.57e-18 |
|
type 1 periplasmic binding component of active transport systems predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; This group includes the type 1 periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Pssm-ID: 380583 [Multi-domain] Cd Length: 357 Bit Score: 85.42 E-value: 3.57e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 49 IAVVAGLTGRAGPWGIPVNDAVRLAVEQInasGGikSKGGAQIDLISVDHQSNPQMAGTQTERVIQVNNVLAVIGNVTSG 128
Cdd:cd06360 2 IGVLLPLTGPLAVNGEDVRDGFELYFDEI---GN--QVAGRKIELIVEDDEGKPDVGLTKARKLVERDKVHVLAGIVSSA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 129 -ATMVGSAVAEKSRTPMVSTDLGDSLTQ-RGMKYFFRIGAKASHLAATAVDFSEAMIKAtgtkpRKVATMADDSTFSQDA 206
Cdd:cd06360 77 vAYAVRDYVVEQKIPLVISNAGAAPLTQeLASPYIFRTSFSNGQYDAPFGQYAYEKLGY-----RRIAVMASDYAAGHEQ 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 207 IQGAIARIKKTDWDVQENVSFPAGkVSDFLPVLQRLKLSGVDLIFHALFAPDGIQIMRAMKtlNYDLMASVHIAGAPY-- 284
Cdd:cd06360 152 AGAFARTFKQAGGKVVQEIYPPLG-TADFAPYLARIQQDAADAVWAFFAGADAIRFVKQYD--EYGLKGKLPLVGIGGlv 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 285 TPEYVENLKKDAAFVTDAVGFVPELvaNNPLLANYANAYKAKYRRDLDDQASLAVTCVGALYDALE----RAPDlsREAL 360
Cdd:cd06360 229 DDAILPEQGDAALGIVSYLHYSAAL--DTPENKAFVQAYRKKYGRDPGLYAEGGYVAARAIAEALEavkgNVED--KEAF 304
|
330 340 350
....*....|....*....|....*....|.
gi 489904514 361 TEALRATDLQAGGNPFvlrdgvKFDQAGDNV 391
Cdd:cd06360 305 LEALRKVRFEAPRGPF------RFDPYQQAV 329
|
|
| PBP1_ABC_HAAT-like |
cd06344 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
68-399 |
5.27e-18 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of hydrophobic amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of hydrophobic amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380567 [Multi-domain] Cd Length: 332 Bit Score: 84.58 E-value: 5.27e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 68 DAVRLAVEQINASGGIkskGGAQIDLISVDHQSNPQMAGTQTERVIQVNNVLAVIGNVTSGATMVGSAVAEKSR----TP 143
Cdd:cd06344 19 EGVELAVEEINAAGGV---LGRKIRLVEYDDEASVDKGLAIAQRFADNPDVVAVIGHRSSYVAIPASIIYERAGllmlSP 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 144 MvSTDLgdSLTQRGMKYFFRIGAKASHLAATAVDFseamikATGTKPRKVATMADDSTFSQ---DAIQgaiARIKKTDWD 220
Cdd:cd06344 96 G-ATAP--KLTQHGFKYIFRNIPSDEDIARQLARY------AARQGYKRIVIYYDDDSYGKglaNAFE---EEARELGIT 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 221 VQENVSFPAGKvSDFLPVLQRLK-LSGVDLIFHALFAPDGIQIMRAMKTLNYDlmasVHIAGAP--YTPEYVENLKKDAA 297
Cdd:cd06344 164 IVDRRSYSSDE-EDFRRLLSKWKaLDFFDAIFLAGSMPEGAEFIKQARELGIK----VPIIGGDglDSPELIEIAGKAAE 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 298 FVTDAVGFVPElvANNPLLANYANAYKAKYRRDLDDQASLAVTCVGALYDALERAPDLSREALTEALRATDlqaggnpfv 377
Cdd:cd06344 239 GVVVATVFDPD--DPRPEVRAFVEAFRKKYGREPDVWAAQGYDAVKLLAEAIEKAGSTVPAKIASALRFLE--------- 307
|
330 340
....*....|....*....|....*.
