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Conserved domains on  [gi|489904890|ref|WP_003808318|]
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MULTISPECIES: DotU family type VI secretion system protein [Bordetella]

Protein Classification

DotU family type VI secretion system protein( domain architecture ID 11482536)

DotU family type VI secretion system protein similar to Enterobacter cloacae type VI secretion system protein ImpK

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK07033 PRK07033
DotU family type VI secretion system protein;
24-415 0e+00

DotU family type VI secretion system protein;


:

Pssm-ID: 180801 [Multi-domain]  Cd Length: 427  Bit Score: 608.20  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890  24 RLRPHEYVISGSNPLVAAANPLLDLIPQIRATTAHPAPAMLREYLVDEVRQFELRAQQAGIPNETILGARYCLCTALDEA 103
Cdd:PRK07033  35 QPRPGRGAASGLNPLVAAANPLLNLIPQIRSTVHHPDPASLREQLLDEIRQFEERAQQAGVPYEVIIGARYCLCTALDEA 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890 104 AALTPWGGGGVWSAHSLLVTFHNETWGGEKFFQLLAKLSQNPGQHLDLLELLYYCLLLGFEGRYRVIDNGRTQLETLRQR 183
Cdd:PRK07033 115 AALTPWGGSGVWSSHSLLVTFHNETWGGEKFFQLLARLSQNPRQHLDLLELLYFCLALGFEGRYRVLDNGRSQLEALRQR 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890 184 LLRILRGARGEYPRALSPHWRDTPVQQALRRLPVPLWAYGALAAALALALFWGLSWRLGERSDAVFAAVARLKPPTVQIA 263
Cdd:PRK07033 195 LAQMIRSVRGEYAPALSPHWRDVPVARVLLRPTVPLWVCVALALLLALLLFIGLRWRLADRSDPVFAAIYALRLPVVQIA 274

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890 264 PAPRPAPAPRL-AVFLQPEVRDRLVTVRDEVDRSVVVLRGDGLFESGAVAVRDRYAPVLARVAEALGQTRGDIVVRGYTD 342
Cdd:PRK07033 275 RPAPQPPPAPRlAKFLEPEIRAGLVAVRDEADRSVVTLRGDGLFASASTSVRDRYQPVLARVADALNQVKGNVLVTGYSD 354

                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489904890 343 NVPIRTARFPSNWHLSQARAEAVKAVIDARLGQAGRVRAEGRGEADPLAPNDTPAGRSVNRRVEITVMVPPAP 415
Cdd:PRK07033 355 NVPIRTARFPSNWELSQARAQAVRALLAARLGQPERVTAEGRGDSDPVAPNDSAENRARNRRVEITLLVAPGS 427
 
Name Accession Description Interval E-value
PRK07033 PRK07033
DotU family type VI secretion system protein;
24-415 0e+00

DotU family type VI secretion system protein;


Pssm-ID: 180801 [Multi-domain]  Cd Length: 427  Bit Score: 608.20  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890  24 RLRPHEYVISGSNPLVAAANPLLDLIPQIRATTAHPAPAMLREYLVDEVRQFELRAQQAGIPNETILGARYCLCTALDEA 103
Cdd:PRK07033  35 QPRPGRGAASGLNPLVAAANPLLNLIPQIRSTVHHPDPASLREQLLDEIRQFEERAQQAGVPYEVIIGARYCLCTALDEA 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890 104 AALTPWGGGGVWSAHSLLVTFHNETWGGEKFFQLLAKLSQNPGQHLDLLELLYYCLLLGFEGRYRVIDNGRTQLETLRQR 183
Cdd:PRK07033 115 AALTPWGGSGVWSSHSLLVTFHNETWGGEKFFQLLARLSQNPRQHLDLLELLYFCLALGFEGRYRVLDNGRSQLEALRQR 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890 184 LLRILRGARGEYPRALSPHWRDTPVQQALRRLPVPLWAYGALAAALALALFWGLSWRLGERSDAVFAAVARLKPPTVQIA 263
Cdd:PRK07033 195 LAQMIRSVRGEYAPALSPHWRDVPVARVLLRPTVPLWVCVALALLLALLLFIGLRWRLADRSDPVFAAIYALRLPVVQIA 274

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890 264 PAPRPAPAPRL-AVFLQPEVRDRLVTVRDEVDRSVVVLRGDGLFESGAVAVRDRYAPVLARVAEALGQTRGDIVVRGYTD 342
Cdd:PRK07033 275 RPAPQPPPAPRlAKFLEPEIRAGLVAVRDEADRSVVTLRGDGLFASASTSVRDRYQPVLARVADALNQVKGNVLVTGYSD 354

                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489904890 343 NVPIRTARFPSNWHLSQARAEAVKAVIDARLGQAGRVRAEGRGEADPLAPNDTPAGRSVNRRVEITVMVPPAP 415
Cdd:PRK07033 355 NVPIRTARFPSNWELSQARAQAVRALLAARLGQPERVTAEGRGDSDPVAPNDSAENRARNRRVEITLLVAPGS 427
DotU COG3455
Type VI protein secretion system component TssL/VasF/DotU [Intracellular trafficking, ...
 33-255 2.10e-70

