|
Name |
Accession |
Description |
Interval |
E-value |
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
308-611 |
4.19e-25 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 105.20 E-value: 4.19e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 308 GDYDGALAELQAMSRRSPEDFDLMFMQAQLAYKAGRLDQARGYLQQYLDVQNQRQMAtapgatdagaaaadaHVLLSRIA 387
Cdd:COG2956 22 GQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEA---------------LLELAQDY 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 388 EDQGRYDEAIRELGR-IDDPAMRYSAHMRQATLRARQGRIDDALAMVDRadpqddeertlgvltkaqilrdadqvdrava 466
Cdd:COG2956 87 LKAGLLDRAEELLEKlLELDPDDAEALRLLAEIYEQEGDWEKAIEVLER------------------------------- 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 467 ilvaADKAMPDTVEIKYELAMLYERQGRIDQLERLLREVIALDPDHAHAYNALGYtLADRNQRLPEALDLITQALELSPE 546
Cdd:COG2956 136 ----LLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAE-LYLEQGDYEEAIAALERALEQDPD 210
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489915522 547 DPFILDSMGWVKFRMGEPSAAIEYLKRAYALRPEADIAAHLAEVLWVQGERDSATELLRTAYAKD 611
Cdd:COG2956 211 YLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
382-618 |
1.28e-22 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 97.88 E-value: 1.28e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 382 LLSRIAEDQGRYDEAIRELGRI--DDPAmRYSAHMRQATLRARQGRIDDALAMVDRADpQDDEERTLGVLTKAQILRDAD 459
Cdd:COG2956 13 FKGLNYLLNGQPDKAIDLLEEAleLDPE-TVEAHLALGNLYRRRGEYDRAIRIHQKLL-ERDPDRAEALLELAQDYLKAG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 460 QVDRAVAILVAADKAMPDTVEIKYELAMLYERQGRIDQLERLLREVIALDPDHAHAYNALGYtLADRNQRLPEALDLITQ 539
Cdd:COG2956 91 LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAE-LYLEQGDYDEAIEALEK 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 540 ALELSPEDPFILDSMGWVKFRMGEPSAAIEYLKRAYALRPE-ADIAAHLAEVLWVQGERDSATELLRTAYAKDPKNRALL 618
Cdd:COG2956 170 ALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDyLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLL 249
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
387-588 |
5.60e-21 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 97.37 E-value: 5.60e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 387 AEDQGRYDEAIRELGRIDDPAMRYSAHMRQATLRARQGRIDDALAMVDRADPQDDEERTLGVLTKAQILRDADQVDRAVA 466
Cdd:COG3914 20 AAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALA 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 467 ILVAADKAMPDTVEIKYELAMLYERQGRIDQLERLLREVIALDPDHAHAYNALGYTLaDRNQRLPEALDLITQALELSPE 546
Cdd:COG3914 100 LYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEAL-RRLGRLEEAIAALRRALELDPD 178
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 489915522 547 DPFILDSMGWVKFRMGEPSAAIEYLKRAYALRPEADIAAHLA 588
Cdd:COG3914 179 NAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
109-604 |
4.61e-20 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 94.77 E-value: 4.61e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 109 TAAATLVTLARETGDPRLARRGLEFQLAggnlpgaldaarawssLAPNDIEASSTELALAAANGETSglaTALRKRIDTA 188
Cdd:TIGR02917 500 PAAANLARIDIQEGNPDDAIQRFEKVLT----------------IDPKNLRAILALAGLYLRTGNEE---EAVAWLEKAA 560
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 189 RDKPAAIVQAMGVLS---RLNDRRLALRILDEsLSDSARKLPAAHLALADVAQAAGDYpraaneayaalaadpkseAAAQ 265
Cdd:TIGR02917 561 ELNPQEIEPALALAQyylGKGQLKKALAILNE-AADAAPDSPEAWLMLGRAQLAAGDL------------------NKAV 621
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 266 RVLEYGAKvdatraqhqarafinRNPDARKLRLMLAGQIADGGDYDGALAELQAMSRRSPEDFDLMFMQAQLAYKAGRLD 345
Cdd:TIGR02917 622 SSFKKLLA---------------LQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTE 686
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 346 QArgyLQQYLDVQNQRQMAtapgatdagaaaADAHVLLSRIAEDQGRYDEAIRELgriddpamrYSAHMRQATlrarqgr 425
Cdd:TIGR02917 687 SA---KKIAKSLQKQHPKA------------ALGFELEGDLYLRQKDYPAAIQAY---------RKALKRAPS------- 735
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 426 iDDALAMVDRAdpqddeertlgvltkaqiLRDADQVDRAVAILVAADKAMPDTVEIKYELAMLYERQGRIDQLERLLREV 505
Cdd:TIGR02917 736 -SQNAIKLHRA------------------LLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTV 796
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 506 IALDPDHAHAYNALGYTLadRNQRLPEALDLITQALELSPEDPFILDSMGWVKFRMGEPSAAIEYLKRAYALRPEA-DIA 584
Cdd:TIGR02917 797 VKKAPDNAVVLNNLAWLY--LELKDPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAaAIR 874
|
490 500
....*....|....*....|
gi 489915522 585 AHLAEVLWVQGERDSATELL 604
Cdd:TIGR02917 875 YHLALALLATGRKAEARKEL 894
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
445-618 |
3.29e-19 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 88.25 E-value: 3.29e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 445 TLGVLTKAQILRDADQVDRAVAILVAADKAMPDTVEIKYELAMLYERQGRIDQLERLLREVIALDPDHAHAYNALGYtLA 524
Cdd:COG2956 8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQ-DY 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 525 DRNQRLPEALDLITQALELSPEDPFILDSMGWVKFRMGEPSAAIEYLKRAYALRPE-ADIAAHLAEVLWVQGERDSATEL 603
Cdd:COG2956 87 LKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPEnAHAYCELAELYLEQGDYDEAIEA 166
|
170
....*....|....*.
