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Conserved domains on  [gi|489914869|ref|WP_003818272|]
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ABC transporter permease [Bordetella bronchiseptica]

Protein Classification

ABC transporter permease( domain architecture ID 11427312)

ABC transporter permease similar to ABC oligopeptide transporter permease proteins (OppB, AppB, and AmiC), the transmembrane subunits (TM) found in periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporters which generally bind type 2 PBPs

Gene Ontology:  GO:0055085
PubMed:  18535149|17723295
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 1-321 2.90e-126

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


:

Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 363.62  E-value: 2.90e-126
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869   1 MLATIIRRLLQTVVVMLVMSALVFAGIYMV-GDPVSMLASPEATEAQRTAIRVSLGLDQPLWKQYLIFMGQAVRGDFGNS 79
Cdd:COG0601    1 MLRYILRRLLQAIPVLLGVSTLVFLLLRLLpGDPAAALLGPRATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDLGTS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869  80 FLTGEPAMRLILERMPATLELACVAMLLSVLIGVPLGIRAGLKPKAPASRVIMTGSVLGFSLPNFWVGLMLIMIFAVTLG 159
Cdd:COG0601   81 FVYGRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAVKLG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869 160 WLPASGRGqtvsvaglSLSVLTLDGWASLILPAATIALAKCAMIIRVTRAATRESLPQDYIKFARAKGLPEKRVLGVHLL 239
Cdd:COG0601  161 WLPVSGRV--------SPWEDFLDALRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHAL 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869 240 KNILIPIVTVAGLEFGQVVAFAVVTETVFSWPGMGKLLIDSIINLDRPVVVAYLLLIVFFLVMLNLVVDIIYTVLDPRVR 319
Cdd:COG0601  233 RNALIPVVTVLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRIR 312


                 ..
gi 489914869 320 LD 321
Cdd:COG0601  313 LG 314
 
Name Accession Description Interval E-value
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 1-321 2.90e-126

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 363.62  E-value: 2.90e-126
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869   1 MLATIIRRLLQTVVVMLVMSALVFAGIYMV-GDPVSMLASPEATEAQRTAIRVSLGLDQPLWKQYLIFMGQAVRGDFGNS 79
Cdd:COG0601    1 MLRYILRRLLQAIPVLLGVSTLVFLLLRLLpGDPAAALLGPRATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDLGTS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869  80 FLTGEPAMRLILERMPATLELACVAMLLSVLIGVPLGIRAGLKPKAPASRVIMTGSVLGFSLPNFWVGLMLIMIFAVTLG 159
Cdd:COG0601   81 FVYGRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAVKLG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869 160 WLPASGRGqtvsvaglSLSVLTLDGWASLILPAATIALAKCAMIIRVTRAATRESLPQDYIKFARAKGLPEKRVLGVHLL 239
Cdd:COG0601  161 WLPVSGRV--------SPWEDFLDALRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHAL 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869 240 KNILIPIVTVAGLEFGQVVAFAVVTETVFSWPGMGKLLIDSIINLDRPVVVAYLLLIVFFLVMLNLVVDIIYTVLDPRVR 319
Cdd:COG0601  233 RNALIPVVTVLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRIR 312


                 ..
gi 489914869 320 LD 321
Cdd:COG0601  313 LG 314
PRK10352 PRK10352
nickel transporter permease NikB; Provisional
 1-320 8.23e-76

nickel transporter permease NikB; Provisional


Pssm-ID: 182400 [Multi-domain]  Cd Length: 314  Bit Score: 234.98  E-value: 8.23e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869   1 MLATIIRRLLQTVVVMLVMSALVFAGIYM-VGDPVS---MLASPEATEAQRTAIRVSLGLDQPLWKQYLIFMGQAVRGDF 76
Cdd:PRK10352   1 MLRYILRRLLLLIPMLLAASVIIFLMLRLgTGDPALdylRLSNLPPTPEMLASTRTMLGLDQPLYVQYGTWLWKALHLDF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869  77 GNSFLTGEPAMRLILERMPATLELACVAMLLSVLIGVPLGIRAGLKPKAPASRVIMTGSVLGFSLPNFWVGLMLIMIFAV 156
Cdd:PRK10352  81 GISFATQRPVLDDLLNFLPATLELAGAALVLILLTSVPLGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869 157 TLGWLPASGRGqtvsvaglslsvltldGWASLILPAATIALAKCAMIIRVTRAATRESLPQDYIKFARAKGLPEKRVLGV 236
Cdd:PRK10352 161 YLQWLPAMGYG----------------GWQHIILPAVSIAFMSLAINARLLRASMLEVAGQRHVTWARLRGLSERQVERR 224

