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Conserved domains on  [gi|489928111|ref|WP_003831441|]
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MULTISPECIES: cell division protein CpoB [Citrobacter]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 11484956)

tetratricopeptide repeat protein similar to cell division protein CpoB, which mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10803 PRK10803
tol-pal system protein YbgF; Provisional
 1-263 3.18e-137

tol-pal system protein YbgF; Provisional


:

Pssm-ID: 182745 [Multi-domain]  Cd Length: 263  Bit Score: 386.85  E-value: 3.18e-137
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489928111   1 MSSNFRHHLLSLSLLVGIAAPWAAFAQAPISSVGSGSVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQEN 80
Cdd:PRK10803   1 MSSNFRHHLLSLSLLVGVAAPWAAFAQAPISSVGSGSVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQEN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489928111  81 QYQLNQVVERQKQILLQMNNLGSGSAPAAQSAGGDQSGAAATPAPDAGAAAASGAPVQTGDANTDYNAAIALVQDKSRQD 160
Cdd:PRK10803  81 QYQLNQVVERQKQIYLQIDSLSSGGAAAQSTSGDQSGAAASATPAADAGTANAGAPVQSGDANTDYNAAIALVQDKSRQD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489928111 161 DAIEAFQNFIKKYPDSTYLPNANYWLGQLNYNKGKKDDAAFYFASVVKNFPKSPKAADAMYKVGVIMQDKGDKEKAKAVY 240
Cdd:PRK10803 161 DAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVY 240

                        250       260
                 ....*....|....*....|...
gi 489928111 241 QQVITKYPGTDGAKQAQKRLGAM 263
Cdd:PRK10803 241 QQVIKKYPGTDGAKQAQKRLNAM 263
 
Name Accession Description Interval E-value
PRK10803 PRK10803
tol-pal system protein YbgF; Provisional
 1-263 3.18e-137

tol-pal system protein YbgF; Provisional


Pssm-ID: 182745 [Multi-domain]  Cd Length: 263  Bit Score: 386.85  E-value: 3.18e-137
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489928111   1 MSSNFRHHLLSLSLLVGIAAPWAAFAQAPISSVGSGSVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQEN 80
Cdd:PRK10803   1 MSSNFRHHLLSLSLLVGVAAPWAAFAQAPISSVGSGSVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQEN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489928111  81 QYQLNQVVERQKQILLQMNNLGSGSAPAAQSAGGDQSGAAATPAPDAGAAAASGAPVQTGDANTDYNAAIALVQDKSRQD 160
Cdd:PRK10803  81 QYQLNQVVERQKQIYLQIDSLSSGGAAAQSTSGDQSGAAASATPAADAGTANAGAPVQSGDANTDYNAAIALVQDKSRQD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489928111 161 DAIEAFQNFIKKYPDSTYLPNANYWLGQLNYNKGKKDDAAFYFASVVKNFPKSPKAADAMYKVGVIMQDKGDKEKAKAVY 240
Cdd:PRK10803 161 DAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVY 240

                        250       260
                 ....*....|....*....|...
gi 489928111 241 QQVITKYPGTDGAKQAQKRLGAM 263
Cdd:PRK10803 241 QQVIKKYPGTDGAKQAQKRLNAM 263
tol_pal_ybgF TIGR02795
tol-pal system protein YbgF; Members of this protein family are the product of one of seven ...
 144-260 8.29e-51

tol-pal system protein YbgF; Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.


Pssm-ID: 188247 [Multi-domain]  Cd Length: 117  Bit Score: 162.06  E-value: 8.29e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489928111  144 TDYNAAIALVQDKsRQDDAIEAFQNFIKKYPDSTYLPNANYWLGQLNYNKGKKDDAAFYFASVVKNFPKSPKAADAMYKV 223
Cdd:TIGR02795   2 AYYDAALLVLKAG-DYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGDYADAAKAFLAVVKKYPKSPKAPDALLKL 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 489928111  224 GVIMQDKGDKEKAKAVYQQVITKYPGTDGAKQAQKRL 260
Cdd:TIGR02795  81 GMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQKRL 117
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 158-263 3.11e-36

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 124.72  E-value: 3.11e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489928111 158 RQDDAIEAFQNFIKKYPDSTYLPNANYWLGQLNYNKGKKDDAAFYFASVVKNFPKSPKAADAMYKVGVIMQDKGDKEKAK 237
Cdd:COG1729    8 DYDEAIAAFKAFLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKLGLSYLELGDYDKAR 87

                         90       100
                 ....*....|....*....|....*.
gi 489928111 238 AVYQQVITKYPGTDGAKQAQKRLGAM 263
Cdd:COG1729   88 ATLEELIKKYPDSEAAKEARARLARL 113
TolA_bind_tri pfam16331
TolA binding protein trimerization; This is the N-terminal domain of the YbgF protein. YbgF ...
 37-108 1.68e-15

TolA binding protein trimerization; This is the N-terminal domain of the YbgF protein. YbgF binds to TolA. This domain mediates trimerization.


