|
Name |
Accession |
Description |
Interval |
E-value |
| SpoU |
COG0566 |
tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]; tRNA ... |
5-257 |
3.31e-67 |
|
tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]; tRNA G18 (ribose-2'-O)-methylase SpoU is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 440332 [Multi-domain] Cd Length: 265 Bit Score: 208.90 E-value: 3.31e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489913840 5 SSRDNPAVKALHKLAAGGGRRD-GRILLDGVHLCQAWLAHQGMPLQALFDVARLD-HPEIRALAGQ--VPPQHclaLDSR 80
Cdd:COG0566 2 TSPSNPRVKDLRKLRDKKYREEeGLFLAEGRHAVEEALKAGREIEELLVTEGALDrLAELLALAKAagIPVYE---VSRE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489913840 81 LLQGLASVESGQGVVFVARAPEPALPERIDEN------CVLFDRIQDPGNVGTLLRTCAAAGVRRVLLAAGTAAAWSPKV 154
Cdd:COG0566 79 VLDKLSGTETHQGVLAVVRPPEYADLEDLLAEagepplLLVLDGVQDPGNLGAILRSAAAFGVDGVILPKRRADPYNPKV 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489913840 155 LRSGQGAHFALHIHEHLDLEAVLPRL---DVPLVATTLERSGSLYDTDLPARCAWVFGHEGQGVAEALLRAAALRVHIPH 231
Cdd:COG0566 159 VRASAGALFHVPVARVTNLADALEELkeaGFWVVGTDLDGEASLYEVDLPGPVALVLGNEGKGLSRLVLEACDELVRIPM 238
|
250 260
....*....|....*....|....*.
gi 489913840 232 eSAAVESLNVGAAAAICLFEQRRQRR 257
Cdd:COG0566 239 -AGGVESLNVAVAAAILLYEAARQRR 263
|
|
| SpoU-like_rRNA-MTase |
cd18095 |
SAM-dependent rRNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes ... |
112-251 |
2.38e-52 |
|
SAM-dependent rRNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349968 Cd Length: 143 Bit Score: 166.83 E-value: 2.38e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489913840 112 NCVLFDRIQDPGNVGTLLRTCAAAGVRRVLLAAGTAAAWSPKVLRSGQGAHFALHIHEHLDLEAVLPRL---DVPLVATT 188
Cdd:cd18095 1 LVLVLDGVQDPGNLGTIIRTAAAFGVDGVILSKGTVDPYNPKVVRASMGALFRLPIIRVDDLEELLEELkeaGYKVVAAD 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489913840 189 LERSGSLYDTDLPARCAWVFGHEGQGVAEALLRAAALRVHIPHeSAAVESLNVGAAAAICLFE 251
Cdd:cd18095 81 LDGGSSLYDLDLPKPVALVLGNEGNGLSDELLELCDKRVTIPM-SGGVESLNVAVAAAILLYE 142
|
|
| SpoU_methylase |
pfam00588 |
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet. |
114-250 |
1.10e-33 |
|
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet.