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869 237 HLLKNILIPIVTVAGLEFGQVVAFAVVTETVFSWPGMGKLLIDSIINLDRPVVVAYLLLIVFFLVMLNLVVDIIYTVLDP 316
Cdd:PRK10352 225 HILRNASLPMITAVGMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVIQCFTLMMVVVFVVCNLIVDLLNAALDP 304


                 ....
gi 489914869 317 RVRL 320
Cdd:PRK10352 305 RIRR 308
nickel_nikB TIGR02789
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of ...
 1-319 4.98e-72

nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 131836 [Multi-domain]  Cd Length: 314  Bit Score: 225.41  E-value: 4.98e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869    1 MLATIIRRLLQTVVVMLVMSALVFAGIYMV-GDPVSM---LASPEATEAQRTAIRVSLGLDQPLWKQYLIFMGQAVRGDF 76
Cdd:TIGR02789   1 MLNYILRRLLLLIPVVLAASLLAFILIHLGpSDPAEDylrLSHIPPTDEAIADMRHSLGLDQPLYVQYFHWLWNALHLDF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869   77 GNSFLTGEPAMRLILERMPATLELACVAMLLSVLIGVPLGIRAGLKPKAPASRVIMTGSVLGFSLPNFWVGLMLIMIFAV 156
Cdd:TIGR02789  81 GISYISDRPVLDEIARSLPATLELAGFALVIVVLVSVPLGILAARYRDRLPDHAVRFIIFLGVSIPNFWLAFLLVWGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869  157 TLGWLPASGRGqtvsvaglslsvltldGWASLILPAATIALAKCAMIIRVTRAATRESLPQDYIKFARAKGLPEKRVLGV 236
Cdd:TIGR02789 161 YLNLLPTNGAG----------------TWQHLVLPAVTLALMSVSIYARLLRASMLDNMQERYVTYARVRGIKERWVIRR 224

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869  237 HLLKNILIPIVTVAGLEFGQVVAFAVVTETVFSWPGMGKLLIDSIINLDRPVVVAYLLLIVFFLVMLNLVVDIIYTVLDP 316
Cdd:TIGR02789 225 HILRNAILPMITALGMHIGELLGGTFVIENIFSWPGVGRYAISAIFNRDYPVIQCYTLLMGLLFVFCNLIVDLFQALLDP 304


                  ...
gi 489914869  317 RVR 319
Cdd:TIGR02789 305 RIR 307
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 112-319 2.09e-24

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 97.75  E-value: 2.09e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869  112 GVPLGIRAGLKPKAPASRVIMTGSVLGFSLPNFWVGLMLIMIFavtlgwlpasgrgqtvsvaglslsvlTLDGWASLILP 191
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIA--------------------------ILSILGHGILP 54

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869  192 AATIALAKCAMIIRVTRAATRESLPQDYIKFARAKGLPEKRVLGVHLLKNILIPIVTVAGLEFGQVVAFAVVTETVFSWP 271
Cdd:pfam00528  55 AIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWP 134

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 489914869  272 GMGKLLIDSIINLDRPVVVAYLLLIVFFLVMLNLVVDIIYTVLDPRVR 319
Cdd:pfam00528 135 GLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDPRVR 182
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 94-301 1.95e-14

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 70.39  E-value: 1.95e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869  94 MPATLELACVAMLLSVLIGVPLGIRAGLKPKaPASRVIMTGSVLGFSLPNFWVGLMLIMIFAVTLGWlpasgrgqtvsva 173
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRG-KLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGW------------- 66