gi 489904514 378 LRDGV----KFDQAGDnVRAKGLVMQ 399
Cdd:cd06344 308 NWEGVtgtySFDANGD-VVGKAIYFK 332
|
|
| PRK15404 |
PRK15404 |
high-affinity branched-chain amino acid ABC transporter substrate-binding protein; |
19-389 |
1.35e-17 |
|
high-affinity branched-chain amino acid ABC transporter substrate-binding protein;
Pssm-ID: 237959 [Multi-domain] Cd Length: 369 Bit Score: 83.92 E-value: 1.35e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 19 TRRRLTLGTGGLAAAMAfpaiVRAQPKRIPIAVVAGLTGRAGPWGIPVNDAVRLAVEQINASGGIKskgGAQIDLISVDH 98
Cdd:PRK15404 2 KSKGKTLLAGCIALALS----HAALADDIKIAIVGPMSGPVAQYGDMEFTGARQAIEDINAKGGIK---GDKLEGVEYDD 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 99 QSNPQMAGTQTERVIQvNNVLAVIGNVTSGATMVGSAVAEKSRTPMVS-TDLGDSLTQRGMKYFFRIGAKASHLAATAVD 177
Cdd:PRK15404 75 ACDPKQAVAVANKVVN-DGIKYVIGHLCSSSTQPASDIYEDEGILMITpAATAPELTARGYQLIFRTIGLDSDQGPTAAK 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 178 FSeamikATGTKPRKVATMADDSTFSQdaiqgAIAR-IKKTDWDVQENVSF----PAGKvSDFLPVLQRLKLSGVDLIFH 252
Cdd:PRK15404 154 YI-----LEKVKPKRIAVLHDKQQYGE-----GLARsVKDGLKKAGANVVFfegiTAGD-KDFSALIAKLKKENVDFVYY 222
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 253 ALFAPDGIQIMR--AMKTLNYDLMAsvhiagapytPEYVEN-----LKKDAA---FVTdavgfVPELVANNPLLANYANA 322
Cdd:PRK15404 223 GGYHPEMGQILRqaREAGLKTQFMG----------PEGVGNkslsnIAGPASegmLVT-----LPKRYDQDPANKAIVDA 287
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489904514 323 YKAKyRRDLDDQASL-AVTCVGALYDALERAPDLSREALTEALRAtdlqaggNPFVLRDG-VKFDQAGD 389
Cdd:PRK15404 288 FKAK-KQDPSGPFVWtTYAAVQSLAAGINRAGSDDPAKVAKYLKA-------NTFDTVIGpLSWDEKGD 348
|
|
| PBP1_amide_urea_BP-like |
cd06356 |
periplasmic component (FmdD) of an active transport system for short-chain amides and urea ... |
48-366 |
5.16e-17 |
|
periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF); This group includes the type 1 periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Pssm-ID: 380579 [Multi-domain] Cd Length: 334 Bit Score: 81.58 E-value: 5.16e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 48 PIAVVAGLTGRAGPWGIPVNDAVRLAVEQINASGGIKskgGAQIDLISVDHQSN----PQMAgtqtERVIQVNNVLAVIG 123
Cdd:cd06356 1 KIGSIFDLSGGLNIYGKPMVHAMKLAVEEINAAGGLL---GRQIELVAYDTQSDmqkyTQYA----QQLILRDKVDVVFG 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 124 NVTSGATMVGSAVAEKSRTPMVStdlgDSLTQRGM--KYFFRIGAKASHLAATAVdfsEAMIKATGtkpRKVATMADDST 201
Cdd:cd06356 74 GITSASREAIRPILRRNKILYFY----NTQYEGGVcdKNTFCTGSTPEQQVSPLI---EWAIKKYG---KKVYIIAADYN 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 202 FSQDAIQGAIARIKKTDWDVQENVSFPAGkVSDFLPVLQRLKLSGVDLIFHALFAPDGIQIMRAMKTLNYD----LMASV 277
Cdd:cd06356 144 FGQISADWVKKYAKKNGGEVVGEEFFPLD-VTDFGPTIQKIQAAKPDFVVSLLVGGNHISFYRQWAAAGLKkkipIVSTV 222
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 278 HIAGAPY---TPEYVENLkkdaafvTDAVGFVPELvaNNPLLANYANAYKAKYrRDLDDQASLAVTCVGALY---DALER 351
Cdd:cd06356 223 FGAGNEHkvlSPPELEGM-------YVSYSYFEEL--DTPANKAFVAKWRAKY-GDEPYINQEAVGVYNAVYlwaEAVEK 292
|
330
....*....|....*
gi 489904514 352 APDLSREALTEALRA 366
Cdd:cd06356 293 AGSTEREAVIAALES 307
|
|
| PBP1_ABC_ligand_binding-like |
cd06341 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
49-373 |
7.92e-16 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Pssm-ID: 380564 [Multi-domain] Cd Length: 340 Bit Score: 78.12 E-value: 7.92e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 49 IAVVAGLTGRAGPWGIPVNDAVRLAVEQINASGGIkskGGAQIDLISVDHQSNPQMAGTQTERVIQVNNVLAVIGNvTSG 128
Cdd:cd06341 2 IGLIYPDTGPGAASFSAARAGAEARFGLANAAGGI---NGRKVEYVWCDDQSDPATNLQAARQLVEDEKVFALVGS-SSA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 129 ATMVGSAVAEKSRTPMVSTDLGDSLTQRGMKYFFrigakASHLAATAVDFSEAMIKATGTKprKVATMADDSTF-SQDAI 207
Cdd:cd06341 78 ASGSANDYLAQAGIPVVGGAGVSVWCFRNMFSNF-----FSLGGGGSTTTYGQYAAALGGT--KAAVVVTDIPAaSQQLA 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 208 QGAIARIKKTDWDVQENVSFPAGkVSDFLPVLQRLKLSGVDLIFHALFAPDGIQIMRAMKTLNYDLmaSVHIAGAPYTPE 287
Cdd:cd06341 151 QQLAASLRAAGVEVVGTAPYAAA-APDYTAVAQAAKAAGADAVVGVLDPDVAARVLKAARAQGLDL--KVALSPSGYDPS 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 288 YVENLKKDAAFVTDAVGFVPeLVANNPLLANYANAYkAKYRRDLDDQASLAVTCVGALYDALERA-----PDLSREALTE 362
Cdd:cd06341 228 VLAAYGAALAGVSVASTFLP-FEADTPAVKAYRAAM-AKYAPELQDPLQQFALSGYIAADLFVRGleaagGCPTRAAFIK 305
|
330
....*....|..