Type VI protein secretion system component TssL/VasF/DotU [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442678 [Multi-domain]  Cd Length: 233  Bit Score: 221.77  E-value: 2.10e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890  33 SGSNPLVAAANPLLDLIPQIRATTAHPAPAMLREYLVDEVRQFELRAQQAGIPNETILGARYCLCTALDEAAALTPWGGG 112
Cdd:COG3455   11 AGLNPLVDAASPLLLLVVRLRQGAEPPDPAALRQRLVEEIRRFERRLRAAGYSPEDIEAARYALCALLDEAVLNTPWGGR 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890 113 GVWSAHSLLVTFHNETWGGEKFFQLLAKLSQNPGQHLDLLELLYYCLLLGFEGRYRVIDnGRTQLETLRQRLLRILRGAR 192
Cdd:COG3455   91 SEWSRHPLQSTFFNETWGGEKFFELLERLLQEPAAHLDLLELYYLCLLLGFEGRYRVEG-GREELEALRRRLYQLIRRLR 169

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489904890 193 GEYPRALSPHWRDTPVQQALRRLPVPLWAYGALAAALALALFWGLSWRLGERSDAVFAAVARL 255
Cdd:COG3455  170 GEPPAPLSPHWQGPDAARKRLRRRLPLWVLAAVAALVLLLLYLGLSYRLNSQTDPVLAQLNQL 232
type_VI_ompA TIGR03350
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, ...
 277-409 3.46e-68

type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274533 [Multi-domain]  Cd Length: 137  Bit Score: 212.55  E-value: 3.46e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890  277 FLQPEVRDRLVTVRDEVDRSVVVLRGDGLFESGAVAVRDRYAPVLARVAEALGQTRGDIVVRGYTDNVPIRTARFPSNWH 356
Cdd:TIGR03350   5 LLAPEIAAGLLTVDEDGDRSVVRLRGDELFASGSAEVRAEFEPLLLRIAKALAAVPGRITVVGHTDNVPIRTARFPSNWH 84

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 489904890  357 LSQARAEAVKAVIDARLGQAGRVRAEGRGEADPLAPNDTPAGRSVNRRVEITV 409
Cdd:TIGR03350  85 LSEARAKAVADVLAQAGGPAGRVRAEGRGDSEPIASNATAAGRARNRRVEIDV 137
DotU pfam09850
Type VI secretion system protein DotU; DotU is a family of Gram-negative bacterial proteins ...
 37-240 4.01e-63

Type VI secretion system protein DotU; DotU is a family of Gram-negative bacterial proteins that form part of the membrane-joining complex of the type VI secretion system. DotU binds tightly to IcmF and together they are tethered to the inner membrane at one end and the peptidoglycan layer at the other; they interact with Lip1 which then tethers the peptidoglycan layer to the outer membrane.


Pssm-ID: 430877 [Multi-domain]  Cd Length: 205  Bit Score: 202.14  E-value: 4.01e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890   37 PLVAAANPLLDLIPQIRATTAHPAPAMLREYLVDEVRQFELRAQQAGIPNETILGARYCLCTALDEAAALTPWGGGGVWS 116
Cdd:pfam09850   1 PLLDAASPLLLLVARLRQGARHPDAAALRERLVAELRAFEQEARAAGYSAEDIEAARYALCAFLDEAVLNTPWGGRSEWA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890  117 AHSLLVTFHNETWGGEKFFQLLAKLSQNPGQHLDLLELLYYCLLLGFEGRYRVIDNGRTQLETLRQRLLRILRGARGEYP 196
Cdd:pfam09850  81 RRPLQSRFFGETWGGEKFFDRLDRLLEDPAENLDLLELYYLCLSLGFEGRYRVEPDGEAELEALRQRLYQQIRRLRGEAP 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 489904890  197 RALSPHWRD-TPVQQALRRLPVPLWAYGALAAALALALFWGLSWR 240
Cdd:pfam09850 161 AALSPHWQPgVAAARRPLRRRVPLWVIAALAALLLLLLYLGLSYR 205
IcmH_DotU_IVB NF038228
type IVB secretion system protein IcmH/DotU;
34-221 1.48e-33

type IVB secretion system protein IcmH/DotU;


Pssm-ID: 439529 [Multi-domain]  Cd Length: 258  Bit Score: 126.44  E-value: 1.48e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890  34 GSNPLVAAANPLLDLIPQIRATTAHPAPAMLREYLVDEVRQFELRAQQAGIPNETILGARYCLCTALDEAAA---LTPWG 110
Cdd:NF038228  37 TTNPLVAAAGPLLSLLERLRVSPSLPNVPGIRENIEHELKAFHSKLRSLGYPEELIAIARYLLCATIDELLGksyLRLYG 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890 111 GGGVWSAHSLLVtfHNETWGGEKFFQLLAKLSQNPGQHLDLLELLYYCLLLGFEGRYRVIDNGRTQLETLRQRLLRILRG 190
Cdd:NF038228 117 EESEFKAFTPLS--HDETGPGERFFDILNRIKERPNQYLDLLELAYYCLILGFEGEYHEKADGRQVLDNLIEDLYQLIRQ 194

                        170       180       190
                 ....*....|....*....|....*....|.
gi 489904890 191 ARGEYPRALSpHWRDTPVQQALRRlpVPLWA 221
Cdd:NF038228 195 YRVNKSHRLF-KEQPNPKNTKKNY--KPLWA 222
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 305-409 4.65e-31

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 114.57  E-value: 4.65e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890 305 LFESGAVAVRDRYAPVLARVAEALGQTRG-DIVVRGYTDNVpirtARFPSNWHLSQARAEAVKAVIDARLGQAGRVRAEG 383
Cdd:cd07185    5 YFDFGSAELTPEAKPLLDKLAEVLKKNPDaKIRIEGHTDSR----GSDAYNQELSERRAEAVADYLVSKGVDASRITAVG 80