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869 174 glslsvltlDGWASLILPAATIALAKCAMIIRVTRAATRESLPQDYIKFARAKGLPEKRVLGVHLLKNILIPIVTVAGLE 253
Cdd:cd06261   67 ---------GILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLA 137

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 489914869 254 FGQVVAFAVVTETVFS----WPGMGKLLIDSIINLDRPVVVAYLLLIVFFLV 301
Cdd:cd06261  138 FARALGEFALVSFLGGgeapGPGTGLLLIFAILFPGDLGVAAAVALILLLLS 189
 
Name Accession Description Interval E-value
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 1-321 2.90e-126

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 363.62  E-value: 2.90e-126
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869   1 MLATIIRRLLQTVVVMLVMSALVFAGIYMV-GDPVSMLASPEATEAQRTAIRVSLGLDQPLWKQYLIFMGQAVRGDFGNS 79
Cdd:COG0601    1 MLRYILRRLLQAIPVLLGVSTLVFLLLRLLpGDPAAALLGPRATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDLGTS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869  80 FLTGEPAMRLILERMPATLELACVAMLLSVLIGVPLGIRAGLKPKAPASRVIMTGSVLGFSLPNFWVGLMLIMIFAVTLG 159
Cdd:COG0601   81 FVYGRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAVKLG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869 160 WLPASGRGqtvsvaglSLSVLTLDGWASLILPAATIALAKCAMIIRVTRAATRESLPQDYIKFARAKGLPEKRVLGVHLL 239
Cdd:COG0601  161 WLPVSGRV--------SPWEDFLDALRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHAL 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869 240 KNILIPIVTVAGLEFGQVVAFAVVTETVFSWPGMGKLLIDSIINLDRPVVVAYLLLIVFFLVMLNLVVDIIYTVLDPRVR 319
Cdd:COG0601  233 RNALIPVVTVLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRIR 312


                 ..
gi 489914869 320 LD 321
Cdd:COG0601  313 LG 314
PRK10352 PRK10352
nickel transporter permease NikB; Provisional
 1-320 8.23e-76

nickel transporter permease NikB; Provisional


Pssm-ID: 182400 [Multi-domain]  Cd Length: 314  Bit Score: 234.98  E-value: 8.23e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869   1 MLATIIRRLLQTVVVMLVMSALVFAGIYM-VGDPVS---MLASPEATEAQRTAIRVSLGLDQPLWKQYLIFMGQAVRGDF 76
Cdd:PRK10352   1 MLRYILRRLLLLIPMLLAASVIIFLMLRLgTGDPALdylRLSNLPPTPEMLASTRTMLGLDQPLYVQYGTWLWKALHLDF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869  77 GNSFLTGEPAMRLILERMPATLELACVAMLLSVLIGVPLGIRAGLKPKAPASRVIMTGSVLGFSLPNFWVGLMLIMIFAV 156
Cdd:PRK10352  81 GISFATQRPVLDDLLNFLPATLELAGAALVLILLTSVPLGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869 157 TLGWLPASGRGqtvsvaglslsvltldGWASLILPAATIALAKCAMIIRVTRAATRESLPQDYIKFARAKGLPEKRVLGV 236
Cdd:PRK10352 161 YLQWLPAMGYG----------------GWQHIILPAVSIAFMSLAINARLLRASMLEVAGQRHVTWARLRGLSERQVERR 224

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869 237 HLLKNILIPIVTVAGLEFGQVVAFAVVTETVFSWPGMGKLLIDSIINLDRPVVVAYLLLIVFFLVMLNLVVDIIYTVLDP 316
Cdd:PRK10352 225 HILRNASLPMITAVGMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVIQCFTLMMVVVFVVCNLIVDLLNAALDP 304