gi 489904514 363 ALRA-TDLQAGG 373
Cdd:cd06341 306 ALRDvKDYDAGG 317
|
|
| PBP1_ABC_ligand_binding-like |
cd06334 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
49-272 |
1.07e-15 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Pssm-ID: 380557 [Multi-domain] Cd Length: 360 Bit Score: 78.05 E-value: 1.07e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 49 IAVVAGLTGRAGPWGIPVNDAVRLAVEQINASGGIkskGGAQIDLISVDHQSNPQMAGTQTERVIQVNNVLAVIGNVTsG 128
Cdd:cd06334 2 IGLLTDLTGPTADVGKPYAQGVRDYLNYVNEEGGI---NGVKIELEECDTGYKVPRAVACYKRLKAQDGVVAILGWGT-G 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 129 ATMVGSAVAEKSRTPMVSTDLGDSLTQRGMK--YFFRIGAKASHLAATAVDFSEAMIKATGTKPrKVATMADDSTFSQDA 206
Cdd:cd06334 78 DTEALAPRVAKDKIPYISASYGRSLADDGKVfpYNFFVGATYSSQARALLKYIAQEWGGKLKGP-KVAFVYHDSPFGREP 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489904514 207 IQGAIARIKKTDWDVQENVSFPAGKVsDFLPVLQRLKLSGVDLIFHALFAPDGIQIMRAMKTLNYD 272
Cdd:cd06334 157 IPALKAYAKELGFEVVAEQVPSPGAL-DATAQWLRIRRAGPDYVIIQGTGGSVAVIIKDAKRLGLK 221
|
|
| PBP1_ABC_ligand_binding-like |
cd06326 |
periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to ... |
47-373 |
1.44e-15 |
|
periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions; This group includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); its ligand specificity has not been determined experimentally, however.
Pssm-ID: 380549 [Multi-domain] Cd Length: 339 Bit Score: 77.20 E-value: 1.44e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 47 IPIAVVAGLTGRAGPWGIPVNDAVRLAVEQINASGGIkskGGAQIDLISVDHQSNPQMAGTQTERVIQVNNVLAVIGNVT 126
Cdd:cd06326 1 IVIGQSAPLSGPLAELGREYLAGAKAYFDQVNAAGGI---NGRKIRLVTLDDGYDPARTVENTRQLIEQDKVVALFGYVG 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 127 SGATMVGSAVAEKSRTPMVSTDLG-DSLTQRGMKYFFrigakasHLAATAVDFSEAMIK-ATGTKPRKVATMADDSTFSQ 204
Cdd:cd06326 78 TANVEAVLPLLEEAGVPLVGPLTGaDSLREPGNPYVF-------HVRASYADEVEKIVRhLATLGLKRIAVVYQDDPFGK 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 205 DAIQGAIARIKKTDWDVQENVSFPAGKvSDFLPVLQRLKLSGVDLIFHALFAPDGIQIMRAMKTLNYdlmasvhiAGAPY 284
Cdd:cd06326 151 EGLAAAEAALAARGLEPVATAAVARNA-ADVAAAAAALAAAKPQAVVLIAAGKAAAAFIKALRAAGG--------AAQFY 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 285 TPEYVENLKKDAAFVTDAVGFVPELVANNPLLANYANAykAKYRRDLDDQASLAVT------CVGA--LYDALERA-PDL 355
Cdd:cd06326 222 GLSVVGAAALAKALGDAARGVVVSQVVPNPWSTTLPLV--REYQAAMKAAGPKEPSyaslegYIAArvLVEALRRAgRNP 299
|
330
....*....|....*....
gi 489904514 356 SREALTEALR-ATDLQAGG 373
Cdd:cd06326 300 TRESLVAALEsLGRLDLGG 318
|
|
| PBP1_RPA0668_benzoate-like |
cd20014 |
type 1 periplasmic binding-protein component of an ABC system (RPA0668), involved in in the ... |
49-391 |
1.76e-15 |
|
type 1 periplasmic binding-protein component of an ABC system (RPA0668), involved in in the active transport of lignin-derived benzoate derivative compounds, and its close homologs; This group includes RPA0668 from Rhodopseudomonas palustris and its close homologs in other bacteria. Rpa0668 is the periplasmic binding-protein component of an ABC system that is involved in the active transport of lignin-derived benzoate derivative compounds. Members of this group has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP).