gi 489915522 604 LRTAYAKDPKN-RALL 618
Cdd:COG2956 167 LEKALKLDPDCaRALL 182
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
422-624 |
7.12e-19 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 87.09 E-value: 7.12e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 422 RQGRIDDALAMVDRADPQDDEERTLgVLTKAQILRDADQVDRAVAILVAADKAMPDTVEIKYELAMLYERQGRIDQLERL 501
Cdd:COG2956 20 LNGQPDKAIDLLEEALELDPETVEA-HLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEEL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 502 LREVIALDPDHAHAYNALGYTLADRNQrLPEALDLITQALELSPEDPFILDSMGWVKFRMGEPSAAIEYLKRAYALRPE- 580
Cdd:COG2956 99 LEKLLELDPDDAEALRLLAEIYEQEGD-WEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDc 177
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 489915522 581 ADIAAHLAEVLWVQGERDSATELLRTAYAKDPKNRALLDTMRRL 624
Cdd:COG2956 178 ARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAEL 221
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
479-614 |
5.77e-18 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 80.62 E-value: 5.77e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 479 VEIKYELAMLYERQGRIDQLERLLREVIALDPDHAHAYNALGYTLADRNqRLPEALDLITQALELSPEDPFILDSMGWVK 558
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLG-DLDEAIVLLHEALELDPDEPEARLNLGLAL 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 489915522 559 FRMGEPSAAIEYLKRAYALRPE-ADIAAHLAEVLWVQGERDSATELLRTAYAKDPKN 614
Cdd:COG4783 83 LKAGDYDEALALLEKALKLDPEhPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
449-618 |
1.96e-16 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 83.12 E-value: 1.96e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 449 LTKAQILRDADQVDRAVAILVAADKAMPDTVEIKYELAMLYERQGRIDQLERLLREVIALDPDHAHAYNALGYTLADRNq 528
Cdd:COG3914 48 LAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALG- 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 529 RLPEALDLITQALELSPEDPFILDSMGWVKFRMGEPSAAIEYLKRAYALRPE-ADIAAHLAEVLWVQGERDSATELLRTA 607
Cdd:COG3914 127 RLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDnAEALNNLGNALQDLGRLEEAIAAYRRA 206
|
170
....*....|.
gi 489915522 608 YAKDPKNRALL 618
Cdd:COG3914 207 LELDPDNADAH 217
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
476-624 |
4.08e-16 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 78.51 E-value: 4.08e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 476 PDTVEIKYELAMLYERQGRIDQLERLLREVIALDPDHAHAYNALGYTLADRNqRLPEALDLITQALELSPEDPFILDSMG 555
Cdd:COG0457 5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLG-RYEEALADYEQALELDPDDAEALNNLG 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 556 WVKFRMGEPSAAIEYLKRAYALRPE-ADIAAHLAEVLWVQGERDSATELLRTAYAKDPKNRALLDTMRRL 624
Cdd:COG0457 84 LALQALGRYEEALEDYDKALELDPDdAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIA 153
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
405-624 |
8.82e-16 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 76.88 E-value: 8.82e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 405 DPAMRYSAHMRQATLRARQGRIDDALAMVDRADPQDDEERTLGVLTKAQILRDADQVDRAVAILVAADKamPDTVEIKYE 484
Cdd:COG4785 1 LYALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALAL--PDLAQLYYE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 485 LAMLYERQGRIDQLERLLREVIALDPDHAHAYNALGYTLAdRNQRLPEALDLITQALELSPEDPFILDSMGWVKFRMGEP 564
Cdd:COG4785 79 RGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYL-LLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRY 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 565 SAAIEYLKRAYALRPEADIAAHLAEVLWVQGERDSATELLRTAYAKDPKNRALLDTMRRL 624
Cdd:COG4785 158 ELAIADLEKALELDPNDPERALWLYLAERKLDPEKALALLLEDWATAYLLQGDTEEAREL 217
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
299-607 |
2.59e-15 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 77.26 E-value: 2.59e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 299 MLAGQIADG------GDYDGALAELQAMSRRSPEDFDLMFMQAQLAYKAGRLDQARGYLQQYLDVQNQRQMATapgatda 372
Cdd:COG3071 15 VLLAALLEGllalaeGRYARAEKLLSKAAEHSEAPLLAYLLAARAAQALGDYERRDEYLAQALELAPEAELAV------- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 373 gaaaadaHVLLSRIAEDQGRYDEAIRELGRIDDPAMRYSAHMR-QATLRARQGRIDDALAMVDR--------ADPQDDEE 443
Cdd:COG3071 88 -------LLTRAELLLDQGQAEQALATLEALRAGAPRHPQVLRlLLQAYRQLGDWEELLELLPAlrkhkalsAEEAQALE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 444 RTLGVLTKAQILRDADQVDRAVAILVAADKAMPdtvEIKYELAMLYERQGRIDQLERLLREVIALDPDhahayNALGYTL 523
Cdd:COG3071 161 RRAYLGLLRQAARDAEALKALWKALPRAERRDP---ELAAAYARALIALGDHDEAERLLREALKRQWD-----PRLVRLY 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 524 ADRNQ-RLPEALDLITQALELSPEDPFILDSMGWVKFRMGEPSAAIEYLKRAYALRPEADIAAHLAEVLWVQGERDSATE 602
Cdd:COG3071 233 GRLQGgDPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPSAEAYAELARLLEQLGDPEEAAE 312
|
....*
gi 489915522 603 LLRTA 607
Cdd:COG3071 313 HYRKA 317
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
410-619 |
3.02e-15 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 75.81 E-value: 3.02e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 410 YSAHMRQATLRARQGRIDDALAMVDRA---DPQDDEERTLgvltKAQILRDADQVDRAVAILVAADKAMPDTVEIKYELA 486
Cdd:COG0457 8 AEAYNNLGLAYRRLGRYEEAIEDYEKAlelDPDDAEALYN----LGLAYLRLGRYEEALADYEQALELDPDDAEALNNLG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 487 MLYERQGRIDQLERLLREVIALDPDHAHAYNALGYTLADRNqRLPEALDLITQALELSPEDPFILDSMGWVKFRMGEPSA 566
Cdd:COG0457 84 LALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELG-RYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEE 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 489915522 567 AIEYLKRAYALRPEADIAAHLAEVLWVQGERDSATELLRTAYAKDPKNRALLD 619
Cdd:COG0457 163 ALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILT 215
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
132-618 |
3.65e-15 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 79.36 E-value: 3.65e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 132 EFQLagGNLPGALDAARAWSSLAPNDIEASSTELALAAANGETSGLATALRKRIDTARDKPAAIVQAMGVLSRLNDRRLA 211
Cdd:TIGR02917 305 EYQL--GNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKA 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 212 LRILDESlSDSARKLPAAHLALADVAQAAGDYPRAANEAYAALAADPK-SEAAAQRVLEYGAKVDATRAQHQARAFINRN 290
Cdd:TIGR02917 383 AEYLAKA-TELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPElGRADLLLILSYLRSGQFDKALAAAKKLEKKQ 461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 291 PDARKLRLMLAGQIADGGDYDGALAELQAMSRRSPEDFDLMFMQAQLAYKAGRLDQARGYLQQYLdvqnqrqmatapgat 370
Cdd:TIGR02917 462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVL--------------- 526
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 371 DAGAAAADAHVLLSRIAEDQGRYDEAIRELGRID-------DPAMRYSAHMRqatlraRQGRIDDALAM-VDRADPQDDE 442
Cdd:TIGR02917 527 TIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAelnpqeiEPALALAQYYL------GKGQLKKALAIlNEAADAAPDS 600
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 443 ERTLGVLTKAQILrdADQVDRAVAILVAADKAMPDTVEIKYELAMLYERQGRIDQLERLLREVIALDPDHAHAYNALGYT 522
Cdd:TIGR02917 601 PEAWLMLGRAQLA--AGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQL 678
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 523 LADRNqRLPEALDLITQALELSPEDPFILDSMGWVKFRMGEPSAAIEYLKRAYALRPEADIAAHLAEVLWVQGERDSATE 602
Cdd:TIGR02917 679 LLAAK-RTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVK 757
|
490
....*....|....*.