                 ....
gi 489914869 317 RVRL 320
Cdd:PRK10352 305 RIRR 308
nickel_nikB TIGR02789
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of ...
 1-319 4.98e-72

nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 131836 [Multi-domain]  Cd Length: 314  Bit Score: 225.41  E-value: 4.98e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869    1 MLATIIRRLLQTVVVMLVMSALVFAGIYMV-GDPVSM---LASPEATEAQRTAIRVSLGLDQPLWKQYLIFMGQAVRGDF 76
Cdd:TIGR02789   1 MLNYILRRLLLLIPVVLAASLLAFILIHLGpSDPAEDylrLSHIPPTDEAIADMRHSLGLDQPLYVQYFHWLWNALHLDF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869   77 GNSFLTGEPAMRLILERMPATLELACVAMLLSVLIGVPLGIRAGLKPKAPASRVIMTGSVLGFSLPNFWVGLMLIMIFAV 156
Cdd:TIGR02789  81 GISYISDRPVLDEIARSLPATLELAGFALVIVVLVSVPLGILAARYRDRLPDHAVRFIIFLGVSIPNFWLAFLLVWGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869  157 TLGWLPASGRGqtvsvaglslsvltldGWASLILPAATIALAKCAMIIRVTRAATRESLPQDYIKFARAKGLPEKRVLGV 236
Cdd:TIGR02789 161 YLNLLPTNGAG----------------TWQHLVLPAVTLALMSVSIYARLLRASMLDNMQERYVTYARVRGIKERWVIRR 224

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869  237 HLLKNILIPIVTVAGLEFGQVVAFAVVTETVFSWPGMGKLLIDSIINLDRPVVVAYLLLIVFFLVMLNLVVDIIYTVLDP 316
Cdd:TIGR02789 225 HILRNAILPMITALGMHIGELLGGTFVIENIFSWPGVGRYAISAIFNRDYPVIQCYTLLMGLLFVFCNLIVDLFQALLDP 304


                  ...
gi 489914869  317 RVR 319
Cdd:TIGR02789 305 RIR 307
SapB COG4168
ABC-type antimicrobial peptide export system, permease component SapB [Defense mechanisms];
1-319 3.68e-71

ABC-type antimicrobial peptide export system, permease component SapB [Defense mechanisms];


Pssm-ID: 443329 [Multi-domain]  Cd Length: 321  Bit Score: 223.56  E-value: 3.68e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869   1 MLATIIRRLLQTVVVMLVMSALVFAGIYMvgDPVSMLAspeateaqrtairvslglDQPLWKQYLIFMGQAVRGDFGNSF 80
Cdd:COG4168    1 MLIYLLRRLNLLLITLLILSLISFSLLYR--DPLNPLS------------------DASLFSGYLFYLQNLLQGDFGISS 60

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869  81 LTGEPAMRLILERMPATLELACVAMLLSVLIGVPLGIRAGLKPKAPASRVIMTGSVLGFSLPNFWVGLMLIMIFAVTLGW 160
Cdd:COG4168   61 INGEPILEQLLTVFPATLELCFLAFLLALLIGIPLGILAGIYRGKWLDKLISSLSLLGFSIPVFWLALLLILFFSLNLGW 140

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869 161 LPASGR----GQTVSVAGLSLsvltLDGWAS---------------LILPAATIALAKCAMIIRVTRAATRESLPQDYIK 221
Cdd:COG4168  141 LPVSGRynllYEIPPVTGFAL----IDAWLSdspyrlkaiqsalqhLILPTLVLAVAPTTEVIRLTRQSTEEVMNQNYIK 216

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869 222 FARAKGLPEKRVLGVHLLKNILIPIVTVAGLEFGQVVAFAVVTETVFSWPGMGKLLIDSIINLDRPVVVAYLLLIVFFLV 301
Cdd:COG4168  217 AAATRGLSRFTIIRRHVLRNALPPIIPQLGLQFSTMLTLAMITEVVFSWPGIGRWLINAIRQQDYAAISAGVIVIGTFVI 296