Pssm-ID: 380667 [Multi-domain] Cd Length: 346 Bit Score: 77.28 E-value: 1.76e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 49 IAVVAGLTGRAGPWGIPVNDAVRLAVEQINasggikSK-GGAQIDLISVDHQSNPQMAGTQTERVIQVNNVLAVIGNVTS 127
Cdd:cd20014 2 IGLLLPYSGVYAALGEDIRNGFQLYLDEHG------GKlGGRPIELVKEDDEADPDVALQKARKLIEQDKVDVLVGPVSS 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 128 GATMVGSAVAEKSRTPMVSTDLG-DSLTQ-RGMKYFFRIgakashlAATAVDFSEAMIKATGTKPRK-VATMADDSTFSQ 204
Cdd:cd20014 76 GVALAIRDVVEQAKVPLIVANAGaNALTRaACSPYIFRT-------SFSNWQLGYALGKYAAENVGKtVVTIASDYAAGR 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 205 DAIQGAIARIKKTDWDVQENVSFPAGKVSDFLPVLQRLKLSGVDLIFHALFAPDGIQIMRAMKTLNYDLMASVHIAGAPY 284
Cdd:cd20014 149 EVVAGFKEGFEAAGGKVVGEIWTPLGTTTDFSPYLTQIAASGPDAVYAFFAGADAVRFVKQYAEFGLKGKIPLYGPGFLT 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 285 TPEYVENLKKDAAFVTDAVGFVPELvaNNPLLANYANAYKAKYRRDLDDQASLAVTCVGALYDALERA-PDLS-REALTE 362
Cdd:cd20014 229 DEDVLPALGEAAEGIITVLHYAPTL--DNPANRAFVAAYQAKYGRLPDVYAVQGYDAAQVIDAALEAVgGDTSdKDILAA 306
|
330 340
....*....|....*....|....*....
gi 489904514 363 ALRATDLQAGGNPFvlrdgvKFDQAGDNV 391
Cdd:cd20014 307 ALELGSIDSPRGPF------RFDPTTHNP 329
|
|
| PBP1_ABC_HAAT-like |
cd19985 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type ... |
49-329 |
2.88e-15 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of hydrophobic amino acids or peptides; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of hydrophobic amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Pssm-ID: 380640 [Multi-domain] Cd Length: 321 Bit Score: 76.16 E-value: 2.88e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 49 IAVVAGLTGRAGPWGIPVNDAVRLAVEQINASGGIKskgGAQIDLISVDHQSNPQMAGTQTERVIQvNNVLAVIGNVTSG 128
Cdd:cd19985 2 IAVVGPMSGKSASKGKSMLRGAELYIDQINAAGGIN---GKKVKLDVFDDQNDPDAARKAAQIIVS-DKALAVIGHYYSS 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 129 ATMVGSAVAEKSRTPMVS-TDLGDSLTQRGmKYFFRI----GAKASHLAATAVDFseamikatgTKPRKVATMADDSTFS 203
Cdd:cd19985 78 ASIAAGKIYKKAGIPAITpSATADAVTRDN-PWYFRVifndSLQGRFLANYAKKV---------LKKDKVSIIYEEDSYG 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 204 QDAIQGAIARIKKTDWDVQENVSFPagkvSDFLPVLQRLK---------LSGVDLIFHALFAPDGIQIMRAMK--TLNYD 272
Cdd:cd19985 148 KSLASVFEATARALGLKVLKKWSFD----TDSSQLDQNLDqivdelkkaPDEPGVIFLATHADEGAKLIKKLRdaGLKAP 223
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489904514 273 LMASVHIAGAPYTPEYVE--NLKKDAAFVTDAVgfvpelVANNPLLANYAN--------AYKAKYRR 329
Cdd:cd19985 224 IIGPDSLASESFAQGFAEypEEKEEPGYYTDGI------YATSPFIFDIANekaqkfrdTYQKRYGE 284
|
|
| PBP1_SBP-like |
cd06328 |
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins ... |
49-266 |
3.09e-13 |
|
periplasmic substrate-binding domain of active transport proteins (substrate binding proteins or SBPs); Periplasmic substrate-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380551 [Multi-domain] Cd Length: 336 Bit Score: 70.41 E-value: 3.09e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 49 IAVVAGLTGRAGPWGIPVNDAVRLAVEQinASGGIKSKGGAQIDLISVDHQSNPQMAGTQTERVIQVNNVLAVIGNVTSG 128
Cdd:cd06328 2 IGVITSLTGPLAAYGKQTERGFELGLEY--ATDGTMEVDGRKIEVIVKDDQGDPDTAKAAATELIGDDGVDILVGTVSSA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 129 ATMVGSAVAEKSRTPMVSTDLG-DSLTQRGM-KYFFRIGAKASHLAATAVDFseamikATGTKPRKVATMADDSTFSQDA 206
Cdd:cd06328 80 VALALAPVAEQNKKILIVGPAAaDSITGENWnKYTFRTSRNSWQDAIAGAKA------LADPLGKSVAFLAQDYAFGQDG 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 207 IQGAIARIKKTDWDVQENVSFPAGkVSDFLPVLQRLKLSGVDLIFHALFAPDGIQIMRAM 266
Cdd:cd06328 154 VAAFKKALEAKGGKIVGEELVPVT-TTDFTPYLQRILDAKPDVLFVAWAGTGALTLWQQL 212
|
|
| PBP1_ABC_ligand_binding-like |
cd19978 |
periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to ... |
47-251 |
8.04e-13 |
|
periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to be involved in the uptake of amino acids, peptides, or inorganic ions; This group includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); its ligand specificity has not been determined experimentally, however.