                         90       100
                 ....*....|....*....|....*.
gi 489904890 384 RGEADPLAPNDTPAGRSVNRRVEITV 409
Cdd:cd07185   81 YGESRPIASNDTEEGRAKNRRVEIVI 106
 
Name Accession Description Interval E-value
PRK07033 PRK07033
DotU family type VI secretion system protein;
24-415 0e+00

DotU family type VI secretion system protein;


Pssm-ID: 180801 [Multi-domain]  Cd Length: 427  Bit Score: 608.20  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890  24 RLRPHEYVISGSNPLVAAANPLLDLIPQIRATTAHPAPAMLREYLVDEVRQFELRAQQAGIPNETILGARYCLCTALDEA 103
Cdd:PRK07033  35 QPRPGRGAASGLNPLVAAANPLLNLIPQIRSTVHHPDPASLREQLLDEIRQFEERAQQAGVPYEVIIGARYCLCTALDEA 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890 104 AALTPWGGGGVWSAHSLLVTFHNETWGGEKFFQLLAKLSQNPGQHLDLLELLYYCLLLGFEGRYRVIDNGRTQLETLRQR 183
Cdd:PRK07033 115 AALTPWGGSGVWSSHSLLVTFHNETWGGEKFFQLLARLSQNPRQHLDLLELLYFCLALGFEGRYRVLDNGRSQLEALRQR 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890 184 LLRILRGARGEYPRALSPHWRDTPVQQALRRLPVPLWAYGALAAALALALFWGLSWRLGERSDAVFAAVARLKPPTVQIA 263
Cdd:PRK07033 195 LAQMIRSVRGEYAPALSPHWRDVPVARVLLRPTVPLWVCVALALLLALLLFIGLRWRLADRSDPVFAAIYALRLPVVQIA 274

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890 264 PAPRPAPAPRL-AVFLQPEVRDRLVTVRDEVDRSVVVLRGDGLFESGAVAVRDRYAPVLARVAEALGQTRGDIVVRGYTD 342
Cdd:PRK07033 275 RPAPQPPPAPRlAKFLEPEIRAGLVAVRDEADRSVVTLRGDGLFASASTSVRDRYQPVLARVADALNQVKGNVLVTGYSD 354

                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489904890 343 NVPIRTARFPSNWHLSQARAEAVKAVIDARLGQAGRVRAEGRGEADPLAPNDTPAGRSVNRRVEITVMVPPAP 415
Cdd:PRK07033 355 NVPIRTARFPSNWELSQARAQAVRALLAARLGQPERVTAEGRGDSDPVAPNDSAENRARNRRVEITLLVAPGS 427
PRK08126 PRK08126
hypothetical protein; Provisional
 31-409 8.72e-100

hypothetical protein; Provisional


Pssm-ID: 236157 [Multi-domain]  Cd Length: 432  Bit Score: 304.31  E-value: 8.72e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890  31 VISGSNPLVAAANPLLDLIPQIRATTAHPAPAMLREYLVDEVRQFELRAQQAGIPNETILGARYCLCTALDEAAALTPWG 110
Cdd:PRK08126  57 IRAAANPLLEAARPLLRALADMPATLDSAAVEQLRTLLVREVRLFQKLCEQANLRRDHMLGVRYCLCTALDEAANRTTWG 136

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890 111 GGGVWSAHSLLVTFHNETWGGEKFFQLLAKLSQNPGQHLDLLELLYYCLLLGFEGRYRVIDNGRTQLETLRQRLLRILRG 190
Cdd:PRK08126 137 RGGVWASRGLLTTFHGERDGGEKVFLLIGRLATDPQEHVDLLEVIYRILSLGFEGRYSVEADGRRKLEQIRQRLYTEITG 216

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890 191 ARGEYPRALSPHWRDTPVQQALRRLPVPLWAYGALAAALALALFWGLSWRLGERSDAV---FAAVARLKPPTvqiapapr 267
Cdd:PRK08126 217 RRDPVPPALSPHWQGAEPGRLRSFRDVPVWATAAVLSLILLGLFGWYKYRLLTRSADVqqrIAAIGRMTPPP-------- 288

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890 268 PAPAPRLAVFLQPEVRDRLVTVRDEVDRSVVVLRGDGLFESGAVAVRDRYAPVLARVAEALGQTRGDIVVRGYTDNVPIR 347
Cdd:PRK08126 289 APHRLRLKILLKNEIARGTLSVDEDARHSSVVFRGDAMFVPGQATVNPAMGPLIAKIAREIARVGGKVTVTGHTDNQPIR 368

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489904890 348 TARFPSNWHLSQARAEAVKAVIDARLGQAGRVRAEGRGEADPLAPNDTPAGRSVNRRVEITV 409
Cdd:PRK08126 369 SAQFASNLVLSEKRAAQVAQMLQSAGVPASRLEAVGKGDAQPVADNRTPQGRAQNRRVEITV 430
DotU COG3455
Type VI protein secretion system component TssL/VasF/DotU [Intracellular trafficking, ...
 33-255 2.10e-70