Pssm-ID: 425768 Cd Length: 142 Bit Score: 118.79 E-value: 1.10e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489913840 114 VLFDRIQDPGNVGTLLRTCAAAGVRRVLLAA-GTAAAWSPKVLRSGQGAHFALHIHEHLDLEAVLPRLD---VPLVATTL 189
Cdd:pfam00588 4 VVLDNIQDPGNLGAIIRTAAAFGADGLILVEpRSADPYNPKAIRASAGALFHLPLVVVDNLEEALKDLKeagYAVVATSL 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489913840 190 ERSgSLYDTDLPARCAWVFGHEGQGVAEALLRAAALRVHIPhESAAVESLNVGAAAAICLF 250
Cdd:pfam00588 84 GGK-SLYEIDFPKKVALVFGNEGTGLSNEVLELCDRLVRIP-MSGDVESLNVAVAAAIALY 142
|
|
| rRNA_methyl_3 |
TIGR00186 |
rRNA methylase, putative, group 3; this is part of the trmH (spoU) family of rRNA methylases ... |
114-256 |
8.83e-17 |
|
rRNA methylase, putative, group 3; this is part of the trmH (spoU) family of rRNA methylases [Protein synthesis, tRNA and rRNA base modification]
Pssm-ID: 129290 [Multi-domain] Cd Length: 237 Bit Score: 77.00 E-value: 8.83e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489913840 114 VLFDRIQDPGNVGTLLRTCAAAGVRRVLLAAGTAAAWSPKVLRSGQGAHFalhiheHLDLEAV---------LPRLDVPL 184
Cdd:TIGR00186 93 LILDEITDPHNLGAILRTAEAFGVDGVILPKRRSAPLNSTVVKTSSGAVE------YVPLARVtnlsrtitkLKESGFWT 166
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489913840 185 VATTLERSGSLYDTDLPARCAWVFGHEGQGVAEALLRAAALRVHIPHeSAAVESLNVGAAAAICLFEQRRQR 256
Cdd:TIGR00186 167 VGTDLDAQDTLYQVKLTKPLALVVGNEGEGVSRLIKENCDFLIKIPM-AGKVDSLNVSVAAGILLFEIKRQR 237
|
|
| PRK10864 |
PRK10864 |
putative methyltransferase; Provisional |
93-255 |
1.29e-12 |
|
putative methyltransferase; Provisional
Pssm-ID: 236779 [Multi-domain] Cd Length: 346 Bit Score: 66.34 E-value: 1.29e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489913840 93 GVVFVARA-----PEPALPERIDENCVL-FDRIQDPGNVGTLLRTCAAAGVRRVLLaagTAAAwspkVLRSGQGAHFALH 166
Cdd:PRK10864 174 GVCFLIKKrngtdVQQWLAQAGAQDCVLaLEDVGNPHNLGGIMRSCAHFGVKGVVV---QDAA----LLESGAAIRTAEG 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489913840 167 IHEH---LDLEAVLPRLDV------PLVATTLERSGSLYDTDLPARCAWVFGHEGQGVAEALLRAAALRVHIPHeSAAVE 237
Cdd:PRK10864 247 GAEHvqpITGDSFVDVLDDfrqagyTIVTTSSHKGTPLFKASLPAKMVLVLGQEYDGLSDAARQQGDLSVSIDG-TGNVE 325
|
170
....*....|....*...
gi 489913840 238 SLNVGAAAAICLFEQRRQ 255
Cdd:PRK10864 326 SLNVSVATGVLLAEWWRQ 343
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| SpoU |
COG0566 |
tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]; tRNA ... |
5-257 |
3.31e-67 |
|
tRNA G18 (ribose-2'-O)-methylase SpoU [Translation, ribosomal structure and biogenesis]; tRNA G18 (ribose-2'-O)-methylase SpoU is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 440332 [Multi-domain] Cd Length: 265 Bit Score: 208.90 E-value: 3.31e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489913840 5 SSRDNPAVKALHKLAAGGGRRD-GRILLDGVHLCQAWLAHQGMPLQALFDVARLD-HPEIRALAGQ--VPPQHclaLDSR 80
Cdd:COG0566 2 TSPSNPRVKDLRKLRDKKYREEeGLFLAEGRHAVEEALKAGREIEELLVTEGALDrLAELLALAKAagIPVYE---VSRE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489913840 81 LLQGLASVESGQGVVFVARAPEPALPERIDEN------CVLFDRIQDPGNVGTLLRTCAAAGVRRVLLAAGTAAAWSPKV 154
Cdd:COG0566 79 VLDKLSGTETHQGVLAVVRPPEYADLEDLLAEagepplLLVLDGVQDPGNLGAILRSAAAFGVDGVILPKRRADPYNPKV 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489913840 155 LRSGQGAHFALHIHEHLDLEAVLPRL---DVPLVATTLERSGSLYDTDLPARCAWVFGHEGQGVAEALLRAAALRVHIPH 231
Cdd:COG0566 159 VRASAGALFHVPVARVTNLADALEELkeaGFWVVGTDLDGEASLYEVDLPGPVALVLGNEGKGLSRLVLEACDELVRIPM 238
|
250 260
....*....|....*....|....*.