                        330
                 ....*....|....*...
gi 489914869 302 MLNLVVDIIYTVLDPRVR 319
Cdd:COG4168  297 IVNILSDILGALLNPLKR 314
PRK15081 PRK15081
glutathione ABC transporter permease GsiC; Provisional
 1-319 8.63e-71

glutathione ABC transporter permease GsiC; Provisional


Pssm-ID: 185039 [Multi-domain]  Cd Length: 306  Bit Score: 221.90  E-value: 8.63e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869   1 MLATIIRRLLQTVVVMLVMSALVFAGIYMV-GDPVSMLASPEATEAQRTAIRVSLGLDQPLWKQYLIFMGQAVRGDFGNS 79
Cdd:PRK15081   1 MLNYVIKRLLGLIPTLLIVAVLVFLFVHLLpGDPARLAAGPEADAQVVALVRQQLGLDQPLPHQFWHYISNALQGDFGTS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869  80 FLTGEPAMRLILERMPATLELACVAMLLSVLIGVPLGIRAGLKPKAPASRVIMTGSVLGFSLPNFWVGLMLIMIFAVTLG 159
Cdd:PRK15081  81 MVSRRPVSEEIASRFMPTLWLTITSMVWAVIFGMAIGIASAVWRNRWPDRLGMTLAVSGISFPAFALGMLLMQVFSVELG 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869 160 WLPASGRgqtvsvaglslsvltlDGWASLILPAATIALAKCAMIIRVTRAATRESLPQDYIKFARAKGLPEKRVLGVHLL 239
Cdd:PRK15081 161 WLPTVGA----------------DSWQHYILPSLTLGAAVAAVMARFTRASFVEVLSEDYMRTARAKGVSETWVVLKHGL 224

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869 240 KNILIPIVTVAGLEFGQVVAFAVVTETVFSWPGMGKLLIDSIINLDRPVVVAYLLLIVFFLVMLNLVVDIIYTVLDPRVR 319
Cdd:PRK15081 225 RNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEVLLFSLEFILINLVVDVLYAAINPAIR 304
PRK10914 PRK10914
dipeptide ABC transporter permease DppB;
1-319 9.80e-65

dipeptide ABC transporter permease DppB;


Pssm-ID: 182834 [Multi-domain]  Cd Length: 339  Bit Score: 207.74  E-value: 9.80e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869   1 MLATIIRRLLQTVVVMLVMSALVFAGIYMV-GDPVSMLASPEATEAQRTA-IRVSLGLDQPLWKQYLIFMGQAVRGDFGN 78
Cdd:PRK10914   1 MLQFILRRLGLVIPTFIGITLLTFAFVHMIpGDPVMIMAGERGISPERHAqLLAELGLDKPMWQQYLHYIWGVMHGDLGI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869  79 SFLTGEPAMRLILERMPATLELACVAMLLSVLIGVPLGIRAGLKPKAPASRVIMTGSVLGFSLPNFWVGLMLIMIFAVTL 158
Cdd:PRK10914  81 SLKSRIPVWDEFVPRFKATLELGVCAMIFAVAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHW 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869 159 GWLPASGR-GQTV------SVAGLSLsVLTL---------DGWASLILPAATIALAKCAMIIRVTRAATRESLPQDYIKF 222
Cdd:PRK10914 161 NLTPVSGRvSDMVflddsnPLTGFML-IDTAiwgedgnfiDAVAHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRT 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869 223 ARAKGLPEKRVLGVHLLKNILIPIVTVAGLEFGQVVAFAVVTETVFSWPGMGKLLIDSIINLDRPVVVAYLLLIVFFLVM 302
Cdd:PRK10914 240 ARAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIIL 319

                        330
                 ....*....|....*..
gi 489914869 303 LNLVVDIIYTVLDPRVR 319
Cdd:PRK10914 320 VNLLVDLLYGVVNPRIR 336
oppB PRK09471
oligopeptide ABC transporter permease OppB;
1-319 1.46e-49

oligopeptide ABC transporter permease OppB;