gi 489915522 603 LLRTAYAKDPKNRALL 618
Cdd:TIGR02917 758 TLEAWLKTHPNDAVLR 773
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
449-580 |
1.38e-14 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 70.99 E-value: 1.38e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 449 LTKAQILRDADQVDRAVAILVAADKAMPDTVEIKYELAMLYERQGRIDQLERLLREVIALDPDHAHAYNALGYTLAdRNQ 528
Cdd:COG4783 8 YALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL-KAG 86
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 489915522 529 RLPEALDLITQALELSPEDPFILDSMGWVKFRMGEPSAAIEYLKRAYALRPE 580
Cdd:COG4783 87 DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
204-618 |
2.40e-14 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 76.66 E-value: 2.40e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 204 RLNDRRLALRILDESLSDSARKLPAAhLALADVAQAAGDYPRAANEAYAALAADPKSEAA----AQRVLEYGAKVDATRA 279
Cdd:TIGR02917 137 GLGQLELAQKSYEQALAIDPRSLYAK-LGLAQLALAENRFDEARALIDEVLTADPGNVDAlllkGDLLLSLGNIELALAA 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 280 QHQARAFinrNPDARKLRLMLAGQIADGGDYDGALAELQAMSRRSPEDFDLMFMQAQLAYKAGRLDQARGYLQQYL---- 355
Cdd:TIGR02917 216 YRKAIAL---RPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALksap 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 356 DVQNQRQMATAPGATDAGAAAADAHV---------------LLSRIAEDQGRYDEAIRELGRIDDPAMRYSAHMRQATLR 420
Cdd:TIGR02917 293 EYLPALLLAGASEYQLGNLEQAYQYLnqilkyapnshqarrLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEA 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 421 A-RQGRIDDALAMVDRA---DPQDDEERT-LGVLTKAQilrdaDQVDRAVAILVAADKAMPDTVEIKYELAMLYERQGRI 495
Cdd:TIGR02917 373 YlALGDFEKAAEYLAKAtelDPENAAARTqLGISKLSQ-----GDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQF 447
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 496 DQLERLLREVIALDPDHAHAYNALGYTLADRNQrLPEALDLITQALELSPEDPFILDSMGWVKFRMGEPSAAIEYLKRAY 575
Cdd:TIGR02917 448 DKALAAAKKLEKKQPDNASLHNLLGAIYLGKGD-LAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVL 526
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 489915522 576 ALRPEaDIAAH--LAEVLWVQGERDSATELLRTAYAKDPKNRALL 618
Cdd:TIGR02917 527 TIDPK-NLRAIlaLAGLYLRTGNEEEAVAWLEKAAELNPQEIEPA 570
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
133-627 |
7.68e-14 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 75.12 E-value: 7.68e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 133 FQLAGGNLPGALDAARAWSSLAPNDIEAsstELALAAA---NGETSGLATALRKRIDTARDKPAAIVQAMGVLSRLNDRR 209
Cdd:TIGR02917 406 SKLSQGDPSEAIADLETAAQLDPELGRA---DLLLILSylrSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLA 482
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 210 LALRILDESLSDSARKLPAAHlALADVAQAAGDYPRAANEAYAALAADPKSEAA----AQRVLEYGAKVDATRAQHQARA 285
Cdd:TIGR02917 483 KAREAFEKALSIEPDFFPAAA-NLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAilalAGLYLRTGNEEEAVAWLEKAAE 561
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 286 finRNPDARKLRLMLAGQIADGGDYDGALA---ELQAMSRRSPEDFdLMFMQAQLAykAGRLDQARGYLQQYLDVQNQRQ 362
Cdd:TIGR02917 562 ---LNPQEIEPALALAQYYLGKGQLKKALAilnEAADAAPDSPEAW-LMLGRAQLA--AGDLNKAVSSFKKLLALQPDSA 635
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 363 MAtapgatdagaaaadaHVLLSRIAEDQGRYDEAIRELGRI--DDPAMRySAHMRQATLRARQGRIDDALAMVDRADPQD 440
Cdd:TIGR02917 636 LA---------------LLLLADAYAVMKNYAKAITSLKRAleLKPDNT-EAQIGLAQLLLAAKRTESAKKIAKSLQKQH 699
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 441 DEErTLGVLTKAQI-LRDADQVDRAVAILVAADKAMPDTVEIKyeLAMLYERQGRIDQLERLLREVIALDPDHAHAYNAL 519
Cdd:TIGR02917 700 PKA-ALGFELEGDLyLRQKDYPAAIQAYRKALKRAPSSQNAIK--LHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTAL 776
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 520 GYTLADRNQRLpEALDLITQALELSPEDPFILDSMGWVkFRMGEPSAAIEYLKRAYALRPE-ADIAAHLAEVLWVQGERD 598
Cdd:TIGR02917 777 AELYLAQKDYD-KAIKHYQTVVKKAPDNAVVLNNLAWL-YLELKDPRALEYAERALKLAPNiPAILDTLGWLLVEKGEAD 854
|
490 500 510
....*....|....*....|....*....|....*..
gi 489915522 599 SATELLRTAYAKDPKN--------RALLDTMRRLEVR 627
Cdd:TIGR02917 855 RALPLLRKAVNIAPEAaairyhlaLALLATGRKAEAR 891
|
|
| MamA |
NF040959 |
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise ... |
451-586 |
1.41e-13 |
|
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise magnetic mineral crystals in magnetotactic bacteria (MTB). Magnetosomes are important for MTB to search for preferred microaerophilic environment. Proteins of this family typically contain five tetra-trico-peptide repeat (TPR) motifs. Based on structural analyses, MamA forms a large homooligomer through self-recognition to regulate protein-protein interaction in magnetosomes.