gi 489913840 232 eSAAVESLNVGAAAAICLFEQRRQRR 257
Cdd:COG0566 239 -AGGVESLNVAVAAAILLYEAARQRR 263
|
|
| SpoU-like_rRNA-MTase |
cd18095 |
SAM-dependent rRNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes ... |
112-251 |
2.38e-52 |
|
SAM-dependent rRNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349968 Cd Length: 143 Bit Score: 166.83 E-value: 2.38e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489913840 112 NCVLFDRIQDPGNVGTLLRTCAAAGVRRVLLAAGTAAAWSPKVLRSGQGAHFALHIHEHLDLEAVLPRL---DVPLVATT 188
Cdd:cd18095 1 LVLVLDGVQDPGNLGTIIRTAAAFGVDGVILSKGTVDPYNPKVVRASMGALFRLPIIRVDDLEELLEELkeaGYKVVAAD 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489913840 189 LERSGSLYDTDLPARCAWVFGHEGQGVAEALLRAAALRVHIPHeSAAVESLNVGAAAAICLFE 251
Cdd:cd18095 81 LDGGSSLYDLDLPKPVALVLGNEGNGLSDELLELCDKRVTIPM-SGGVESLNVAVAAAILLYE 142
|
|
| SpoU-like_RNA-MTase |
cd18109 |
SAM-dependent RNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes ... |
112-251 |
4.74e-36 |
|
SAM-dependent RNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349982 Cd Length: 141 Bit Score: 124.96 E-value: 4.74e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489913840 112 NCVLFDRIQDPGNVGTLLRTCAAAGVRRVLLAAGTAAAWSPKVLRSGQGAHFALHIHEhLDLEAVLPRL--DVPLVATTL 189
Cdd:cd18109 1 LTLALDGIQDPGNLGTIIRTADWFGIRQIICSPDTVDPYNPKVVQASMGSIFRVQIHY-TDLPALLAELkkAFPVYGADL 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489913840 190 ERSgSLYDTDLPARCAWVFGHEGQGVAEALLRAAALRVHIPHESAAVESLNVGAAAAICLFE 251
Cdd:cd18109 80 DGE-NLYEFTLPEKGILVMGNEGHGISPEVLKLLTHRLTIPRYGKGAESLNVAVATAILLSE 140
|
|
| SpoU_methylase |
pfam00588 |
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet. |
114-250 |
1.10e-33 |
|
SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet.
Pssm-ID: 425768 Cd Length: 142 Bit Score: 118.79 E-value: 1.10e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489913840 114 VLFDRIQDPGNVGTLLRTCAAAGVRRVLLAA-GTAAAWSPKVLRSGQGAHFALHIHEHLDLEAVLPRLD---VPLVATTL 189
Cdd:pfam00588 4 VVLDNIQDPGNLGAIIRTAAAFGADGLILVEpRSADPYNPKAIRASAGALFHLPLVVVDNLEEALKDLKeagYAVVATSL 83
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489913840 190 ERSgSLYDTDLPARCAWVFGHEGQGVAEALLRAAALRVHIPhESAAVESLNVGAAAAICLF 250
Cdd:pfam00588 84 GGK-SLYEIDFPKKVALVFGNEGTGLSNEVLELCDRLVRIP-MSGDVESLNVAVAAAIALY 142
|
|
| SpoU-like_RNMTL1 |
cd18106 |
SAM-dependent rRNA methylase related to RNMTL1; RNMTL1 (also known as HC90, MRM3 and RMTL1) ... |
114-251 |
2.73e-29 |
|
SAM-dependent rRNA methylase related to RNMTL1; RNMTL1 (also known as HC90, MRM3 and RMTL1) catalyzes the methylation of 2'-O-ribose residues G1370 to GmG residue of the mitochondrial 16S rRNA. RNMTL1 is a member of the SPOUT (SpoU-TrmD) methyltransferase (MTase) superfamily, a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349979 Cd Length: 148 Bit Score: 107.72 E-value: 2.73e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489913840 114 VLFDRIQDPGNVGTLLRTCAAAGVRRVLLAAGTAAAWSPKVLRSGQGAHFALHIHEHLDLEAV---LPRLDVPLVATTLE 190