Pssm-ID: 380633 [Multi-domain] Cd Length: 341 Bit Score: 69.14 E-value: 8.04e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 47 IPIAVVAGLTGRAGPWGIPVNDAVRLAVEQINASGGIKskgGAQIDLISVDHQSNPQMAGTQTERVIQVNNVLAVIGNV- 125
Cdd:cd19978 1 IRLGMSAALSGPAAELGNEMKRGIEAAFNEVNAQGGVN---GRKIKLIALDDGYEPDRTVKNTKKLIEEDKVFALIGYVg 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 126 --TSGATMvgsAVAEKSRTPMVSTDLG-DSLTQRGMKYFFrigakasHLAATAVDFSEAMIK---ATGtKPRKVATMADD 199
Cdd:cd19978 78 tpTALAAL---PLANEKKIPLFGPFTGaEFLRTPFLPYVF-------NLRASYADETEALVDylvKTL-GPKRIAIFYQN 146
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 489904514 200 STFSQDAIQGAIARIKKTDWDVQENVSFPAGKVsDFLPVLQRLKLSGVDLIF 251
Cdd:cd19978 147 DAFGLAGLEGAKKALKKRGLTPVAEGSYTRNTL-DVEEALAKILKAKPEAII 197
|
|
| ANF_receptor |
pfam01094 |
Receptor family ligand binding region; This family includes extracellular ligand binding ... |
66-400 |
1.84e-12 |
|
Receptor family ligand binding region; This family includes extracellular ligand binding domains of a wide range of receptors. This family also includes the bacterial amino acid binding proteins of known structure.
Pssm-ID: 460062 [Multi-domain] Cd Length: 347 Bit Score: 68.18 E-value: 1.84e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 66 VNDAVRLAVEQINASGGIksKGGAQIDLISVDHQSNPQMAGTQTERVIQvNNVLAVIGNVTSG-ATMVGSaVAEKSRTPM 144
Cdd:pfam01094 2 VLLAVRLAVEDINADPGL--LPGTKLEYIILDTCCDPSLALAAALDLLK-GEVVAIIGPSCSSvASAVAS-LANEWKVPL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 145 VSTDLGDSL--TQRGMKYFFRIGAKASHLAATAVDfseaMIKATGTKprKVATMADDSTFSQDAIQGAIARIKKTDWDVQ 222
Cdd:pfam01094 78 ISYGSTSPAlsDLNRYPTFLRTTPSDTSQADAIVD----ILKHFGWK--RVALIYSDDDYGESGLQALEDALRERGIRVA 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 223 ENVSFPAGKVSDFLP-VLQRLKLSGVDLIFHALFAPDGIQIMRAMKTLNYDLMASVHIAGAPYTPEYVENLKKDAAFVTD 301
Cdd:pfam01094 152 YKAVIPPAQDDDEIArKLLKEVKSRARVIVVCCSSETARRLLKAARELGMMGEGYVWIATDGLTTSLVILNPSTLEAAGG 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 302 AVGFVPeLVANNPLLANYANAYKAKYRRDLDDQASLAVTCVGALYD-------ALERA--------------PDLSREAL 360
Cdd:pfam01094 232 VLGFRL-HPPDSPEFSEFFWEKLSDEKELYENLGGLPVSYGALAYDavyllahALHNLlrddkpgracgalgPWNGGQKL 310
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 489904514 361 TEALRATDLQ-AGGNpfvlrdgVKFDQAGDNVRAKGLVMQL 400
Cdd:pfam01094 311 LRYLKNVNFTgLTGN-------VQFDENGDRINPDYDILNL 344
|
|
| PBP1_SBP-like |
cd19987 |
periplasmic substrate-binding domain of active transport proteins; Periplasmic ... |
55-380 |
2.85e-12 |
|
periplasmic substrate-binding domain of active transport proteins; Periplasmic substrate-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Pssm-ID: 380642 [Multi-domain] Cd Length: 353 Bit Score: 67.74 E-value: 2.85e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 55 LTGRAGPWGIPVNDAVRLAVEQINASGG-------IKSKG--GAQIDLISVDHQSNPQMAGTQTERVIQVNNVLAVIGNV 125
Cdd:cd19987 8 LSGPYAPQGEDQRRGFELAVDHLNNGGGlvdkdsrLSGDGilGKKVELVTADTETKADTAVDNAKRLIEQDGAVMITGGS 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 126 TSGATMVGSAVAEKSRTP-MVSTDLGDSLTQR-GMKYFFRIGAKAsHLAATAVdfSEAMIKATGTKpRKVATMADDSTFS 203
Cdd:cd19987 88 SSAVAVAAQKLAQKEGVLyFAGLSHSNDTTGKdCHRYGFRECFNA-HMSAKAL--APYLVEKFGKD-RKYFYLTADYTWG 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 204 QDAIQGAIARIKKTDWDVQENVSFPAGKvSDFLPVLQRLKLSGVDLIFHALFAPDGIQIMRAMKTLN-YDLMASVhiagA 282
Cdd:cd19987 164 HSTEQSMREYTEAHGWKTVGNPATPLGE-TDFSAALLNAADSGADVLVLVLFGRDMVNALKQAKQFGlLKKMDIV----V 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 283 PYTPEYV--ENLKKDAAFVTDAVGFVPELVANNPLLANYANAYKAKYRRDLDDQASLAVTCVgALY-DALERAPDLSREA 359
Cdd:cd19987 239 PLLTAFMaeSVGPEIMEGVLGTVNWHWSLPDDYSYAFGKAEAFEKEYGAYPSQAAASAYVQV-LQYaAAVERAGSFDPPA 317
|
330 340
....*....|....*....|.