Pssm-ID: 468889 [Multi-domain] Cd Length: 204 Bit Score: 70.10 E-value: 1.41e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 451 KAQILRD-------ADQVDRAVAILVAADKAMPDTVEIKYELAMLYERQGRIDQLERLLREVIALDPDHAHAYNALGYTL 523
Cdd:NF040959 36 RAKMYRNkgishakKGRYDKAVRYLEQVARIDPDDVEALYRLGVAYLKTGQYDRAIKVLEKVLSLAPDHVKAAYRKGVAL 115
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489915522 524 AdRNQRLPEALDLITQALELSPEDPFILDSMGWVKFRMGEPSAAIEYLKRAYALRPEaDIAAH 586
Cdd:NF040959 116 L-KIKDYEKAVEDLEEALEEKPDNFNLNYRLGLALDGLGQYDKAIEAFQKALELDPN-EIKYH 176
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
463-591 |
5.96e-13 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 66.18 E-value: 5.96e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 463 RAVAILVAADKAMPDTVEIKYELAMLYERQGRIDQLERLLREVIALDPDHAHAYNALGYTLAdRNQRLPEALDLITQALE 542
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALL-AAGDTEEAEELLERALA 79
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 489915522 543 LSPEDPFILDSMGWVKFRMGEPSAAIEYLKRAYALRPEADIAAHLAEVL 591
Cdd:COG4235 80 LDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
229-471 |
2.02e-12 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 67.83 E-value: 2.02e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 229 AHLALADVAQAAGDYPRAANEAYAALAADPKSEAAAQR-VLEYGAKVDATRAQHQARAFINRNPDARKLRLMLAGQIADG 307
Cdd:COG2956 44 AHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLElAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQE 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 308 GDYDGALAELQAMSRRSPEDFDLMFMQAQLAYKAGRLDQARGYLQQYLDVQNQRQMAtapgatdagaaaadaHVLLSRIA 387
Cdd:COG2956 124 GDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARA---------------LLLLAELY 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 388 EDQGRYDEAIRELGRIDDPAMRY-SAHMRQATLRARQGRIDDALAMVDRADPQDDEERTLgvLTKAQILRDADQVDRAVA 466
Cdd:COG2956 189 LEQGDYEEAIAALERALEQDPDYlPALPRLAELYEKLGDPEEALELLRKALELDPSDDLL--LALADLLERKEGLEAALA 266
|
....*
gi 489915522 467 ILVAA 471
Cdd:COG2956 267 LLERQ 271
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
488-581 |
7.25e-12 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 61.72 E-value: 7.25e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 488 LYERQGRIDQLERLLREVIALDPDHAHAYNALGYTLADRNqRLPEALDLiTQALELSPEDPFILDSMGWVKFRMGEPSAA 567
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQG-RYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEA 78
|
90
....*....|....
gi 489915522 568 IEYLKRAYALRPEA 581
Cdd:COG3063 79 LAYLERALELDPSA 92
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
506-614 |
2.26e-11 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 64.26 E-value: 2.26e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 506 IALDPDHAHAYNALGYTLADRNqRLPEALDLITQALELSPEDPFILDSMGWVKFRMGEPSAAIEYLKRAYALRPE-ADIA 584
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLG-RYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDdAEAL 79
|
90 100 110
....*....|....*....|....*....|
gi 489915522 585 AHLAEVLWVQGERDSATELLRTAYAKDPKN 614
Cdd:COG0457 80 NNLGLALQALGRYEEALEDYDKALELDPDD 109
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
497-614 |
9.32e-10 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 56.94 E-value: 9.32e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 497 QLERLLREVIALDPDHAHAYNALGYTLAdRNQRLPEALDLITQALELSPEDPFILDSMGWVKFRMGEPSAAIEYLKRAYA 576
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYL-RLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALA 79
|
90 100 110
....*....|....*....|....*....|....*....
gi 489915522 577 LRPE-ADIAAHLAEVLWVQGERDSATELLRTAYAKDPKN 614
Cdd:COG4235 80 LDPDnPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
218-613 |
1.60e-09 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 61.25 E-value: 1.60e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 218 SLSDSARKLPAAHLALADVAQAAGDYPRAANEAYAALAADPKSEAA----AQRVLEYGakvDATRAQHQARAFINRNPDA 293
Cdd:TIGR02917 13 ALSACGDQSPEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEArfllGKIYLALG---DYAAAEKELRKALSLGYPK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 294 RKLRLMLAGQIADGGDYDGALAELQAMSRRSPEDFDLMFMQAQLAYKA-GRLDQARGYLQQYLDVQNQRQMATAPgatda 372
Cdd:TIGR02917 90 NQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGlGQLELAQKSYEQALAIDPRSLYAKLG----- 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 373 gaaaadahvlLSRIAEDQGRYDEAIRELGRI--DDPAMRySAHMRQATLRARQGRIDDALAM------------------ 432
Cdd:TIGR02917 165 ----------LAQLALAENRFDEARALIDEVltADPGNV-DALLLKGDLLLSLGNIELALAAyrkaialrpnniavllal 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 433 ---------VDRADPQDDEERT------LGVLTKAQILRDADQVDRAVAILVAADKAMPDTVEIKYELAMLYERQGRIDQ 497
Cdd:TIGR02917 234 atilieageFEEAEKHADALLKkapnspLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQ 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 498 LERLLREVIALDPDHAHAYNALGYTLAdRNQRLPEALDLITQALELSPEDPFILDSMGWVKFRMGEPSAAIEYLKRAYAL 577
Cdd:TIGR02917 314 AYQYLNQILKYAPNSHQARRLLASIQL-RLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATEL 392
|
410 420 430
....*....|....*....|....*....|....*..
gi 489915522 578 RPE-ADIAAHLAEVLWVQGERDSATELLRTAYAKDPK 613
Cdd:TIGR02917 393 DPEnAAARTQLGISKLSQGDPSEAIADLETAAQLDPE 429
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
380-591 |
5.58e-09 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 57.32 E-value: 5.58e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 380 HVLLSRIAEDQGRYDEAIRELGR-IDDPAMRYSAHMRQATLRARQGRIDDALAMVDRA---DPQDDEERtlgvLTKAQIL 455
Cdd:COG0457 11 YNNLGLAYRRLGRYEEAIEDYEKaLELDPDDAEALYNLGLAYLRLGRYEEALADYEQAlelDPDDAEAL----NNLGLAL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 456 RDADQVDRAVAILVAADKAMPDTVEIKYELAMLYERQGRIDQLERLLREVIALDPDHAHAYNALGYTLAdRNQRLPEALD 535
Cdd:COG0457 87 QALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALE-KLGRYEEALE 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 489915522 536 LITQALELSPEDPFILDSMGWVKFRMGEPSAAIEYLKRAYALRPEADIAAHLAEVL 591
Cdd:COG0457 166 LLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAE 221
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
435-548 |
6.44e-09 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 54.63 E-value: 6.44e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 435 RADPQDDEertlGVLTKAQILRDADQVDRAVAILVAADKAMPDTVEIKYELAMLYERQGRIDQLERLLREVIALDPDHAH 514
Cdd:COG4235 11 AANPNDAE----GWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPE 86
|
90 100 110
....*....|....*....|....*....|....