Cdd:cd18106 3 VICDNIRDPGNLGSILRSAAAAGCSKVLLTKGCVDPWEPKVLRAGAGAHFRLPIYGNLSWDDIpnyLPDDSKVFLADNNL 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489913840 191 RSGSLYDTDLP-ARCAWVFGHEGQGVAEALLRAAALR----VHIPHEsAAVESLNVGAAAAICLFE 251
Cdd:cd18106 83 PVQPYDSIDYCsGPIVLVIGGETHGVSPEAYKLAHSTggsrVHIPLA-NGVDSLNSAVAASILLFE 147
|
|
| SpoU-like_family |
cd18082 |
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase ... |
114-251 |
1.60e-27 |
|
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349955 Cd Length: 145 Bit Score: 103.07 E-value: 1.60e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489913840 114 VLFDRIQDPGNVGTLLRTCAAAGVRRVLLAAGTAAAWSPKVLRSGQGAHFALHIHEHLDLEAV---LPRLDVPLVATTLE 190
Cdd:cd18082 2 LVLDNIRSPGNIGSIFRTADAFGVEKIYLVGPTADIFDPKAKRTSRGTHFSVPYERVDNFEEYlksLKEEGYPLIGLELT 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489913840 191 RSG-SLYDTDL--PARCAWVFGHEGQGVAEALLRAAALRVHIPHeSAAVESLNVGAAAAICLFE 251
Cdd:cd18082 82 DGSiPLSEFKFkkPKKIALIFGNERSGLSPELLALCDYTVHIPM-SGKNSSLNVSVATGIALYE 144
|
|
| SpoU-like_RNA-MTase |
cd18104 |
SAM-dependent RNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes ... |
117-256 |
3.66e-27 |
|
SAM-dependent RNA methylase related to SpoU-TrmH; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349977 Cd Length: 146 Bit Score: 102.27 E-value: 3.66e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489913840 117 DRIQDPGNVGTLLRTCAAAGVRRVLLAAGTAAAWSPKVLRSGQGAHFALHIHE--HLDLEAVLPRLDVPLVATTLERSGS 194
Cdd:cd18104 6 EGLEKPGNLGAILRSADAAGADAVILCDPKTDLFNPNVIRASLGAVFTLPVAEasSEETLAWLKENKIRILATTPKAEKL 85
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489913840 195 LYDTDLPARCAWVFGHEGQGVAEALLRAAALRVHIPHeSAAVESLNVGAAAAICLFEQRRQR 256
Cdd:cd18104 86 YYEADLRGPIAIVVGSESEGLSEFWLKAADERVRIPM-AGQADSLNVSVAAAILLYEALRQR 146
|
|
| SpoU-like_RlmB |
cd18103 |
SAM-dependent rRNA methylase related to RlmB; 23S rRNA-M2G2251-MTase RlmB catalyzes the ... |
114-251 |
1.26e-24 |
|
SAM-dependent rRNA methylase related to RlmB; 23S rRNA-M2G2251-MTase RlmB catalyzes the methylation of guanosine 2251, a modification conserved in the peptidyltransferase domain of 23S rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349976 Cd Length: 143 Bit Score: 95.53 E-value: 1.26e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489913840 114 VLFDRIQDPGNVGTLLRTCAAAGVRRVLLAAGTAAAWSPKVLRSGQGAHFALHIHEHLDLEAVLPRL---DVPLVATTLE 190
Cdd:cd18103 3 LILDGITDPHNLGAIIRSAEAFGVDGVIIPKRRSAPLTPTVAKASAGALEHLPIARVTNLARALEELkeaGFWIYGADGE 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489913840 191 RSGSLYDTDLPARCAWVFGHEGQGVAEALLRAAALRVHIPHeSAAVESLNVGAAAAICLFE 251
Cdd:cd18103 83 AEKSLYDVDLTGPLALVLGSEGKGLRRLVLKNCDFLVKIPM-AGKVDSLNVSVAAGIILYE 142
|
|
| SpoU-like_TrmH |
cd18092 |
SAM-dependent tRNA methylase related to TrmH; TrmH catalyzes the transfer of the methyl group ... |
102-256 |