Type VI protein secretion system component TssL/VasF/DotU [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442678 [Multi-domain]  Cd Length: 233  Bit Score: 221.77  E-value: 2.10e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890  33 SGSNPLVAAANPLLDLIPQIRATTAHPAPAMLREYLVDEVRQFELRAQQAGIPNETILGARYCLCTALDEAAALTPWGGG 112
Cdd:COG3455   11 AGLNPLVDAASPLLLLVVRLRQGAEPPDPAALRQRLVEEIRRFERRLRAAGYSPEDIEAARYALCALLDEAVLNTPWGGR 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890 113 GVWSAHSLLVTFHNETWGGEKFFQLLAKLSQNPGQHLDLLELLYYCLLLGFEGRYRVIDnGRTQLETLRQRLLRILRGAR 192
Cdd:COG3455   91 SEWSRHPLQSTFFNETWGGEKFFELLERLLQEPAAHLDLLELYYLCLLLGFEGRYRVEG-GREELEALRRRLYQLIRRLR 169

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489904890 193 GEYPRALSPHWRDTPVQQALRRLPVPLWAYGALAAALALALFWGLSWRLGERSDAVFAAVARL 255
Cdd:COG3455  170 GEPPAPLSPHWQGPDAARKRLRRRLPLWVLAAVAALVLLLLYLGLSYRLNSQTDPVLAQLNQL 232
type_VI_ompA TIGR03350
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, ...
 277-409 3.46e-68

type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274533 [Multi-domain]  Cd Length: 137  Bit Score: 212.55  E-value: 3.46e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890  277 FLQPEVRDRLVTVRDEVDRSVVVLRGDGLFESGAVAVRDRYAPVLARVAEALGQTRGDIVVRGYTDNVPIRTARFPSNWH 356
Cdd:TIGR03350   5 LLAPEIAAGLLTVDEDGDRSVVRLRGDELFASGSAEVRAEFEPLLLRIAKALAAVPGRITVVGHTDNVPIRTARFPSNWH 84

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 489904890  357 LSQARAEAVKAVIDARLGQAGRVRAEGRGEADPLAPNDTPAGRSVNRRVEITV 409
Cdd:TIGR03350  85 LSEARAKAVADVLAQAGGPAGRVRAEGRGDSEPIASNATAAGRARNRRVEIDV 137
DotU pfam09850
Type VI secretion system protein DotU; DotU is a family of Gram-negative bacterial proteins ...
 37-240 4.01e-63

Type VI secretion system protein DotU; DotU is a family of Gram-negative bacterial proteins that form part of the membrane-joining complex of the type VI secretion system. DotU binds tightly to IcmF and together they are tethered to the inner membrane at one end and the peptidoglycan layer at the other; they interact with Lip1 which then tethers the peptidoglycan layer to the outer membrane.


Pssm-ID: 430877 [Multi-domain]  Cd Length: 205  Bit Score: 202.14  E-value: 4.01e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890   37 PLVAAANPLLDLIPQIRATTAHPAPAMLREYLVDEVRQFELRAQQAGIPNETILGARYCLCTALDEAAALTPWGGGGVWS 116
Cdd:pfam09850   1 PLLDAASPLLLLVARLRQGARHPDAAALRERLVAELRAFEQEARAAGYSAEDIEAARYALCAFLDEAVLNTPWGGRSEWA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890  117 AHSLLVTFHNETWGGEKFFQLLAKLSQNPGQHLDLLELLYYCLLLGFEGRYRVIDNGRTQLETLRQRLLRILRGARGEYP 196
Cdd:pfam09850  81 RRPLQSRFFGETWGGEKFFDRLDRLLEDPAENLDLLELYYLCLSLGFEGRYRVEPDGEAELEALRQRLYQQIRRLRGEAP 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 489904890  197 RALSPHWRD-TPVQQALRRLPVPLWAYGALAAALALALFWGLSWR 240
Cdd:pfam09850 161 AALSPHWQPgVAAARRPLRRRVPLWVIAALAALLLLLLYLGLSYR 205
IV_VI_DotU TIGR03349
type IV / VI secretion system protein, DotU family; At least two families of proteins, often ...
 48-223 5.07e-59

type IV / VI secretion system protein, DotU family; At least two families of proteins, often encoded by adjacent genes, show sequence similarity due to homology between type IV secretion systems and type VI secretion systems. One is the IcmF family (TIGR03348). The other is the family described by this model. Members include DotU from the Legionella pneumophila type IV secretion system. Many of the members of this protein family from type VI secretion systems have an additional C-terminal domain with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274532 [Multi-domain]  Cd Length: 183  Bit Score: 190.94  E-value: 5.07e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890   48 LIPQIRATTAHPAPAMLREYLVDEVRQFELRAQQAGIPNETILGARYCLCTALDEAAALTPWGGGGVWSAHSLLVTFHNE 127
Cdd:TIGR03349   1 LVTQLRATPAPPDVEALREQLVEELRLFERRLRAAGYSSEDIEAARYALCALLDEAVLNTPWGGRSVWSRQPLLSRFHNE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890  128 TWGGEKFFQLLAKLSQNPGQHLDLLELLYYCLLLGFEGRYRVIDNGRTQLETLRQRLLRILRGARGEYPRALSPHWRDTP 207
Cdd:TIGR03349  81 TWGGEKFFERLERLLADPAEHLDLLELYYLCLSLGFEGKYRVEEDGREQLEALRDRLYRLLRGARGPVPPALSPHWQGPA 160

                         170
                  ....*....|....*.
gi 489904890  208 VQQALRRLPVPLWAYG 223
Cdd:TIGR03349 161 AARRRLRRYVPLWVIL 176
MotB COG1360
Flagellar motor protein MotB [Cell motility];
278-414 6.63e-40

Flagellar motor protein MotB [Cell motility];


