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Conserved domains on  [gi|489923759|ref|WP_003827104|]
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MULTISPECIES: radical SAM protein [Citrobacter]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK13745 super family cl36289
anaerobic sulfatase-maturation protein;
20-170 3.83e-24

anaerobic sulfatase-maturation protein;


The actual alignment was detected with superfamily member PRK13745:

Pssm-ID: 237489 [Multi-domain]  Cd Length: 412  Bit Score: 96.85  E-value: 3.83e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489923759  20 PVEVYRGLQQGNVRLVQFIPLVKH-----DG----------SGHLTDESVTSEAWGRFLITIFDIWVREDINQISIQLFD 84
Cdd:PRK13745 183 PLDFYHFFKELDCHYIQFAPIVERivshqDGrhlaslaqqeGGELAPFSVTPEQWGNFLCTIFDEWVKEDVGKYYIQLFD 262
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489923759  85 KTLRQW-------------CGLTAQIE----------------------RQTMSSM-----------------NTRCQTC 112
Cdd:PRK13745 263 STLANWvgeqpgvcsmakhCGHAGVMEfngdvyscdhfvfpeyklgniyQQTLVEMmyserqtafgtmkykslPTQCKEC 342
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489923759 113 SLFQYYHGDCPA--YCE----ENGKGVLCAGYQAFFSHTAPHMRVMRDLLKQHRSPMELMAMLR 170
Cdd:PRK13745 343 EYLFACHGECPKnrFCRtangEPGLNYLCKGYHQFFKHVAPYMDFMKKELMNQRPPANVMDAAK 406
 
Name Accession Description Interval E-value
PRK13745 PRK13745
anaerobic sulfatase-maturation protein;
20-170 3.83e-24

anaerobic sulfatase-maturation protein;


Pssm-ID: 237489 [Multi-domain]  Cd Length: 412  Bit Score: 96.85  E-value: 3.83e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489923759  20 PVEVYRGLQQGNVRLVQFIPLVKH-----DG----------SGHLTDESVTSEAWGRFLITIFDIWVREDINQISIQLFD 84
Cdd:PRK13745 183 PLDFYHFFKELDCHYIQFAPIVERivshqDGrhlaslaqqeGGELAPFSVTPEQWGNFLCTIFDEWVKEDVGKYYIQLFD 262
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489923759  85 KTLRQW-------------CGLTAQIE----------------------RQTMSSM-----------------NTRCQTC 112
Cdd:PRK13745 263 STLANWvgeqpgvcsmakhCGHAGVMEfngdvyscdhfvfpeyklgniyQQTLVEMmyserqtafgtmkykslPTQCKEC 342
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489923759 113 SLFQYYHGDCPA--YCE----ENGKGVLCAGYQAFFSHTAPHMRVMRDLLKQHRSPMELMAMLR 170
Cdd:PRK13745 343 EYLFACHGECPKnrFCRtangEPGLNYLCKGYHQFFKHVAPYMDFMKKELMNQRPPANVMDAAK 406
AslB COG0641
Sulfatase maturation enzyme AslB, radical SAM superfamily [Posttranslational modification, ...
8-144 6.38e-13

Sulfatase maturation enzyme AslB, radical SAM superfamily [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440406 [Multi-domain]  Cd Length: 349  Bit Score: 65.01  E-value: 6.38e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489923759   8 LNVVIDHQKCLQPVEVYRGLQQGNVRLVQFIPLVKHDGsghlTDESVTSEAWGRFLITIFDIWVREDINQISIQLFDKTL 87
Cdd:COG0641  155 IRCTVTRENLDDPEELYDFLKELGFRSIQFNPVVEEGE----ADYSLTPEDYGEFLIELFDEWLERDGGKIFVREFDILL 230
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489923759  88 RQW-------CGLT--------------------------------------------AQIERQTMSSMNTRCQTCSLFQ 116
Cdd:COG0641  231 AGLlppcsspCVGAggnylvvdpdgdiypcdefvgdpefrlgnvfdgslaelldspklRAFGREKNVLLDEECRSCPYLP 310
                        170       180       190
                 ....*....|....*....|....*....|....
gi 489923759 117 YYHGDCPAYC-EENGKG-----VLCAGYQAFFSH 144
Cdd:COG0641  311 LCGGGCPANRyAETGDGfkpysYYCELYKKLFEH 344
SPASM_anSME cd21120
Iron-sulfur cluster-binding SPASM domain of anaerobic sulfatase maturating enzyme; Anaerobic ...
103-147 1.18e-06

Iron-sulfur cluster-binding SPASM domain of anaerobic sulfatase maturating enzyme; Anaerobic sulfatase maturating enzyme (anSME) is a radical S-adenosylmethionine (SAM) enzyme that catalyzes, under anaerobic conditions, the co- or post-translational modification of arylsulfatases to form a catalytically essential formylglycine (FGly) residue to perform their hydrolysis function, removing sulfate groups from a wide array of substrates. Radical SAM enzymes are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster that is involved in the reductive cleavage of SAM and generates a 5'-deoxyadenosyl radical, which in turn abstracts a hydrogen from the appropriately positioned carbon atom of the substrate. Radical SAM (RS) enzymes with a C-terminal SPASM domain contain at least one other iron-sulfur cluster; anSME contains two auxillary 4Fe-4S clusters in its SPASM domain.