gi 489904514 360 LTEALRATDLQAGGNPFVLRD 380
Cdd:cd19987 318 VIRALEGHEYTLLKGEQYWRA 338
|
|
| PBP1_ABC_ligand_binding-like |
cd19979 |
amino acid amide ABC transporter substrate binding protein haat family; This subgroup includes ... |
49-266 |
1.70e-11 |
|
amino acid amide ABC transporter substrate binding protein haat family; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Pssm-ID: 380634 [Multi-domain] Cd Length: 350 Bit Score: 65.33 E-value: 1.70e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 49 IAVVAGLTGRAGPWGIPVNDAVRLAVEQINASGGIkskGGAQIDLISVDHQSNPQMAGTQTERVIQVNNVLAVIGNVTSG 128
Cdd:cd19979 2 IGLDADLSGGSAASGEAIKRGIQLAIDEINAAGGL---LGRKLELVAKDHRGNPARGVDNLREFAADPDVLAVFGGLHSP 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 129 ATMVGSAVAEKSRTP-MVSTDLGDSLTQRGMK--YFFRIGAKASHLAATAVDFseamikATGTKPRKVATMADDS----- 200
Cdd:cd19979 79 VLLAELDFIHELKIPyLVPWAAATPITRNGYSpnYIFRLSVDDSLAGPFLVEY------ALKKGCKRPALLLENTgwgrs 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489904514 201 --TFSQDAIQGAIARIKKTDWdvqenvsFPAGKVsDFLPVLQRLKLSGVDLIFHALFAPDGIQIMRAM 266
Cdd:cd19979 153 nlKAMTKALAKKGLQPVGVEW-------FNWGDT-DAKPQLRALKAAGADAILLVANAPEGAAIVKAL 212
|
|
| PBP1_Nba-like |
cd06359 |
type 1 periplasmic binding component of active transport systems predicted to be involved in ... |
49-368 |
5.42e-11 |
|
type 1 periplasmic binding component of active transport systems predicted to be involved in 2-nitrobenzoic acid degradation pathway; This group includes the type 1 periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Pssm-ID: 380582 [Multi-domain] Cd Length: 333 Bit Score: 63.43 E-value: 5.42e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 49 IAVVAGLTGRAGPWGIPVNDAVRLAVEQINasGGIkskGGAQIDLISVDHQSNPQMAGTQTERVIQVNNVLAVIGNVTSG 128
Cdd:cd06359 2 IGFITTLSGPAAVLGQDMRDGFNLALEQLG--GKL---GGLPVEVVVEDDQLKPDVAKQAAERLIERDKVDFVTGIIFSN 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 129 ATMVGSAVAEKSRTPMVSTDLGDS-LTQRGMK-YFFRIGAKASHLaatavdfSEAMIK-ATGTKPRKVATMADDSTFSQD 205
Cdd:cd06359 77 VMLAVVKPVVDSKVFYISANAGPSdLAGKGCNpNFFVTSWQNDQL-------HEAAGKyANDKGYKRVYLLAPNYQAGKD 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 206 AIQGAIARIKKTdwdVQENVSFPAGKVsDFLPVLQRLKLSGVDLIFHALFAPDGIQIMRAMKTLNydLMASVHIagapYT 285
Cdd:cd06359 150 ALAGFKRTYKGE---VVGEIYTPLGQL-DFSAELAQIRAAKPDAVFAFYPGGMGVNFVKQYAQAG--LKKKIPL----YT 219
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 286 PEYVENLKKDAAFVTDAVGFvpELVAN-NPLLANYAN-----AYKAKYRRDLDDQASLAVTCVGALYDALERA--PDLSR 357
Cdd:cd06359 220 VGTLDDEDLLPAMGDAALGV--LSVSQwSPDLDNPENkrfvaAFRKKYGRPPSNYAAQGYDAALLIDAAVKAVggDLSDK 297
|
330
....*....|.