1.93e-20 |
|
SAM-dependent tRNA methylase related to TrmH; TrmH catalyzes the transfer of the methyl group from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of the ribose of the universally conserved guanosine 18 (G18) position in tRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349965 Cd Length: 162 Bit Score: 84.83 E-value: 1.93e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489913840 102 EPALPERIDENCVLFDRIQDPGNVGTLLRTCAAAGVRRV-LLAAGTAAAWSPKVLRsgqGAHFALHIHEHLDLEAVLPRL 180
Cdd:cd18092 7 EEVLARRTRDLTVVLENVHDPHNASAVLRTCDAFGVQDVhVIEPKNKFKKNRGVAM---GADKWLDVHRHDSTEECLAAL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489913840 181 ---DVPLVATTL-ERSGSLYDTDLPARCAWVFGHEGQGVAEALLRAAALRVHIPHeSAAVESLNVGAAAAICLFEQRRQR 256
Cdd:cd18092 84 keqGYRIVATSLsPDAVPLDELDYTRPTALVFGNEKDGVSEEALAAADERVYIPM-YGFVESLNVSVAAAIILYELQRQR 162
|
|
| SpoU-like |
cd18097 |
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase ... |
113-251 |
2.93e-17 |
|
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349970 Cd Length: 144 Bit Score: 76.06 E-value: 2.93e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489913840 113 CVLFDRIQDPGNVGTLLRTCAAAGVRRVLLAAGTAAAWSPKVLRSGQGAHFALHIHEHLDLEAVLPRL---DVPLVAT-T 188
Cdd:cd18097 2 VVVLDNLRSAHNVGSIFRTADAAGVEKIYLCGYTPTPPHPKVAKTALGAEESVPWEHFEDTLEAVRALkarGYTIIALeT 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489913840 189 LERSGSLYDTDLPARCAWVFGHEGQGVAEALLRAAALRVHIPhESAAVESLNVGAAAAICLFE 251
Cdd:cd18097 82 TENSVPLHEARLPRPLALVLGNEVRGVSPEVLALCDAVVEIP-MFGRKNSLNVAVAAAVALYE 143
|
|
| SpoU-like_AviRb |
cd18107 |
SAM-dependent rRNA methylase related to AviRb; AviRb from Streptomyces viridochromogenes ... |
114-251 |
3.29e-17 |
|
SAM-dependent rRNA methylase related to AviRb; AviRb from Streptomyces viridochromogenes methylates the 2'-O atom of U2479 of the 23S ribosomal RNA. AviRb is a member of the SPOUT (SpoU-TrmD) methyltransferase (MTase) superfamily, a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349980 Cd Length: 148 Bit Score: 75.89 E-value: 3.29e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489913840 114 VLFDRIQDPGNVGTLLRTCAAAGVRRVLLAAGTAAAWSPKVLRSGQGAHFAL---HIHEHLDLEAVLPRL-----DVPLV 185
Cdd:cd18107 3 VLFDRPTSPGNLGTIIRSADALGAHGLVVTGHAADVYDPKTIRASTGSLFSLpivRVPSNRELEDWVEARkargtPLQLV 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489913840 186 ATTLERSGSLYDTDLPARCAWVFGHEGQGVAEALLRAAALRVHIPHESAAvESLNVGAAAAICLFE 251
Cdd:cd18107 83 GTDEHGDHQIADHDFTRPTLLLIGNETAGLSAAWRELCDETVSIPMAGSA-SSLNAACAASIFLYE 147
|
|
| rRNA_methyl_3 |
TIGR00186 |
rRNA methylase, putative, group 3; this is part of the trmH (spoU) family of rRNA methylases ... |
114-256 |
8.83e-17 |
|
rRNA methylase, putative, group 3; this is part of the trmH (spoU) family of rRNA methylases [Protein synthesis, tRNA and rRNA base modification]