Pssm-ID: 440971 [Multi-domain]  Cd Length: 174  Bit Score: 140.75  E-value: 6.63e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890 278 LQPEVRDRLVTVRDEVDRSVVVLRGDGLFESGAVAVRDRYAPVLARVAEALGQTRGDIVVRGYTDNVPIRTARFPSNWHL 357
Cdd:COG1360   35 LEENLLSGQVEVRITEEGLVIEIQDRVLFDSGSAELTPEGRELLDKIAAVLAEVPNRIRVEGHTDNVPISTARFPSNWEL 114

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 489904890 358 SQARAEAV-KAVIDARLgQAGRVRAEGRGEADPLAPNDTPAGRSVNRRVEITVMVPPA 414
Cdd:COG1360  115 SAARAAAVvRYLIEGGV-PPERLSAVGYGDTRPLAPNDTPEGRARNRRVEIVILRRAA 171
IcmH_DotU_IVB NF038228
type IVB secretion system protein IcmH/DotU;
34-221 1.48e-33

type IVB secretion system protein IcmH/DotU;


Pssm-ID: 439529 [Multi-domain]  Cd Length: 258  Bit Score: 126.44  E-value: 1.48e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890  34 GSNPLVAAANPLLDLIPQIRATTAHPAPAMLREYLVDEVRQFELRAQQAGIPNETILGARYCLCTALDEAAA---LTPWG 110
Cdd:NF038228  37 TTNPLVAAAGPLLSLLERLRVSPSLPNVPGIRENIEHELKAFHSKLRSLGYPEELIAIARYLLCATIDELLGksyLRLYG 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890 111 GGGVWSAHSLLVtfHNETWGGEKFFQLLAKLSQNPGQHLDLLELLYYCLLLGFEGRYRVIDNGRTQLETLRQRLLRILRG 190
Cdd:NF038228 117 EESEFKAFTPLS--HDETGPGERFFDILNRIKERPNQYLDLLELAYYCLILGFEGEYHEKADGRQVLDNLIEDLYQLIRQ 194

                        170       180       190
                 ....*....|....*....|....*....|.
gi 489904890 191 ARGEYPRALSpHWRDTPVQQALRRlpVPLWA 221
Cdd:NF038228 195 YRVNKSHRLF-KEQPNPKNTKKNY--KPLWA 222
motB PRK08944
flagellar motor protein MotB; Reviewed
 278-410 6.81e-33

flagellar motor protein MotB; Reviewed


Pssm-ID: 236356 [Multi-domain]  Cd Length: 302  Bit Score: 125.89  E-value: 6.81e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890 278 LQPEVRDRLVTVRDEVDRSVVVLRGDGLFESGAVAVRDRYAPVLARVAEALGQTRGDIVVRGYTDNVPIRTARFPSNWHL 357
Cdd:PRK08944 155 LEKEIEDGAIEIESLGQQIIIRIREKGSFPSGSAFLQPKFKPVVRKIGELLKDVPGIITVSGHTDNVPISSELYRSNWDL 234

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 489904890 358 SQARAEAVKAVIDARLG-QAGRVRAEGRGEADPLAPNDTPAGRSVNRRVEITVM 410
Cdd:PRK08944 235 SSARAVAVAHELLKVKGfDPQRLKVVGMADTQPLVPNDTAENRARNRRVEIIIE 288
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 305-409 4.65e-31

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 114.57  E-value: 4.65e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890 305 LFESGAVAVRDRYAPVLARVAEALGQTRG-DIVVRGYTDNVpirtARFPSNWHLSQARAEAVKAVIDARLGQAGRVRAEG 383
Cdd:cd07185    5 YFDFGSAELTPEAKPLLDKLAEVLKKNPDaKIRIEGHTDSR----GSDAYNQELSERRAEAVADYLVSKGVDASRITAVG 80

                         90       100
                 ....*....|....*....|....*.
gi 489904890 384 RGEADPLAPNDTPAGRSVNRRVEITV 409
Cdd:cd07185   81 YGESRPIASNDTEEGRAKNRRVEIVI 106
PRK07034 PRK07034
hypothetical protein; Provisional
 26-407 1.69e-28

hypothetical protein; Provisional


Pssm-ID: 168775 [Multi-domain]  Cd Length: 536  Bit Score: 117.58  E-value: 1.69e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890  26 RPHEYVISGSNPLVAAANPLLDLIPQIRATTAHPApAMLREYLVDEVRQFELRAQQAGIPNETILGARYCLCTALDeaaa 105
Cdd:PRK07034 132 RPGMLLGAWDNAYIAAAMPLLLLVENIRSWPTRNA-AEVRPPIVRELQYFQQHLQKKNYPQEDINHLSYLLCTYID---- 206

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890 106 ltpwgggGVWSA--------HSLLVTFHNETWGGEKFFQLLAKLSQNPGQHLDLLELLYYCLLLGFEGRYRVIDNGRTQL 177
Cdd:PRK07034 207 -------GIFNGlqtpdsynQSLLVEFHRDAWGGEDCFEHLRVYMNSPKQYREVLEFYDLIMCLGFDGKYQMIEHGAVLL 279

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890 178 ETLRQRLLRILRGARGEYPRALSPHWRDTPVQQALRRLPVplWAYGALAAALAlalfWGLS-WRLGERSDAVFAAVARL- 255
Cdd:PRK07034 280 MDLRSRLHTQLYGQDATQSLAIAQAVKGSPRRQYIKALKI--FTYGFALCLCA----YGVTaWYLHQQSQQIRSNILTWv 353