gi 489915522 515 AYNALGYtLADRNQRLPEALDLITQALELSPEDP 548
Cdd:COG4235 87 ALYLLGL-AAFQQGDYAEAIAAWQKLLALLPADA 119
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
263-435 |
6.98e-09 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 56.81 E-value: 6.98e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 263 AAQRVLEYGAKVDATRAQHQARAFINRNPDARKL------------RLMLAGQIADGGDYDGALAE-LQAMSRRSPEDFD 329
Cdd:COG4700 46 FAEVLPELRNSRDARRVQRAARNALDPGRELRELekalefadtvqnRVRLADALLELGRYDEAIELyEEALTGIFADDPH 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 330 LMFMQAQLAYKAGRLDQARGYLQ--QYLDVQNQRQMAtapgatdagaaaadaHVLLSRIAEDQGRYDEAIRELGRIDDPA 407
Cdd:COG4700 126 ILLGLAQALFELGRYAEALETLEklIAKNPDFKSSDA---------------HLLYARALEALGDLEAAEAELEALARRY 190
|
170 180
....*....|....*....|....*...
gi 489915522 408 MRYSAHMRQATLRARQGRIDDALAMVDR 435
Cdd:COG4700 191 SGPEARYRYAKFLARQGRTAEAKELLEE 218
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
462-612 |
7.21e-09 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 54.97 E-value: 7.21e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 462 DRAVAILVAADKAMPDTVEIKYELAMLYERQGRIDQLERLLREVIALDPDHAHAYNALGYTLADRNQRLPEALDLITQAL 541
Cdd:COG5010 2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAL 81
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489915522 542 ELSPEDPFILDSMGWVKFRMGEPSAAIEYLKRAYALRPE-ADIAAHLAEVLWVQGERDSATELLRTAYAKDP 612
Cdd:COG5010 82 QLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDnPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
211-621 |
1.38e-08 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 58.17 E-value: 1.38e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 211 ALRIlDESLSDSARKLPAAHLALADVAQAAGDYPRAANEAYAALAADPK------SEAAAQRVLEYGAKVDATRAQHQAR 284
Cdd:TIGR02917 48 ALQK-DPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLlaraylLQGKFQQVLDELPGKTLLDDEGAAE 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 285 --------AFINRNPDARKLRLMLAGQIADG---------------GDYDGALAELQAMSRRSPEDFDLMFMQAQLAYKA 341
Cdd:TIGR02917 127 llalrglaYLGLGQLELAQKSYEQALAIDPRslyaklglaqlalaeNRFDEARALIDEVLTADPGNVDALLLKGDLLLSL 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 342 GRLDQARGYLQQYLDVQNQRQMAtapgatdagaaaadaHVLLSRIAEDQGRYDEAIRELGRIDDPAMRYS-AHMRQATLR 420
Cdd:TIGR02917 207 GNIELALAAYRKAIALRPNNIAV---------------LLALATILIEAGEFEEAEKHADALLKKAPNSPlAHYLKALVD 271
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 421 ARQGRIDDALAMVDRADPQDDEERTLGVLTKAqILRDADQVDRAVAILVAADKAMPDTVEIKYELAMLYERQGRIDQLER 500
Cdd:TIGR02917 272 FQKKNYEDARETLQDALKSAPEYLPALLLAGA-SEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIA 350
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 501 LLREVIALDPDHAHAYNALGYTLAdRNQRLPEALDLITQALELSPEDPFILDSMGWVKFRMGEPSAAIEYLKRAYALRPE 580
Cdd:TIGR02917 351 TLSPALGLDPDDPAALSLLGEAYL-ALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE 429
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 489915522 581 AdIAAHLAEVLWV--QGERDSATELLRTAYAKDPKNRALLDTM 621
Cdd:TIGR02917 430 L-GRADLLLILSYlrSGQFDKALAAAKKLEKKQPDNASLHNLL 471
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
523-624 |
9.66e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 51.35 E-value: 9.66e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 523 LADRNQRLPEALDLITQALELSPEDPFILDSMGWVKFRMGEPSAAIEYLKRAYALRP-EADIAAHLAEVLWVQGERDSAT 601
Cdd:COG4783 13 ALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPdEPEARLNLGLALLKAGDYDEAL 92
|
90 100
....*....|....*....|...
gi 489915522 602 ELLRTAYAKDPKNRALLDTMRRL 624
Cdd:COG4783 93 ALLEKALKLDPEHPEAYLRLARA 115
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
523-616 |
1.02e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 50.17 E-value: 1.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 523 LADRNQRLPEALDLITQALELSPEDPFILDSMGWVKFRMGEPSAAIEYlKRAYALRPE-ADIAAHLAEVLWVQGERDSAT 601
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNnAEALLNLAELLLELGDYDEAL 79
|
90
....*....|....*
gi 489915522 602 ELLRTAYAKDPKNRA 616
Cdd:COG3063 80 AYLERALELDPSALR 94
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
95-398 |
4.69e-07 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 52.22 E-value: 4.69e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 95 IVGAELAAQRGMYGTAAATLVTLARETGDPRLARRGL--EFQLAGGNLPGALDAARAWSSLAPNDIEASSTELALAAANG 172
Cdd:COG3071 54 LLAARAAQALGDYERRDEYLAQALELAPEAELAVLLTraELLLDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLG 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 173 ETSG---LATALRKRIDTARDKPAAIVQ--AMGVLSRLNDRRLALRILDESLSDSARKLPAAHLALADVAQAAGDYpraa 247
Cdd:COG3071 134 DWEElleLLPALRKHKALSAEEAQALERraYLGLLRQAARDAEALKALWKALPRAERRDPELAAAYARALIALGDH---- 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 248 neayaalaadpkseAAAQRVLeygakvdatraqhqaRAFINRNPDARKLRLMLAGQiadGGDYDGALAELQAMSRRSPED 327
Cdd:COG3071 210 --------------DEAERLL---------------REALKRQWDPRLVRLYGRLQ---GGDPAKQLKRAEKWLKKHPND 257
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489915522 328 FDLMFMQAQLAYKAGRLDQARGYLQQYLDVQNQRQmatapgatdagaaaadAHVLLSRIAEDQGRYDEAIR 398
Cdd:COG3071 258 PDLLLALGRLCLRNQLWGKAREYLEAALALRPSAE----------------AYAELARLLEQLGDPEEAAE 312
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
98-355 |
1.69e-06 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 50.11 E-value: 1.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 98 AELAAQRGMYGTAAATLVTLARETGDPRLARRGL-EFQLAGGNLPGALDAARAWSSLAPNDIEASSTELALAAANGETSG 176
Cdd:COG2956 49 GNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELaQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEK 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 177 LATALRKRIDTARDKPAAIVQAMGVLSRLNDRRLALRILDESLsDSARKLPAAHLALADVAQAAGDYPraaneayaalaa 256
Cdd:COG2956 129 AIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAL-KLDPDCARALLLLAELYLEQGDYE------------ 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 257 dpKSEAAAQRVLEygakvdatraqhqarafinRNPDARKLRLMLAGQIADGGDYDGALAELQAMSRRSPEDfDLMFMQAQ 336
Cdd:COG2956 196 --EAIAALERALE-------------------QDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSD-DLLLALAD 253
|
250
....*....|....*....