Pssm-ID: 181886 [Multi-domain]  Cd Length: 306  Bit Score: 167.17  E-value: 1.46e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869   1 MLATIIRRLLQTVVVMLVMSALVFagIYMVGDPVSMLASPEATEAQRTA-IRVSLGLDQPLWKQYLIFMGQAVRGDFGNS 79
Cdd:PRK09471   1 MLKFILRRCLEAIPTLFILITISF--FMMRLAPGSPFTGERTLPPEVMAnIEAKYHLNDPIMTQYFSYLKQLAHGDFGPS 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869  80 FLTGEPAMR-LILERMPATLELACVAMLLSVLIGVPLGIRAGLKPKAPASRVIMTGSVLGFSLPNFWVGLMLIMIFAVTL 158
Cdd:PRK09471  79 FKYKDYSVNdLVASSFPVSAKLGAAAFFLAVILGVSAGVIAALKQNTKWDYTVMGFAMTGVVIPSFVVAPLLVLIFAITL 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869 159 GWLPASGRGQtvsvaglslsvltlDGWASLILPAATIALAKCAMIIRVTRAATRESLPQDYIKFARAKGLPEKRVLGVHL 238
Cdd:PRK09471 159 HWLPGGGWNG--------------GALKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIILRHA 224

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869 239 LKNILIPIVTVAGLEFGQVVAFAVVTETVFSWPGMGKLLIDSIINLDRPVVVAYLLLIVFFLVMLNLVVDIIYTVLDPRV 318
Cdd:PRK09471 225 LKPALLPVLSYMGPAFVGIITGSMVIETIFGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVIDPKI 304


                 .
gi 489914869 319 R 319
Cdd:PRK09471 305 R 305
PRK15110 PRK15110
peptide ABC transporter permease SapB;
60-316 2.52e-47

peptide ABC transporter permease SapB;


Pssm-ID: 185065 [Multi-domain]  Cd Length: 321  Bit Score: 161.78  E-value: 2.52e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869  60 LWKQYLIFMGQAVRGDFGNSFLTGEPAMRLILERMPATLELACVAMLLSVLIGVPLGIRAGLKPKAPASRVIMTGSVLGF 139
Cdd:PRK15110  40 LWDAWVFWFNGLLHWDFGVSSINGQPISEQLKEVFPATMELCILAFGFALLVGIPVGIIAGVTRHKWQDNLISALALLGF 119

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869 140 SLPNFWVGLMLIMIFAVTLGWLPASGR----GQTVSVAGLSLsvltLDGWAS---------------LILPAATIALAKC 200
Cdd:PRK15110 120 SIPVFWLALLLTLFFSLTLGWLPVSGRfdllYEVKPVTGFAL----IDAWLSdspwrdemimsairhMILPVITLAVAPT 195

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869 201 AMIIRVTRAATRESLPQDYIKFARAKGLPEKRVLGVHLLKNILIPIVTVAGLEFGQVVAFAVVTETVFSWPGMGKLLIDS 280
Cdd:PRK15110 196 TEVIRLMRISTIEVYDQNYVKAAATRGLSRFTILRRHVLHNALPPVIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLINA 275

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 489914869 281 IINLDRPVVVAYLLLIVFFLVMLNLVVDIIYTVLDP 316
Cdd:PRK15110 276 IRQQDYAAISAGVMVVGSLVIIVNVLSDILGAMANP 311
YejB COG4174
ABC-type microcin C transport system, permease component YejB [Secondary metabolites ...
 49-324 7.01e-35

ABC-type microcin C transport system, permease component YejB [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 443333 [Multi-domain]  Cd Length: 363  Bit Score: 129.92  E-value: 7.01e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869  49 AIRVSLGLDQPLWKQYLIFMGQAVRGDFGNSFLTGEPAMRLILERMPATLELACVAMLLSVLIGVPLGIRAGLKPKAPAS 128
Cdd:COG4174   85 ELEKQYGFDKPAHERFLLMLKNYLRFDFGESYFRDISVIDLILEKLPVSISLGLWSTLLTYLISIPLGIRKAVRDGSRFD 164

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869 129 RVIMTGSVLGFSLPNFWVGLMLIMIFA--VTLGWLPASGrgqtvsvaglslsvLTLDGWASLILPAAT------IALAKC 200
Cdd:COG4174  165 VWTSTVIIVGYAIPGFLFAILLIVLFAggSYFDWFPLRG--------------LTSDNWDQLSWWGKIldylwhLTLPVT 230

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869 201 AMIIR-------VTRAATRESLPQDYIKFARAKGLPEKRVLGVHLLKNILIPIvtVAGLEFGQVVAF---AVVTETVFSW 270
Cdd:COG4174  231 AMVIGgfatltlLTKNSFLDEIRKQYVLTARAKGLSERRVLYGHVFRNAMLIV--IAGFPAAFIGAFftgSLLIETIFSL 308