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890 256 --KPPTVQIAPAPRPApaprlavfLQPEVRDRLVTVRDEVDRSVVVLRGDGLFESGAVAVRDRY--APVLARVAEALGQT 331
Cdd:PRK07034 354 lpEPRKINIMETLPNP--------LSNILNEGWLEVRKDPRGWLLIFTSDGAFRTGEATLSEEFinKKNIERLGLALAPW 425

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890 332 RGDIVVRGYTDNVPIRTARFPSNWHLSQARAEAV--KAVIDARLGQAGR--VRAEGRGEADPLAPNDTPAGRSVNRRVEI 407
Cdd:PRK07034 426 PGDIEVIGHTDNKPFRSTSGNNNLKLSAARASVVadKLRESTQINETHQreISAIGRGESDPLADNATEEGRKRNRRVDI 505
PRK09038 PRK09038
flagellar motor protein MotD; Reviewed
 278-409 4.11e-26

flagellar motor protein MotD; Reviewed


Pssm-ID: 181618 [Multi-domain]  Cd Length: 281  Bit Score: 106.63  E-value: 4.11e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890 278 LQPEVRDRLVTVRdEVDRSVVV-LRGDGLFESGAVAVRDRYAPVLARVAEALGQTRGDIVVRGYTDNVPIRTARFPSNWH 356
Cdd:PRK09038 109 LGPLIESGQVTVR-RNELWIEIeINSSLLFGSGDAMLSDQAFAILEKVAEVLKPAPNPIHVEGFTDNVPIATAQFPSNWE 187

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 489904890 357 LSQARAEAVkavidARL----G-QAGRVRAEGRGEADPLAPNDTPAGRSVNRRVEITV 409
Cdd:PRK09038 188 LSAARAASV-----VRLladdGvAPSRLAAVGYGEFQPVADNDTAEGRARNRRVVLVI 240
PRK06925 PRK06925
flagellar motor protein MotB;
281-412 1.06e-23

flagellar motor protein MotB;


Pssm-ID: 235887 [Multi-domain]  Cd Length: 230  Bit Score: 98.68  E-value: 1.06e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890 281 EVRDRLVTVRDEvdRSVV-VLRGDGLFESGAVAVRDRYAPVLARVAEALGQTRGDIVVRGYTDNVPIRTARFPSNWHLSQ 359
Cdd:PRK06925  98 ELKSVITAKRDE--RGVVlVLQEAVLFETGEADILKQAEPFLHKIGVLLSTIPNDIKVEGHTDSRPISTYRYPSNWELSA 175

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 489904890 360 ARAEAV-KAVIDARLGQAGRVRAEGRGEADPLAPNDTPAGRSVNRRVEITVMVP 412
Cdd:PRK06925 176 ARASSViRYFTSKEKLDSSRFIAVGYADTKPVVPNTTEENMQENRRVEIVISDP 229
motB PRK07734
flagellar motor protein MotB; Reviewed
 286-410 3.34e-23

flagellar motor protein MotB; Reviewed


Pssm-ID: 236080 [Multi-domain]  Cd Length: 259  Bit Score: 97.89  E-value: 3.34e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890 286 LVTVRDEVdrsvvvlrgdgLFESGAVAVRDRYAPVLARVAEAL--GQTRgDIVVRGYTDNVPIRTARFPSNWHLSQARA- 362
Cdd:PRK07734 137 LITILDNI-----------LFDSGKADVRLEDLPLAKEISNLLvsNPPR-NITISGHTDNVPIANAQFASNWELSVMRAv 204

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 489904890 363 EAVKAVIDARLGQAGRVRAEGRGEADPLAPNDTPAGRSVNRRVEITVM 410
Cdd:PRK07734 205 NFMQVLLENKELDPEKFSAKGYGEYKPIASNDTAEGRAKNRRVEVLIL 252
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 291-409 2.63e-20

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 90.61  E-value: 2.63e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890 291 DEVDRSVVVLRGDGLFESGAVAVRDRYAPVLARVAEALGQTRG-DIVVRGYTDNVPIRTArfpsNWHLSQARAEAVKAVI 369
Cdd:COG2885  176 LPAAVAEVVLLSNVYFDFDSAELTPEAKAALDELAALLKENPDlRIEIEGHTDSRGSDAY----NLALSERRAEAVKDYL 251

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 489904890 370 DARLGQAGRVRAEGRGEADPLAPNDTPAGRSVNRRVEITV 409
Cdd:COG2885  252 VSKGIPASRITAVGYGESRPVASNDTEEGRAKNRRVEIVV 291
PRK14693 PRK14693
hypothetical protein; Provisional
 33-413 1.08e-19

hypothetical protein; Provisional


Pssm-ID: 173156 [Multi-domain]  Cd Length: 552  Bit Score: 91.36  E-value: 1.08e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890  33 SGSNPLVAAANPLLdlIPQIRATTAHPA-PAMLREYLVDEVRQFELRAQQAGIPNETILGARYCLCTALDEAAALTPWGG 111
Cdd:PRK14693 113 SWNNPFVSHALPAV--LQLQRHLAAGPLnQAAIRTQLGLEVRLYRERLAASGCEWEQIRDASYLLCTYLDETVNDAAREH 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890 112 GGVW--SAHSLLVTFHNETWGGEKFFQLLAKLSQNPGQHLDLLELLYYCLLLGFEGRYRVIDNG-------RTQLETLR- 181
Cdd:PRK14693 191 AQVVydGERSLLVEFHDDAWGGEDAFADLSRWMKTEPPPIPLLSFYELILSLGWQGRYRVLDRGdvllqdlRSQLHALIw 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890 182 QRLLRILRGARGEYPRALSPHWRdTPVQQALRRLPVPLWAYGalaaalalalfwGLSWRLGERSDAVFAAVARLKPPTVQ 261
Cdd:PRK14693 271 HHVPPEPLGTELVAPAKRRRSWW-TAGRAAAVALGVLVLAYG------------AISFWLDSQGRPIRNALAAWMPPTRT 337