gi 489915522 337 LAYKAGRLDQARGYLQQYL 355
Cdd:COG2956 254 LLERKEGLEAALALLERQL 272
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
380-512 |
2.35e-06 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 47.49 E-value: 2.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 380 HVLLSRIAEDQGRYDEAIRELGRIDDPAMRY-SAHMRQATLRARQGRIDDALAMVDRADPQDDEERTLgVLTKAQILRDA 458
Cdd:COG4783 7 LYALAQALLLAGDYDEAEALLEKALELDPDNpEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEA-RLNLGLALLKA 85
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 489915522 459 DQVDRAVAILVAADKAMPDTVEIKYELAMLYERQGRIDQLERLLREVIALDPDH 512
Cdd:COG4783 86 GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
193-403 |
4.01e-06 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 49.99 E-value: 4.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 193 AAIVQAMGVLSRLNDRRLALRILDESLSDSARKLPAAHLALADVAQAAGDYPRAANEAYAALAADPKSEAAAQRVLEYGA 272
Cdd:COG3914 14 AAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 273 KVDATRAQHQARAfinRNPDARKLRLMLAGQIADGGDYDGALAELQAMSRRSPEDFDLMFMQAQLAYKAGRLDQARGYLQ 352
Cdd:COG3914 94 YEEALALYRRALA---LNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALR 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 489915522 353 QYLDVQNQRQMAtapgatdagaaaadaHVLLSRIAEDQGRYDEAIRELGRI 403
Cdd:COG3914 171 RALELDPDNAEA---------------LNNLGNALQDLGRLEEAIAAYRRA 206
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
487-585 |
1.14e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 44.60 E-value: 1.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 487 MLYERQGRIDQLERLLREVIALDPDHAHAYNALgYTLAD---RNQRLPEALDLITQALELSPEDPFILDSM---GWVKFR 560
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNSPLAPDAL-YWLGEayyALGDYDEAAEAFEKLLKRYPDSPKAPDALlklGLSYLE 79
|
90 100
....*....|....*....|....*
gi 489915522 561 MGEPSAAIEYLKRAYALRPEADIAA 585
Cdd:COG1729 80 LGDYDKARATLEELIKKYPDSEAAK 104
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
259-402 |
1.64e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 44.80 E-value: 1.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 259 KSEAAAQRVLEYGAKVDATRAQHQARAFINRNPDARKLRLMLAGQIADGGDYDGALAELQAMSRRSPEDFDLMFMQAQLA 338
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489915522 339 YKAGRLDQARGYLQQYLDVQNQrqmatapgatdagaaAADAHVLLSRIAEDQGRYDEAIRELGR 402
Cdd:COG4783 83 LKAGDYDEALALLEKALKLDPE---------------HPEAYLRLARAYRALGRPDEAIAALEK 131
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
390-607 |
3.18e-05 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 46.90 E-value: 3.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 390 QGRYDEAIRELGR-ID-DPAMRYSaHMRQATLRARQGRIDDALAMVDRADPQDDEERTLgVLTKAQ---ILRDADQVDRA 464
Cdd:TIGR00990 344 KGKHLEALADLSKsIElDPRVTQS-YIKRASMNLELGDPDKAEEDFDKALKLNSEDPDI-YYHRAQlhfIKGEFAQAGKD 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 465 VAILVAADkamPDTVEIKYELAMLYERQGRIDQLERLLREVIALDPDHAHAYNALGYTLADRNqRLPEALDLITQALELS 544
Cdd:TIGR00990 422 YQKSIDLD---PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQN-KFDEAIEKFDTAIELE 497
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489915522 545 PE-DPFILDSMGWVK-----FRMGEP-SAAIEYLKRAYALRPEADIA-AHLAEVLWVQGERDSATELLRTA 607
Cdd:TIGR00990 498 KEtKPMYMNVLPLINkalalFQWKQDfIEAENLCEKALIIDPECDIAvATMAQLLLQQGDVDEALKLFERA 568
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
390-626 |
3.97e-05 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 46.06 E-value: 3.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 390 QGRYDEAIRELGR-IDDPAMRYSAHMRQATLRARQGRIDDALAMVDRADPQDDEERTLGVLTKAQILRDADQVDRAVAIL 468
Cdd:COG3071 29 EGRYARAEKLLSKaAEHSEAPLLAYLLAARAAQALGDYERRDEYLAQALELAPEAELAVLLTRAELLLDQGQAEQALATL 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 469 VAADKAMPDTVEIKYELAMLYERQGRIDQLERLLREVI---ALDPDHAHAYNALGYT-LADRNQRLPEALDLITQALels 544
Cdd:COG3071 109 EALRAGAPRHPQVLRLLLQAYRQLGDWEELLELLPALRkhkALSAEEAQALERRAYLgLLRQAARDAEALKALWKAL--- 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 545 pedpfildsmgwvkfrmgePSAaieylkrayaLRPEADIAAHLAEVLWVQGERDSATELLRTAYAKDPkNRALLDTMRRL 624
Cdd:COG3071 186 -------------------PRA----------ERRDPELAAAYARALIALGDHDEAERLLREALKRQW-DPRLVRLYGRL 235
|
..