Pssm-ID: 129290 [Multi-domain] Cd Length: 237 Bit Score: 77.00 E-value: 8.83e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489913840 114 VLFDRIQDPGNVGTLLRTCAAAGVRRVLLAAGTAAAWSPKVLRSGQGAHFalhiheHLDLEAV---------LPRLDVPL 184
Cdd:TIGR00186 93 LILDEITDPHNLGAILRTAEAFGVDGVILPKRRSAPLNSTVVKTSSGAVE------YVPLARVtnlsrtitkLKESGFWT 166
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489913840 185 VATTLERSGSLYDTDLPARCAWVFGHEGQGVAEALLRAAALRVHIPHeSAAVESLNVGAAAAICLFEQRRQR 256
Cdd:TIGR00186 167 VGTDLDAQDTLYQVKLTKPLALVVGNEGEGVSRLIKENCDFLIKIPM-AGKVDSLNVSVAAGILLFEIKRQR 237
|
|
| SpoU-like |
cd18096 |
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase ... |
114-251 |
1.60e-15 |
|
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349969 Cd Length: 140 Bit Score: 71.09 E-value: 1.60e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489913840 114 VLFDRIQDPGNVGTLLRTCAAAGVRRVLLAAgtAAAWSPkvlRSGQGA--HFALHIHEHL-DLEAVLPRLDVPLVATTL- 189
Cdd:cd18096 3 LVLHNVAKRHNIGTIVRSANAFGVKEVHLVG--RRKFNP---FGAMGTdrHVKFRHFDTLaEAKEYLKERGIRLVGVEIv 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489913840 190 ERSGSLYDTDLPARCAWVFGHEGQGVAEALLRAAALRVHIPHESAAVESLNVGAAAAICLFE 251
Cdd:cd18096 78 PGAEPIETHPFPGDTAFVLGNEGTGLSDEQLAICDGFVYIPQYGSGTASLNVSVAASIVLHH 139
|
|
| SpoU-like_MRM1 |
cd18105 |
SAM-dependent rRNA methylase related to MRM1; MRM1 catalyzes the methylation of 2'-O-ribose ... |
114-247 |
2.07e-14 |
|
SAM-dependent rRNA methylase related to MRM1; MRM1 catalyzes the methylation of 2'-O-ribose residues G1145 to GmG residue of the mitochondrial 16S rRNA. MRM1 is a member of the SPOUT (SpoU-TrmD) methyltransferase (MTase) superfamily, a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349978 Cd Length: 158 Bit Score: 68.70 E-value: 2.07e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489913840 114 VLFDRIQDPGNVGTLLRTCAAAGVRRVLLAAGTAAAWSPKVLRSGQGAHFALHIHEHLDLE---------------AVLP 178
Cdd:cd18105 3 LLLDEITDPQNLGAILRSAYFLGVDGVVVSSKNSAPLSPVVSKASAGALELMPIYSVDNLAsflksskengwkvvgTSAP 82
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489913840 179 RLDVPLVATTleRSGSLYDTDLPARCAWVFGHEGQGVAEALLRAAALRVHIP----HESAAVESLNVGAAAAI 247
Cdd:cd18105 83 PSASSDKKTI--PANELSELLLEKPTILVLGNEGRGLRTNIKNLCDYLVSIPggrsAENPGVDSLNVSVAAGI 153
|
|
| PRK10864 |
PRK10864 |
putative methyltransferase; Provisional |
93-255 |
1.29e-12 |
|
putative methyltransferase; Provisional
Pssm-ID: 236779 [Multi-domain] Cd Length: 346 Bit Score: 66.34 E-value: 1.29e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489913840 93 GVVFVARA-----PEPALPERIDENCVL-FDRIQDPGNVGTLLRTCAAAGVRRVLLaagTAAAwspkVLRSGQGAHFALH 166
Cdd:PRK10864 174 GVCFLIKKrngtdVQQWLAQAGAQDCVLaLEDVGNPHNLGGIMRSCAHFGVKGVVV---QDAA----LLESGAAIRTAEG 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489913840 167 IHEH---LDLEAVLPRLDV------PLVATTLERSGSLYDTDLPARCAWVFGHEGQGVAEALLRAAALRVHIPHeSAAVE 237
Cdd:PRK10864 247 GAEHvqpITGDSFVDVLDDfrqagyTIVTTSSHKGTPLFKASLPAKMVLVLGQEYDGLSDAARQQGDLSVSIDG-TGNVE 325
|
170
....*....|....*...