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890 262 IAPAPRPAPAprlavfLQPEVRDRLVTVRDEVDRSVVVLRGDGLFESGAVAVRDRYAPVLARVAEALGQTRGDIVVRGYT 341
Cdd:PRK14693 338 INIAETLPPP------LPQILTEGWLTAYKHPQGWLLVFKSDGAFDVGKANVRADFMHNIERLGLAFAPWPGDLEVIGHT 411

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890 342 DNVPIRTARFPSNWHLSQARAEAVKAVIDARLGQAG----------RVRAEGRGEADPLAPNDTPAGRSVNRRVEITVMV 411
Cdd:PRK14693 412 DSRPIRTSEFPDNQALSEARARNVADELRKTALPGGarapenavqrNIEYSGRGDAQPIDTAKTAAAYERNRRVDVLWKV 491


                 ..
gi 489904890 412 PP 413
Cdd:PRK14693 492 IP 493
PRK09039 PRK09039
peptidoglycan -binding protein;
289-407 9.07e-18

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 83.86  E-value: 9.07e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890 289 VRDEVDRsvVVLRGDGLFESGAVAVRDRYAPVLARVAEALGQTRGDI------VVR--GYTDNVPIR-TARFPSNWHLSQ 359
Cdd:PRK09039 213 IRIVGDR--FVFQSEVLFPTGSAELNPEGQAEIAKLAAALIELAKEIppeinwVLRvdGHTDNVPLSgTGRFRDNWELSS 290

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 489904890 360 ARAEAV-KAVIDarLG-QAGRVRAEGRGEADPLAPNDTPAGRSVNRRVEI 407
Cdd:PRK09039 291 ARAISVvKFLIA--LGvPADRLAAAGFGEFQPLDPGDTPEARARNRRIEL 338
PRK06742 PRK06742
flagellar motor protein MotS; Reviewed
 290-409 2.67e-16

flagellar motor protein MotS; Reviewed


Pssm-ID: 102525 [Multi-domain]  Cd Length: 225  Bit Score: 77.80  E-value: 2.67e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890 290 RDEVDRSVVVLrgDGL-FESGAVAVRDRYAPVLARVAEALGQTRGDIVVRGYTDNVPIRTARFPSNWHLSQAR-AEAVKA 367
Cdd:PRK06742 104 REDTGVSVVIV--DNLiFDTGDANVKPEAKEIISQLVGFFQSVPNPIVVEGHTDSRPIHNDKFPSNWELSSARaANMIHH 181

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 489904890 368 VIDARLGQAGRVRAEGRGEADPLAPNDTPAGRSVNRRVEITV 409
Cdd:PRK06742 182 LIEVYNVDDKRLAAVGYADTKPVVPNDSPQNWEKNRRVVIYI 223
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 306-402 1.13e-14

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 69.31  E-value: 1.13e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890  306 FESGAVAVRDRYAPVLARVAEAL--GQTRGDIVVRGYTDNVPIRtarfPSNWHLSQARAEAVKAVIDARLGQAGRVRAEG 383
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLkfPELKNTITIEGHTDTVGSA----AYNWELSQRRAEAVRRYLVNFGVPPSRISVVG 76

                          90
                  ....*....|....*....
gi 489904890  384 RGEADPLAPNDTPAGRSVN 402
Cdd:pfam00691  77 YGATKPITDNKTPEGRARN 95
motB PRK08457
flagellar motor protein MotB; Reviewed
 305-414 1.42e-14

flagellar motor protein MotB; Reviewed


Pssm-ID: 181435 [Multi-domain]  Cd Length: 257  Bit Score: 73.21  E-value: 1.42e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890 305 LFESGAVAVRDR----YAPVLARVAEALGQtRGDIVVRGYTDNVPIRTARFPSNWHLSQARAEAV-KAVIDARLGQAgRV 379
Cdd:PRK08457 125 LFENGSAEIINAdmmdYLKRIAKIITKLPK-QVKINVRGYTDNSPLNKSRYKDHYELAAARAYNVmKVLIQYGINPN-RL 202

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 489904890 380 RAEGRGEADPLAPNDTPAGRSVNRRVEITVMVPPA 414
Cdd:PRK08457 203 SFSSYGSNNPIAPNDSLENRLKNNRVEIFFKVDAN 237
motB PRK06667
flagellar motor protein MotB; Validated
 280-410 7.85e-13

flagellar motor protein MotB; Validated


Pssm-ID: 180652 [Multi-domain]  Cd Length: 252  Bit Score: 67.90  E-value: 7.85e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890 280 PEVRDRLVTVRDEvDRSVVV-LRGDGLFESGAVAVR-DRYAPVLARVAEALG--QTRGDIV-VRGYTDNVPIRTAR-FPS 353
Cdd:PRK06667 103 PEIQSNKVAVTED-ERGLVIsLASDAFFYPGSAEVKlEENRETLQKIASFIGflDLAGRNFrIEGHTDNVDVNPEGpWKS 181