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 489914869 271 PGMGKLLIDSIINLDRPVVVAYLLLIVFFLVMLNLVVDIIYTVLDPRVRLDSRQ 324
Cdd:COG4174  309 DGLGLLGFEAVVNRDYPVVFGTLYIFTLIGLVLKLISDLTYVLVDPRIDFEARE 362
PRK15133 PRK15133
microcin C ABC transporter permease YejB; Provisional
 55-323 3.89e-29

microcin C ABC transporter permease YejB; Provisional


Pssm-ID: 185087 [Multi-domain]  Cd Length: 364  Bit Score: 114.46  E-value: 3.89e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869  55 GLDQPLWKQYLIFMGQAVRGDFGNSFLTGEPAMRLILERMPATLELACVAMLLSVLIGVPLGIRAGLKPKAPASRVIMTG 134
Cdd:PRK15133  94 GFDKPLHERYFKMLWDYIRFDFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAVRNGSRFDVWSSAF 173

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869 135 SVLGFSLPNFWVGLMLIMIFA--VTLGWLPASGrgqTVSVAGLSLSVLT--LDGWASLILPAATIALAKCAMIIRVTRAA 210
Cdd:PRK15133 174 IIIGYAIPAFLFAILLIVFFAggSYFDLFPLRG---LVSANFDSLPWYQkiTDYLWHITLPVLATVIGGFAALTMLTKNS 250

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869 211 TRESLPQDYIKFARAKGLPEKRVLGVHLLKNILipIVTVAGLEFGQVVAF---AVVTETVFSWPGMGKLLIDSIINLDRP 287
Cdd:PRK15133 251 FLDEIRKQYVVTARAKGVSEKNILWKHVFRNAM--LLVIAGFPATFISMFftgSLLIEVMFSLNGLGLLGYEATVSRDYP 328

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 489914869 288 VVVAYLLLIVFFLVMLNLVVDIIYTVLDPRVRLDSR 323
Cdd:PRK15133 329 VMFGTLYIFTLIGLLLNIVSDISYTLVDPRIDFEGR 364
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 112-319 2.09e-24

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 97.75  E-value: 2.09e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869  112 GVPLGIRAGLKPKAPASRVIMTGSVLGFSLPNFWVGLMLIMIFavtlgwlpasgrgqtvsvaglslsvlTLDGWASLILP 191
Cdd:pfam00528   1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIA--------------------------ILSILGHGILP 54

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869  192 AATIALAKCAMIIRVTRAATRESLPQDYIKFARAKGLPEKRVLGVHLLKNILIPIVTVAGLEFGQVVAFAVVTETVFSWP 271
Cdd:pfam00528  55 AIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWP 134

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 489914869  272 GMGKLLIDSIINLDRPVVVAYLLLIVFFLVMLNLVVDIIYTVLDPRVR 319
Cdd:pfam00528 135 GLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDPRVR 182
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 94-301 1.95e-14

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 70.39  E-value: 1.95e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869  94 MPATLELACVAMLLSVLIGVPLGIRAGLKPKaPASRVIMTGSVLGFSLPNFWVGLMLIMIFAVTLGWlpasgrgqtvsva 173
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRG-KLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGW------------- 66

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869 174 glslsvltlDGWASLILPAATIALAKCAMIIRVTRAATRESLPQDYIKFARAKGLPEKRVLGVHLLKNILIPIVTVAGLE 253
Cdd:cd06261   67 ---------GILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLA 137

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 489914869 254 FGQVVAFAVVTETVFS----WPGMGKLLIDSIINLDRPVVVAYLLLIVFFLV 301
Cdd:cd06261  138 FARALGEFALVSFLGGgeapGPGTGLLLIFAILFPGDLGVAAAVALILLLLS 189
BPD_transp_1_N pfam19300
Binding-prot-dependent transport system membrane comp, N-term; This is the N-terminal ...
 1-101 2.02e-13

Binding-prot-dependent transport system membrane comp, N-term; This is the N-terminal transmembrane domain of the Binding-protein-dependent transport system inner membrane component.