gi 489915522 625 EV 626
Cdd:COG3071 236 QG 237
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
392-545 |
3.98e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 44.18 E-value: 3.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 392 RYDEAIRELGRIDDPAMRYSAHMRQATLRARQGRIDDALAMVDRADPQDDEERTLGVLTKAQILRDADQVDRAVAILVAA 471
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489915522 472 DKAMPDTVEIKYELAMLYERQGRIDQLERLLREVIALDPDHAHAYNALGYTLAdRNQRLPEALDLITQALELSP 545
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLL-SLGQDDEAKAALQRALGTSP 153
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
264-446 |
4.30e-05 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 47.00 E-value: 4.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 264 AQRVLEYGAKVDATRAQHQARAFINRNPDARKLRLMLAGQIADGGDYDGALAELQAMSRRSPEDFDLMFMQAQLAYKAGR 343
Cdd:PRK11447 573 SDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGD 652
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 344 LDQARGYLQQ-----YLDVQNQRQMATAPGATDAGAAAADahvLLSRIAEDQGRydeairelgridDPAMRYSAHMRQ-- 416
Cdd:PRK11447 653 LAAARAQLAKlpataNDSLNTQRRVALAWAALGDTAAAQR---TFNRLIPQAKS------------QPPSMESALVLRda 717
|
170 180 190
....*....|....*....|....*....|....*....
gi 489915522 417 ATLRARQGRIDDAL-----AMVDR----ADPQDDEERTL 446
Cdd:PRK11447 718 ARFEAQTGQPQQALetykdAMVASgitpTRPQDNDTFTR 756
|
|
| PksD |
COG3321 |
Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites ... |
78-609 |
7.49e-05 |
|
Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 442550 [Multi-domain] Cd Length: 1386 Bit Score: 46.02 E-value: 7.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 78 RPGQLPYVSLTADIFYRIVGAELAAQrgmygtAAATLVTLARETGDPRLARRGLEFQLAGGNLPGALDAARAWSSLAPND 157
Cdd:COG3321 854 PGRGRRRVPLPTYPFQREDAAAALLA------AALAAALAAAAALGALLLAALAAALAAALLALAAAAAAALALAAAALA 927
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 158 IEASSTELALAAANGETSGLATALRKRIDTARDKPAAIVQAMGVLSRLNDRRLALRILDESLSDSARKLPAAHLALADVA 237
Cdd:COG3321 928 ALLALVALAAAAAALLALAAAAAAAAAALAAAEAGALLLLAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAALALLAA 1007
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 238 QAAGDYPRAANEAYAALAADPKSEAAAQRVLEYGAKVDATRAQHQARAFINRNPDARKLRLMLAGQIADGGDYDGALAEL 317
Cdd:COG3321 1008 AALLLAAAAAAAALLALAALLAAAAAALAAAAAAAAAAAALAALAAAAAAAAALALALAALLLLAALAELALAAAALALA 1087
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 318 QAMSRRSPEDFDLMFMQAQLAYKAGRLDQARGYLQQYLDVQNQRQMATAPGATDAGAAAADAHVLLSRIAEDQGRYDEAI 397
Cdd:COG3321 1088 AALAAAALALALAALAAALLLLALLAALALAAAAAALLALAALLAAAAAAAALAAAAAAAAALALAAAAAALAAALAAAL 1167
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 398 RELGRIDDPAMRYSAHMRQATLRARQGRIDDALAMVDRADPQDDEERTLGVLTKAQILRDADQVDRAVAILVAADKAMPD 477
Cdd:COG3321 1168 LAAAALLLALALALAAALAAALAGLAALLLAALLAALLAALLALALAALAAAAAALLAAAAAAAALALLALAAAAAAVAA 1247
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 478 TVEIKYELAMLYERQGRI-DQLERLLREVIALDPDHAHAYNALGYTLADRNQRLPEALDLITQALELSPEDPFILDSMGW 556
Cdd:COG3321 1248 LAAAAAALLAALAALALLaAAAGLAALAAAAAAAAAALALAAAAAAAAAALAALLAAAAAAAAAAAAAAAAAALAAALLA 1327
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|...
gi 489915522 557 VKFRMGEPSAAIEYLKRAYALRPEADIAAHLAEVLWVQGERDSATELLRTAYA 609
Cdd:COG3321 1328 AALAALAAAVAAALALAAAAAAAAAAAAAAAAAAALAAAAGAAAAAAALALAA 1380
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
484-621 |
1.08e-04 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 44.80 E-value: 1.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 484 ELAMLYERQGRIDQLERLLREVIALDPDHAHAYNALGyTLADRNQRLPEALDLITQALELSPED-PFILDSMGWVKFRMG 562
Cdd:PRK11788 185 ELAQQALARGDLDAARALLKKALAADPQCVRASILLG-DLALAQGDYAAAIEALERVEEQDPEYlSEVLPKLMECYQALG 263
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 489915522 563 EPSAAIEYLKRAYALRPEADIAAHLAEVLWVQGERDSATELLRTAYAKDPKNRALLDTM 621
Cdd:PRK11788 264 DEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLL 322
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
278-417 |
1.67e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 41.92 E-value: 1.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 278 RAQHQARAFINRNPDARKLRLMLAGQIADGGDYDGALAELQAMSRRSPEDFDLMFMQAQLAYKAGRLDQARGYLQQYLDV 357
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489915522 358 QNQRQMAtapgatdagaaaadaHVLLSRIAEDQGRYDEAIRELGRI------DDPAMRYSAHMRQA 417
Cdd:COG4235 81 DPDNPEA---------------LYLLGLAAFQQGDYAEAIAAWQKLlallpaDAPARLLEASIAEA 131
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
412-516 |
3.61e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 40.76 E-value: 3.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 412 AHMRQATLRARQGRIDDALAMVDRA---DPQDDEERTLgvltKAQILRDADQVDRAVAILVAADKAMPDTVEIKYELAML 488
Cdd:COG4235 19 GWLLLGRAYLRLGRYDEALAAYEKAlrlDPDNADALLD----LAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLA 94
|
90 100
....*....|....*....|....*...