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 489904890 354 NWHLSQARA-EAVKAVIDARLGQAGRVRAEGRGEADPLAPNDTPAGRSVNRRVEITVM 410
Cdd:PRK06667 182 NWELSGARAvNMLEYILNYGDQSESWFQVSGFAGSRPLATEDTPEGRAYNRRIDIVIL 239
PRK10510 PRK10510
OmpA family lipoprotein;
279-409 1.78e-12

OmpA family lipoprotein;


Pssm-ID: 182507 [Multi-domain]  Cd Length: 219  Bit Score: 66.44  E-value: 1.78e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890 279 QPEVRDRL----VTVRDEVDRSVVVLRGDGLFESGAVAVRDRYAPVLARVAEALGQ---TRGDIVvrGYTDNvpirTARF 351
Cdd:PRK10510  85 EAKLRDKMrgtgVSVTRSGDNIILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEypkTAVNVV--GYTDS----TGSH 158

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 489904890 352 PSNWHLSQARAEAVKAVIDARLGQAGRVRAEGRGEADPLAPNDTPAGRSVNRRVEITV 409
Cdd:PRK10510 159 DLNMRLSQQRADSVASALITQGVDASRIRTQGMGPANPIASNSTAEGKAQNRRVEITL 216
PRK09040 PRK09040
hypothetical protein; Provisional
 335-423 7.81e-11

hypothetical protein; Provisional


Pssm-ID: 181620 [Multi-domain]  Cd Length: 214  Bit Score: 61.57  E-value: 7.81e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890 335 IVVRGYTDNVPIR--TARFPSNWHLSQARAEAV-KAVIDARLgQAGRVRAEGRGEADPLAPNDTPAGRSVNRRVEITVmV 411
Cdd:PRK09040 125 LMVSGFTDDQPVRagNRRFADNWELSAQRALTVtRALIDAGV-PASSVFAAAFGSEQPVASNADDEGRAKNRRVEIAP-V 202

                         90
                 ....*....|..
gi 489904890 412 PPAPHARTPEEG 423
Cdd:PRK09040 203 PRPSASAGAARG 214
motB PRK05996
MotB family protein;
286-413 2.72e-09

MotB family protein;


Pssm-ID: 235665 [Multi-domain]  Cd Length: 423  Bit Score: 58.56  E-value: 2.72e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890 286 LVTVRDEVDrsvvvlrgDGLFESGAVAVRDRYAPVLARVAEALGQTRGDIVVRGYTDNVPIRTARFpSNWHLSQARAEA- 364
Cdd:PRK05996 306 LISLTDQVD--------YGMFAIGSAVPRAELVLAMEKIGQLLAERPGAVIIRGHTDARPFKSATY-DNWRLSTARAQSa 376

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 489904890 365 ----VKAVIDARlgqagRV-RAEGRGEADPLAPNDTPAgrSVNRRVEITVMVPP 413
Cdd:PRK05996 377 yymlVRGGLDEK-----RIeQVEGFADRRPKLPNDPNA--AANRRIEILIQSKQ 423
PRK10808 PRK10808
outer membrane protein A; Reviewed
 326-409 8.45e-05

outer membrane protein A; Reviewed


Pssm-ID: 236764 [Multi-domain]  Cd Length: 351  Bit Score: 44.30  E-value: 8.45e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890 326 EALGQTRGDIVVRGYTDnvpiRTARFPSNWHLSQARAEAVKAVIDARLGQAGRVRAEGRGEADPLAPN--DTPAGRSV-- 401
Cdd:PRK10808 251 SNLDPKDGSVVVLGYTD----RIGSDAYNQGLSEKRAQSVVDYLVSKGIPADKISARGMGKSNPVTGNtcDNVKPRAAli 326

                         90
                 ....*....|...
gi 489904890 402 -----NRRVEITV 409
Cdd:PRK10808 327 dclapDRRVEIEV 339
motB PRK12799
flagellar motor protein MotB; Reviewed
 305-416 2.30e-03

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 40.08  E-value: 2.30e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890 305 LFESGAVAVRDRYAPVLARVAEALGQTRGDIVVRGYTDNVPIRTA-RFPSNWHLSQARAEAV-KAVIDARLGQAGRVRAE 382
Cdd:PRK12799 159 MFKMGSAQVEPYMRDILRAIAPILNDIPNKLSLSGHTDDLPYARGeRGYSNWELSADRANASrRELLAGGLDEGKILRVV 238

                         90       100       110
                 ....*....|....*....|....*....|....
gi 489904890 383 GRgeADPLAPNDTPAGRSVNRRVEITVMVPPAPH 416
Cdd:PRK12799 239 GM--ASTMRLKEQASDDPVNRRISILVLNKQSQH 270
PRK06778 PRK06778
hypothetical protein; Validated
 305-414 3.31e-03

hypothetical protein; Validated


Pssm-ID: 235860 [Multi-domain]  Cd Length: 289  Bit Score: 39.14  E-value: 3.31e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489904890 305 LFESGAVAVRDRYAPVLARVAEALGQTRGDIVVRGYTDNVPIRTARFpSNWHLSQARA-EAVKAVIDARLGQAGRVRAEG 383
Cdd:PRK06778 155 MFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIY-NNWNLSGDRAlSARRVLEEAGMPEDKVMQVSA 233

                         90       100       110
                 ....*....|....*....|....*....|.
gi 489904890 384 RGEADPLAPNDTPAgrSVNRRVEITVMVPPA 414
Cdd:PRK06778 234 MADQMLLDAKNPQS--AGNRRIEIMVLTKSA 262
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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