Pssm-ID: 437132 [Multi-domain]  Cd Length: 114  Bit Score: 65.71  E-value: 2.02e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869    1 MLATIIRRLLQTVVVMLVMSALVFAGIYMV-GDPVSMLASPEATEAQRTAIRVSLGLDQPLWKQYLIFMGQAVRGD---- 75
Cdd:pfam19300   1 MLRFLVRRTLGAVVILLIISAVTFFLFYAIpRDPARLACGKNCTPETLALIRHNLGLDKPIPVQYWHFLSGIFAGRdfga 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 489914869   76 --------FGNSFLTGEPAMRLILERMPATLELA 101
Cdd:pfam19300  81 vghcpapcLGYSFANNEPVWDTIMDRFPTTLSLA 114
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 97-274 1.28e-07

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 52.04  E-value: 1.28e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869  97 TLELACVAMLLSVLIGVPLGIRAGLKPKApASRVIMTGSVLGFSLPnfwvGLMLIMIFAVTLGwlpasgrgQTVSVAGLS 176
Cdd:COG1173   81 SLLVGLLAVLIALVIGVLLGLLAGYFGGW-VDAVLMRLVDVLLAFP----SLLLAIALVAVLG--------PGLLNVILA 147

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869 177 LSVLtldGWASlilpaatialakcamIIRVTRAATRESLPQDYIKFARAKGLPEKRVLGVHLLKNILIPIVTVAGLEFgq 256
Cdd:COG1173  148 LGLT---GWPG---------------YARLVRAQVLSLREREYVEAARALGASPLRIIFRHILPNVLPPLIVQATLGI-- 207

                        170
                 ....*....|....*...
gi 489914869 257 vvAFAVVTETVFSWPGMG 274
Cdd:COG1173  208 --ASAILAEAGLSFLGLG 223
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 96-310 1.55e-03

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 39.36  E-value: 1.55e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869  96 ATLELACVAMLLSVLIGVPLGIRAGLKPkaPASRVIMTGSVLGFSLPnfWVGLMLIMIFAVTLGWLPAsgrgqtvsvagl 175
Cdd:COG0600   65 ASLLRVLLGFALAALLGVPLGLLLGLSR--LLRRLLDPLLVFLRPIP--PLALAPLLILWFGIGEASK------------ 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869 176 slsvltldgwaslilpAATIALAKCAMIIRVTRAATReSLPQDYIKFARAKGLPEKRVLGVHLLKNILIPIVTVAGLEFG 255
Cdd:COG0600  129 ----------------IFVIFLGAFFPILLNTAAGVR-SVDPELLELARSLGASRWQILRKVVLPAALPYIFTGLRIALG 191

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 489914869 256 QVVAFAVVTETVFSWPGMGKLLIDSIINLDRPVVVAYLLLIVFFLVMLNLVVDII 310
Cdd:COG0600  192 LAWIGLVVAELLGASSGLGYLILDARQLLDTDLVFAAILVIGLLGLLLDLLLRLL 246
PRK10913 PRK10913
dipeptide ABC transporter permease DppC;
97-254 8.55e-03

dipeptide ABC transporter permease DppC;


Pssm-ID: 182833 [Multi-domain]  Cd Length: 300  Bit Score: 37.45  E-value: 8.55e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489914869  97 TLELACVAMLLSVLIGVPLGIRAGLKpKAPASRVIMTGSVLGFSLPNFWVGLMLIMIFavtlgwlpasgrGQTVSVAGLS 176
Cdd:PRK10913 101 SLLVGCLVVVLSLVMGVILGLIAGYF-GGLVDNIIMRVVDIMLALPSLLLALVLVAIF------------GPSIVNAALA 167

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489914869 177 LSVLTLDGWaslilpaatialakcamiIRVTRAATRESLPQDYIKFARAKGLPEKRVLGVHLLKNILIPIVTVAGLEF 254
Cdd:PRK10913 168 LTFVALPHY------------------VRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINILPNCLAPLIVQASLGF 227
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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