gi 489913840 238 SLNVGAAAAICLFEQRRQ 255
Cdd:PRK10864 326 SLNVSVATGVLLAEWWRQ 343
|
|
| PRK11181 |
PRK11181 |
23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB; |
117-256 |
1.45e-10 |
|
23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB;
Pssm-ID: 183021 [Multi-domain] Cd Length: 244 Bit Score: 59.60 E-value: 1.45e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489913840 117 DRIQDPGNVGTLLRTCAAAGVRRVLLAAGTAAAWSPKVLRSGQGAHfalhihEHLDLEAV---------LPRLDVPLVAT 187
Cdd:PRK11181 101 DGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAA------ETVPLIRVtnlartmrmLQEKNIWIVGT 174
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489913840 188 TLERSGSLYDTDLPARCAWVFGHEGQGVAEALLRAAALRVHIPHeSAAVESLNVGAAAAICLFEQRRQR 256
Cdd:PRK11181 175 AGEADHTLYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPM-AGSVSSLNVSVATGICLFEAVRQR 242
|
|
| SpoU-like_TRM3-like |
cd18091 |
SAM-dependent tRNA methylase related to TRM3; Yeast tRNA (guanosine(18)-2'-O) ... |
119-251 |
2.60e-08 |
|
SAM-dependent tRNA methylase related to TRM3; Yeast tRNA (guanosine(18)-2'-O)-methyltransferase TRM3 catalyzes the formation of 2'-O-methylguanosine at position 18 (Gm18) in various tRNAs. TRM3 is similar to C-terminal domain of TAR (HIV-1) RNA binding protein 1 (TARBP1), a protein binding to TAR, which functions as a RNA regulatory signal by forming a stable stem-loop structure to which transactivator protein Tat binds. The role of TARBP1 is believed to be to disengage RNA polymerase II from TAR during transcriptional elongation. TRM3 and the C-terminal methyltransferase domain of TARBP1 are members of the SPOUT methyltransferase superfamily.
Pssm-ID: 349964 Cd Length: 145 Bit Score: 51.38 E-value: 2.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489913840 119 IQDPGNVGTLLRTCAAAGVRRVLLAagtaaawSPKVLRSGQGAHFALHIHEHLDLEAVlPRLDVP------------LVA 186
Cdd:cd18091 8 IDKPPNLGGLCRTCEIFGVSKLVLP-------NLAVVEDKQFKALSVSAEKWLPIEEV-KPEDLLpylkekkqegytIVG 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489913840 187 ttLE---RSGSLYDTDLPARCAWVFGHEGQGVAEALLRAAALRVHIPHEsAAVESLNVGAAAAICLFE 251
Cdd:cd18091 80 --LEqtaNSVSLHDFQFPKKTVLVLGNEKEGIPAELLSLLDVCVEIPQL-GVIRSLNVHVSGAIAIYE 144
|
|
| SpoU-like_NHR |
cd18108 |
Nosiheptide-resistance methyltransferase (NHR); Nosiheptide-resistance methyltransferase (NHR) ... |
114-252 |
4.51e-08 |
|
Nosiheptide-resistance methyltransferase (NHR); Nosiheptide-resistance methyltransferase (NHR) confers resistance to the thiazole antibiotic nosiheptide via catalyzing 2'O-methylation of 23S rRNA at the nucleotide A1067. NHR is a member of the SPOUT (SpoU-TrmD) methyltransferase (MTase) superfamily, a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349981 Cd Length: 144 Bit Score: 50.94 E-value: 4.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489913840 114 VLFDRIQDPGNVGTLLRTCA---AAGVrrVLLAAGTAAAWSPKVLRSGQGAHFALHI--HEHLDLEAVLPRLDVPLVatT 188
Cdd:cd18108 3 VVLDGVRIVGNIGAIVRTSLalgAAGI--VLVDSDLATVADRRLLRASRGYVFSLPVvlADREEAVAFLRDNDIPLM--T 78
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489913840 189 LERSGSLYDTDL---PARCAWVFGHEGQGVAEALLRAAALRVHIPHeSAAVESLNVGAAAAICLFEQ 252
Cdd:cd18108 79 LDADGDVPVKELgdrPDRLALVFGSEKGGPSGLFEEAAAGTVSIPM-SSSTESLNVSVSAGIALHER 144