gi 489915522 489 YERQGRIDQLERLLREVIALDPDHAHAY 516
Cdd:COG4235 95 AFQQGDYAEAIAAWQKLLALLPADAPAR 122
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
270-504 |
5.23e-04 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 42.30 E-value: 5.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 270 YGAKVDATRAQHQARAFINRNPDARKLRLMLAGQIADGGDYDGALAELQAMSRRSPEDFDLMFMQAQLAYKAGRLDQARG 349
Cdd:COG0457 18 YRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 350 YLQQYLDVQNQRQMAtapgatdagaaaadaHVLLSRIAEDQGRYDEAIRELGRIDDPAMRYS-AHMRQATLRARQGRIDD 428
Cdd:COG0457 98 DYDKALELDPDDAEA---------------LYNLGLALLELGRYDEAIEAYERALELDPDDAdALYNLGIALEKLGRYEE 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489915522 429 ALAMVDRADPQDDEERTLGVLTKAQILRDADQVDRAVAILVAADKAMPDTVEIKYELAMLYERQGRIDQLERLLRE 504
Cdd:COG0457 163 ALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAAL 238
|
|
| PRK09782 |
PRK09782 |
bacteriophage N4 receptor, outer membrane subunit; Provisional |
483-573 |
8.82e-04 |
|
bacteriophage N4 receptor, outer membrane subunit; Provisional
Pssm-ID: 236624 [Multi-domain] Cd Length: 987 Bit Score: 42.59 E-value: 8.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 483 YELAMLYERQGRIDQLERLLREVIALDPDHAHAYNALGYTLADrNQRLPEALDLITQALELSPEDPFILDSMGWVKFRMG 562
Cdd:PRK09782 613 VARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWD-SGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLD 691
|
90
....*....|.
gi 489915522 563 EPSAAIEYLKR 573
Cdd:PRK09782 692 DMAATQHYARL 702
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
92-360 |
1.58e-03 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 41.52 E-value: 1.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 92 FYRIVGAELAAQRGMYGTAAATLVTLARETGDPRLARRGLEFQLAGGNLPGALDAARAWSSLAPNDIEASSTELALAAAN 171
Cdd:COG3914 12 LAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQAL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 172 GETSGLATALRKRIDTARDKPAAIVQAMGVLSRLNDRRLALRILDESLSDSARkLPAAHLALADVAQAAGDYpraaneay 251
Cdd:COG3914 92 GRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPD-FAEAYLNLGEALRRLGRL-------- 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 252 aalaadpkSEAAAQrvleygakvdatraqhqARAFINRNPDARKLRLMLAGQIADGGDYDGALAELQAMSRRSPEDFDLM 331
Cdd:COG3914 163 --------EEAIAA-----------------LRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAH 217
|
250 260
....*....|....*....|....*....
gi 489915522 332 FMQAQLAYKAGRLDQARGYLQQYLDVQNQ 360
Cdd:COG3914 218 SNLLFALRQACDWEVYDRFEELLAALARG 246
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
228-355 |
2.14e-03 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 39.02 E-value: 2.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 228 AAHLALADVAQAAGDYPRAANEAYAALAADPKSEAAAQRVLEYGAKV-DATRAQHQARAFINRNPDARKLRLMLAGQIAD 306
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLgDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 489915522 307 GGDYDGALAELQAMSRRSPEDFDLMFMQAQLAYKAGRLDQARGYLQQYL 355
Cdd:COG4783 85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKAL 133
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
526-625 |
2.67e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 38.05 E-value: 2.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 526 RNQRLPEALDLITQALELSPEDPFILDS---MGWVKFRMGEPSAAIEYLKRAYALRPEADIAA----HLAEVLWVQGERD 598
Cdd:COG1729 5 KAGDYDEAIAAFKAFLKRYPNSPLAPDAlywLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPdallKLGLSYLELGDYD 84
|
90 100
....*....|....*....|....*..
gi 489915522 599 SATELLRTAYAKDPKNRALLDTMRRLE 625
Cdd:COG1729 85 KARATLEELIKKYPDSEAAKEARARLA 111
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
532-587 |
3.80e-03 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 39.92 E-value: 3.80e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 489915522 532 EALDLITQALELSPEDPFILDSMGWVKFRMGEPSAAIEYLKRAYALRPEADIAAHL 587
Cdd:cd24142 18 LALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYEKYL 73
|
|
| SirB1 |
COG2912 |
Regulator of sirC expression, contains transglutaminase-like and TPR domains [Signal ... |
526-591 |
4.07e-03 |
|
Regulator of sirC expression, contains transglutaminase-like and TPR domains [Signal transduction mechanisms];
Pssm-ID: 442156 [Multi-domain] Cd Length: 264 Bit Score: 39.42 E-value: 4.07e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489915522 526 RNQRLPEALDLITQALELSPEDPFILDSMGWVKFRMGEPSAAIEYLKRAYALRPEADIAAHLAEVL 591
Cdd:COG2912 191 REKDWERALRVVERLLLLDPDDPYEIRDRGLLYAQLGCYQAALEDLEYFLEQCPEDPDAELIKEQL 256
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
458-519 |
4.36e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 36.02 E-value: 4.36e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489915522 458 ADQVDRAVAILVAADKAMPDTVEIKYELAMLYERQGRIDQLERLLREVIALDPDHAHAYNAL 519
Cdd:pfam14559 1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALL 62
|
|
| YfgM |
COG2976 |
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ... |
332-431 |
7.28e-03 |
|
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];
Pssm-ID: 442215 [Multi-domain] Cd Length: 207 Bit Score: 38.30 E-value: 7.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 332 FMQAQLAYKAGRLDQARGYLQQYLD---VQNQRQMATAPgatdagaaaadahvlLSRIAEDQGRYDEAIRELGRIDDPAM 408
Cdd:COG2976 94 LLLAKAAVDAGDLDKAAAQLQWVLDnakDPALKALARLR---------------LARVLLAQKKYDEALATLDAVKPEAF 158
|
90 100
....*....|....*....|...
gi 489915522 409 RYSAHMRQATLRARQGRIDDALA 431
Cdd:COG2976 159 AALYAELRGDILLAQGDKAEARA 181
|
|
| YfgM |
COG2976 |
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ... |
382-439 |
8.20e-03 |
|
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];
Pssm-ID: 442215 [Multi-domain] Cd Length: 207 Bit Score: 37.91 E-value: 8.20e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489915522 382 LLSRIAEDQGRYDEAIREL----GRIDDPAMRYSAHMRQATLRARQGRIDDALAMVDRADPQ 439
Cdd:COG2976 95 LLAKAAVDAGDLDKAAAQLqwvlDNAKDPALKALARLRLARVLLAQKKYDEALATLDAVKPE 156
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
275-357 |
8.53e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 36.91 E-value: 8.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489915522 275 DATRAQHQARAFINRNPDARklrLMLAGQIADGGDYDGALAELQAMSRRSPEDFDLMFMQAQLAYKAGRLDQARGYLQQY 354
Cdd:COG4235 35 EALAAYEKALRLDPDNADAL---LDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKL 111
|
...
gi 489915522 355 LDV 357
Cdd:COG4235 112 LAL 114
|
|
| |