gi 489904514 358 EALTEALRATD 368
Cdd:cd06359 298 DALRAALRKAD 308
|
|
| PBP1_ABC_ligand_binding-like |
cd06337 |
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type ... |
49-369 |
3.21e-09 |
|
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions; This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Pssm-ID: 380560 [Multi-domain] Cd Length: 354 Bit Score: 58.08 E-value: 3.21e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 49 IAVVAGLTGRAGPWGIPVNDAVRLAVEQINAsGGIKSKGGA-QIDLISVDHQSNPQMAGTQTERVIQVNNVLAVIGNVTS 127
Cdd:cd06337 2 IGRVSPLTGPLAAFGEADPWVLEQIREAFAD-GGIKVGGKKyPVEIVVRDSQSDPNRAGEAARDLILRDKVDLMLASGTP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 128 GATMVGSAVAEKSRTPMVSTDL----------GDSltQRGMKYFFrigakasHLAATAVDFS---EAMIKATGTkPRKVA 194
Cdd:cd06337 81 DTVNPVADQCEANGVPCISTDApwqawffgrgGDP--AKGFKWTF-------HFFWGLEDIAanfLGMWDQVPT-NKVVG 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 195 TM----ADDSTFSqDAIQGAiarIKKTDWDVQENVSFPAGkVSDFLPVLQRLKLSGVDLIFHALFAPDGIQIMRAMKTLN 270
Cdd:cd06337 151 LLwpndPDGTAFA-DAFLGL---PAAAGYTLVDPGRFPPG-TDDFSSIINAFKKAGVEIVTGVMIPPDFATFWRQAAQQG 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 271 YDLMAsVHIAGAPYTPEYVENLKKDAAFVTDAVGFVPELVANNPLL----ANYANAYKAKYRRDLDDQASLAVTCVGALY 346
Cdd:cd06337 226 FKPKV-VTIGKALLFPSAVAALGDLGDGLSTEVWWSPAHPFKSSLTgqtaAELADAYEKATGKQWTQPLGYAHALFEVAV 304
|
330 340
....*....|....*....|...
gi 489904514 347 DALERAPDLSREALTEALRATDL 369
Cdd:cd06337 305 DALKRAGSPDDEAVRAALADTDL 327
|
|
| PBP1_RPA0985_benzoate-like |
cd20013 |
type 1 periplasmic binding-protein component of an ABC system (RPA0985), involved in the ... |
49-267 |
4.64e-08 |
|
type 1 periplasmic binding-protein component of an ABC system (RPA0985), involved in the active transport of lignin-derived benzoate derivative compounds, and its close homologs; This group includes RPA0985 from Rhodopseudomonas palustris and its close homologs in other bacteria. Rpa0985 is the periplasmic binding-protein component of an ABC system that is involved in the active transport of lignin-derived benzoate derivative compounds. Members of this group has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP).
Pssm-ID: 380666 [Multi-domain] Cd Length: 356 Bit Score: 54.57 E-value: 4.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 49 IAVVAGLTGRAGPWGIPVNDAVRLAVEQinaSGgiKSKGGAQIDLISVDHQ-SNPQMAGTQTERVIQVNNVLAVIGNVTS 127
Cdd:cd20013 2 VGVIGPFSGPFADYGKQFDRGIDLYLKL---HG--DKVGGRKVEVIYRDDGgPNPAVAKRLAQELIVRDKVQILIGFGFT 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 128 GATMVGSAVAEKSRTPMVSTDLGDSLTQRGMKYFFRIGAKASHLAATAVDFseamikATGTKPRKVATMADDSTFSQDAI 207
Cdd:cd20013 77 PNALAVAPVATEAKTPTVIMNAATSSITRKSPYFVRTSFTMWQVAYPMGKW------AAKNGIKKAYTAVADYAPGHDAE 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489904514 208 QGAIARIKKTDWDVQENVSFPAGkVSDFLPVLQRLKLSGVDLIFhaLFAPDG---IQIMRAMK 267
Cdd:cd20013 151 TAFKKAFEAAGGKIVGSIRVPLA-TPDFAPFMQRIKDAKPDAVF--VFVPAGapsIGFLKAYA 210
|
|
| PBP1_FmdD-like |
cd06355 |
periplasmic component (FmdD) of an active transport system for short-chain amides and urea ... |
65-129 |
4.69e-08 |
|
periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF); This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type 1 periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Pssm-ID: 380578 [Multi-domain] Cd Length: 347 Bit Score: 54.50 E-value: 4.69e-08
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489904514 65 PVNDAVRLAVEQINASGGIKskgGAQIDLISVDHQSNPQMAGTQTERVIQVNNVLAVIGNVTSGA 129
Cdd:cd06355 18 PLVDATLLAIDEINAAGGLL---GRKIEPVIEDGASDWPTFAEKAEKLITQDKVAVIFGCWTSAS 79
|
|
| Peripla_BP_5 |
pfam13433 |
Periplasmic binding protein domain; This domain is found in a variety of bacterial periplasmic ... |
47-127 |
7.41e-08 |
|
Periplasmic binding protein domain; This domain is found in a variety of bacterial periplasmic binding proteins.