|
|
| TrmL |
COG0219 |
tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain [Translation, ... |
122-255 |
1.13e-07 |
|
tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain [Translation, ribosomal structure and biogenesis]; tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 439989 Cd Length: 153 Bit Score: 50.03 E-value: 1.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489913840 122 PGNVGTLLRTCAAAGVRrVLLAAGTAAAWSPKVL-RSGQGAHFALHIHEHLDLEAVLPRL-DVPLVATTLERSGSLYDTD 199
Cdd:COG0219 12 PQNTGNIIRLCAATGAR-LHLIEPLGFSLDDKKLkRAGLDYWELVDLTVHDSWEAFLEALpGGRLFLFTTKGTKPYTDVD 90
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 489913840 200 LPARCAWVFGHEGQGV-AEALLRAAALRVHIPHeSAAVESLNVGAAAAICLFEQRRQ 255
Cdd:COG0219 91 YQPGDVLLFGRETAGLpEEVLAAPADQRLRIPM-RPGVRSLNLSNAVAIVLYEALRQ 146
|
|
| SpoU-like_TrmL |
cd18094 |
SAM-dependent tRNA methylase related to TrmL; tRNA (Um34/Cm34) methyltransferase TrmL ... |
112-255 |
1.32e-07 |
|
SAM-dependent tRNA methylase related to TrmL; tRNA (Um34/Cm34) methyltransferase TrmL catalyzes the methyl transfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH at position 34 in both tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349967 Cd Length: 145 Bit Score: 49.37 E-value: 1.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489913840 112 NCVLFD-RIqdPGNVGTLLRTCAAAGVRRVLLaaGTAA-AWSPKVL-RSGQGAHFALHIHEHLDLEAVLPRL-DVPLVAT 187
Cdd:cd18094 1 NIVLYEpEI--PQNTGNIARTCAATGARLHLI--EPLGfSLDDKRLkRAGLDYWDHVDLTVHDSWEAFLEALpPGRLFLF 76
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489913840 188 TLERSGSLYDTDLPARCAWVFGHEGQGV-AEALLRAAALRVHIPHeSAAVESLNVGAAAAICLFEQRRQ 255
Cdd:cd18094 77 TTKGTKPYTDFDFKPGDYLVFGRESTGLpEEILDAFPDRRLRIPM-RPKVRSLNLSNSVAIVLYEALRQ 144
|
|
| PRK11081 |
PRK11081 |
tRNA guanosine-2'-O-methyltransferase; Provisional |
114-257 |
1.29e-05 |
|
tRNA guanosine-2'-O-methyltransferase; Provisional
Pssm-ID: 236837 [Multi-domain] Cd Length: 229 Bit Score: 44.98 E-value: 1.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489913840 114 VLFDRIQDPGNVGTLLRTCAAAGVRRVllaagtAAAWSPKVLR------SGQGAHFALHIHEHL-DLEAVLPRLDVPLVA 186
Cdd:PRK11081 22 VCMEQVHKPHNVSAIIRTADAVGVHEV------HAVWPGSRMRtmgstaAGSNSWVQVKTHRTIgDAVAHLKGQGMQILA 95
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489913840 187 TTL-ERSGSLYDTDLPARCAWVFGHEGQGVAEALLRAAALRVHIPHeSAAVESLNVGAAAAICLFEQRRQRR 257
Cdd:PRK11081 96 THLsDTAVDFREIDYTRPTCILMGQEKTGISQEALALADQDIIIPM-IGMVQSLNVSVASALILYEAQRQRQ 166
|
|
| SpoU-like |
cd18098 |
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase ... |
118-250 |
7.25e-04 |
|
SAM-dependent rRNA or tRNA methylase related to SpoU; RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.
Pssm-ID: 349971 Cd Length: 138 Bit Score: 38.78 E-value: 7.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489913840 118 RIQDPGNVGTLLRTCA---AAGV-------RRVLLAAGTAAAWspkvlrsgqgAHFAL-HIHEHLDLEAVLPRlDVPLVA 186
Cdd:cd18098 7 NPKTPKNVGTLWRAAGclgASFVftigaryKRRKQSTDTSKAW----------RHIPLfHYDDLEDLAEPLPF-GAVLVA 75
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489913840 187 TTL-ERSGSLYDTDLPARCAWVFGHEGQGVAEALLRAAALRVHIPHESaaveSLNVGAAAAICLF 250
Cdd:cd18098 76 VELtEGATPLPDFKHPDRAVYLLGPEDGGLPQEVLARCHHVVYLPTRG----SLNVAVAGSIVLY 136
|
|
| |