Pssm-ID: 410611 [Multi-domain]  Cd Length: 107  Bit Score: 44.96  E-value: 1.18e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 489923759 103 SSMNTRCQTCSLFQYYHGDCPAYCEENGKGV-----LCAGYQAFFSHTAP 147
Cdd:cd21120   58 FKLPAECKQCKYLFACHGGCPKHRFAKGPSEpglnyLCEGYKEFFEHLLP 107
 
Name Accession Description Interval E-value
PRK13745 PRK13745
anaerobic sulfatase-maturation protein;
20-170 3.83e-24

anaerobic sulfatase-maturation protein;


Pssm-ID: 237489 [Multi-domain]  Cd Length: 412  Bit Score: 96.85  E-value: 3.83e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489923759  20 PVEVYRGLQQGNVRLVQFIPLVKH-----DG----------SGHLTDESVTSEAWGRFLITIFDIWVREDINQISIQLFD 84
Cdd:PRK13745 183 PLDFYHFFKELDCHYIQFAPIVERivshqDGrhlaslaqqeGGELAPFSVTPEQWGNFLCTIFDEWVKEDVGKYYIQLFD 262
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489923759  85 KTLRQW-------------CGLTAQIE----------------------RQTMSSM-----------------NTRCQTC 112
Cdd:PRK13745 263 STLANWvgeqpgvcsmakhCGHAGVMEfngdvyscdhfvfpeyklgniyQQTLVEMmyserqtafgtmkykslPTQCKEC 342
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489923759 113 SLFQYYHGDCPA--YCE----ENGKGVLCAGYQAFFSHTAPHMRVMRDLLKQHRSPMELMAMLR 170
Cdd:PRK13745 343 EYLFACHGECPKnrFCRtangEPGLNYLCKGYHQFFKHVAPYMDFMKKELMNQRPPANVMDAAK 406
AslB COG0641
Sulfatase maturation enzyme AslB, radical SAM superfamily [Posttranslational modification, ...
8-144 6.38e-13

Sulfatase maturation enzyme AslB, radical SAM superfamily [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440406 [Multi-domain]  Cd Length: 349  Bit Score: 65.01  E-value: 6.38e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489923759   8 LNVVIDHQKCLQPVEVYRGLQQGNVRLVQFIPLVKHDGsghlTDESVTSEAWGRFLITIFDIWVREDINQISIQLFDKTL 87
Cdd:COG0641  155 IRCTVTRENLDDPEELYDFLKELGFRSIQFNPVVEEGE----ADYSLTPEDYGEFLIELFDEWLERDGGKIFVREFDILL 230
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489923759  88 RQW-------CGLT--------------------------------------------AQIERQTMSSMNTRCQTCSLFQ 116
Cdd:COG0641  231 AGLlppcsspCVGAggnylvvdpdgdiypcdefvgdpefrlgnvfdgslaelldspklRAFGREKNVLLDEECRSCPYLP 310
                        170       180       190
                 ....*....|....*....|....*....|....
gi 489923759 117 YYHGDCPAYC-EENGKG-----VLCAGYQAFFSH 144
Cdd:COG0641  311 LCGGGCPANRyAETGDGfkpysYYCELYKKLFEH 344
SPASM_anSME cd21120
Iron-sulfur cluster-binding SPASM domain of anaerobic sulfatase maturating enzyme; Anaerobic ...
103-147 1.18e-06

Iron-sulfur cluster-binding SPASM domain of anaerobic sulfatase maturating enzyme; Anaerobic sulfatase maturating enzyme (anSME) is a radical S-adenosylmethionine (SAM) enzyme that catalyzes, under anaerobic conditions, the co- or post-translational modification of arylsulfatases to form a catalytically essential formylglycine (FGly) residue to perform their hydrolysis function, removing sulfate groups from a wide array of substrates. Radical SAM enzymes are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster that is involved in the reductive cleavage of SAM and generates a 5'-deoxyadenosyl radical, which in turn abstracts a hydrogen from the appropriately positioned carbon atom of the substrate. Radical SAM (RS) enzymes with a C-terminal SPASM domain contain at least one other iron-sulfur cluster; anSME contains two auxillary 4Fe-4S clusters in its SPASM domain.


Pssm-ID: 410611 [Multi-domain]  Cd Length: 107  Bit Score: 44.96  E-value: 1.18e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 489923759 103 SSMNTRCQTCSLFQYYHGDCPAYCEENGKGV-----LCAGYQAFFSHTAP 147
Cdd:cd21120   58 FKLPAECKQCKYLFACHGGCPKHRFAKGPSEpglnyLCEGYKEFFEHLLP 107
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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