Pssm-ID: 463875 [Multi-domain] Cd Length: 363 Bit Score: 54.13 E-value: 7.41e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 47 IPIAVVAGLTGRAGPWGIPVNDAVRLAVEQINASGGIKskgGAQIDLISVDHQSNPQMAGTQTERVIQVNNVLAVIGNVT 126
Cdd:pfam13433 1 IKVGVLHSLTGTMAISERSLKDATLMAIEEINAAGGVL---GRKIEPVVVDPASDWPLFAEKARKLIDQDKVRVVFGCWT 77
|
.
gi 489904514 127 S 127
Cdd:pfam13433 78 S 78
|
|
| PBP1_glutamate_receptors-like |
cd06269 |
ligand-binding domain of family C G-protein couples receptors (GPCRs), membrane bound guanylyl ... |
49-270 |
1.02e-07 |
|
ligand-binding domain of family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as natriuretic peptide receptors (NPRs), and N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of ionotropic glutamate rece; This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type 1 family. The family C GPCRs consists of metabotropic glutamate receptor (mGluR), a calcium-sensing receptor (CaSR), gamma-aminobutyric acid receptor (GABAbR), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing variants of the orphan receptors are not included in this CD. The family C GPCRs are activated by endogenous agonists such as amino acids, ions, and sugar based molecules. Their amino terminal ligand-binding region is homologous to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). The ionotropic glutamate receptors (iGluRs) have an integral ion channel and are subdivided into three major groups based on their pharmacology and structural similarities: NMDA receptors, AMPA receptors, and kainate receptors. The family of membrane bound guanylyl cyclases is further divided into three subfamilies: the ANP receptor (GC-A)/C-type natriuretic peptide receptor (GC-B), the heat-stable enterotoxin receptor (GC-C)/sensory organ specific membrane GCs such as retinal receptors (GC-E, GC-F), and olfactory receptors (GC-D and GC-G).
Pssm-ID: 380493 [Multi-domain] Cd Length: 332 Bit Score: 53.58 E-value: 1.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 49 IAVVAGLTGRAgPWGIPVNDAVRLAVEQINASGGIKSKggAQIDLISVDHQSNP-QMAGTQTERVIQvNNVLAVIGNVTS 127
Cdd:cd06269 2 IGALLPVHDYL-ESGAKVLPAFELALSDVNSRPDLLPK--TTLGLAIRDSECNPtQALLSACDLLAA-AKVVAILGPGCS 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 128 GATMVGSAVAEKSRTPMVS---TDLGDSLTQRgMKYFFRIGAKASHLAatavDFSEAMIKATGTkpRKVATMADDSTFSQ 204
Cdd:cd06269 78 ASAAPVANLARHWDIPVLSygaTAPGLSDKSR-YAYFLRTVPPDSKQA----DAMLALVRRLGW--NKVVLIYSDDEYGE 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489904514 205 DAIQGAIARIKKTDWDVQENVSFPAGKVSDFLPVLQRLKLSGVDLIFhALFAPDGI-QIMRAMKTLN 270
Cdd:cd06269 151 FGLEGLEELFQEKGGLITSRQSFDENKDDDLTKLLRNLRDTEARVII-LLASPDTArSLMLEAKRLD 216
|
|
| PBP1_AmiC |
cd06357 |
periplasmic binding domain of amidase (AmiC) that belongs to the type 1 periplasmic binding ... |
48-127 |
1.61e-07 |
|
periplasmic binding domain of amidase (AmiC) that belongs to the type 1 periplasmic binding fold protein family; This group includes the periplasmic binding domain of amidase (AmiC) that belongs to the type 1 periplasmic binding fold protein family. AmiC controls expression of the amidase operon by the ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon are induced.
Pssm-ID: 380580 [Multi-domain] Cd Length: 357 Bit Score: 52.97 E-value: 1.61e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 48 PIAVVAGLTGRAGPWGIPVNDAVRLAVEQINASGGIkskGGAQIDLISVDHQSNPQMAGTQTERVIQVNNVLAVIGNVTS 127
Cdd:cd06357 1 RVGLLFSQTGVTAIIEQSMLNGALLAIEEINAAGGV---NGRPIEPVVYDPASDPDRYRELAERLLLEDGVRHIFGCYTS 77
|
|
| PBP1_NHase |
cd06358 |
type 1 periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively ... |
49-147 |
5.28e-07 |
|
type 1 periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides; This group includes the type 1 periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified into two subgroups: ferric NHases and cobalt NHases.
Pssm-ID: 380581 [Multi-domain] Cd Length: 333 Bit Score: 51.05 E-value: 5.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904514 49 IAVVAGLTGRAGPWGIPVNDAVRLAVEQINASGGIkskGGAQIDLISVDHQSNPQMAGTQTERVIQVNNVLAVIGNVTSG 128
Cdd:cd06358 2 IGLLIPLSGPAGLWGPSCEACAELAAAEINAAGGI---LGREVELVLIDAGGPPAEVAAAARRLVDDGAVDAIVGMHTSA 78
|
90 100
....*....|....*....|.
gi 489904514 129 atmVGSAVAE--KSRTPMVST 147
Cdd:cd06358 79 ---VRQALANavGGRVPYVYT 96
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