Pssm-ID: 435282 [Multi-domain]  Cd Length: 72  Bit Score: 69.15  E-value: 1.68e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489928111   37 SVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQMNNLGSGSAPA 108
Cdd:pfam16331   1 SLEDRLARLERILEARNQGLLELQQQLDDLQQEVRELRGQIEELQYQLEQLQERQRDLYLDLDERLRQLESA 72
BamD cd15830
BamD lipoprotein, a component of the beta-barrel assembly machinery; BamD, also called YfiO, ...
 154-241 5.59e-03

BamD lipoprotein, a component of the beta-barrel assembly machinery; BamD, also called YfiO, is part of the beta-barrel assembly machinery (BAM), which is essential for the folding and insertion of outer membrane proteins (OMPs) in the OM of Gram-negative bacteria. Transmembrane OMPs carry out important functions including nutrient and waste management, cell adhesion, and structural roles. The BAM complex is composed of the beta-barrel OMP BamA (also called Omp85/YaeT) and four lipoproteins BamBCDE. BamD is the only BAM lipoprotein required for viability. Both BamA and BamD are broadly distributed in Gram-negative bacteria, and may constitute the core of the BAM complex. BamD contains five Tetratricopeptide repeats (TPRs). The three TPRs at the N-terminus may participate in interaction with substrates, while the two TPRs in the C-terminus may be involved in binding with other BAM components.


Pssm-ID: 276939 [Multi-domain]  Cd Length: 213  Bit Score: 37.23  E-value: 5.59e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489928111 154 QDKSRQDDAIEAFQNFIKKYPDSTYLPNANYWLGQLN-------------YNKGKKDDAAFYFAS-VVKNFPKSPKAADA 219
Cdd:cd15830  106 RDQSYAREAFQDFKDLIQRYPNSEYATDAKQRMIYLRnrlaehelsiaryYLKRGAYIAAINRAEeVLENYPDTPATEEA 185

                         90       100
                 ....*....|....*....|..
gi 489928111 220 MYKVGVIMQDKGDKEKAKAVYQ 241
Cdd:cd15830  186 LARLEEAYLALGLTDLAEKYRK 207
 
Name Accession Description Interval E-value
PRK10803 PRK10803
tol-pal system protein YbgF; Provisional
 1-263 3.18e-137

tol-pal system protein YbgF; Provisional


Pssm-ID: 182745 [Multi-domain]  Cd Length: 263  Bit Score: 386.85  E-value: 3.18e-137
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489928111   1 MSSNFRHHLLSLSLLVGIAAPWAAFAQAPISSVGSGSVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQEN 80
Cdd:PRK10803   1 MSSNFRHHLLSLSLLVGVAAPWAAFAQAPISSVGSGSVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQEN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489928111  81 QYQLNQVVERQKQILLQMNNLGSGSAPAAQSAGGDQSGAAATPAPDAGAAAASGAPVQTGDANTDYNAAIALVQDKSRQD 160
Cdd:PRK10803  81 QYQLNQVVERQKQIYLQIDSLSSGGAAAQSTSGDQSGAAASATPAADAGTANAGAPVQSGDANTDYNAAIALVQDKSRQD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489928111 161 DAIEAFQNFIKKYPDSTYLPNANYWLGQLNYNKGKKDDAAFYFASVVKNFPKSPKAADAMYKVGVIMQDKGDKEKAKAVY 240
Cdd:PRK10803 161 DAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVY 240

                        250       260
                 ....*....|....*....|...
gi 489928111 241 QQVITKYPGTDGAKQAQKRLGAM 263
Cdd:PRK10803 241 QQVIKKYPGTDGAKQAQKRLNAM 263
tol_pal_ybgF TIGR02795
tol-pal system protein YbgF; Members of this protein family are the product of one of seven ...
 144-260 8.29e-51

tol-pal system protein YbgF; Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.


Pssm-ID: 188247 [Multi-domain]  Cd Length: 117  Bit Score: 162.06  E-value: 8.29e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489928111  144 TDYNAAIALVQDKsRQDDAIEAFQNFIKKYPDSTYLPNANYWLGQLNYNKGKKDDAAFYFASVVKNFPKSPKAADAMYKV 223
Cdd:TIGR02795   2 AYYDAALLVLKAG-DYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGDYADAAKAFLAVVKKYPKSPKAPDALLKL 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 489928111  224 GVIMQDKGDKEKAKAVYQQVITKYPGTDGAKQAQKRL 260
Cdd:TIGR02795  81 GMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQKRL 117
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 158-263 3.11e-36

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 124.72  E-value: 3.11e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489928111 158 RQDDAIEAFQNFIKKYPDSTYLPNANYWLGQLNYNKGKKDDAAFYFASVVKNFPKSPKAADAMYKVGVIMQDKGDKEKAK 237
Cdd:COG1729    8 DYDEAIAAFKAFLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKLGLSYLELGDYDKAR 87

                         90       100
                 ....*....|....*....|....*.
gi 489928111 238 AVYQQVITKYPGTDGAKQAQKRLGAM 263
Cdd:COG1729   88 ATLEELIKKYPDSEAAKEARARLARL 113
BamD COG4105
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ...
 137-260 2.72e-16

Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443281 [Multi-domain]  Cd Length: 254  Bit Score: 76.07  E-value: 2.72e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489928111 137 VQTGDANTDYNAAIALVQDKsRQDDAIEAFQNFIKKYPDSTYLPNANYWLGQLNYNKGKKDDAAFYFASVVKNFPKSPKA 216
Cdd:COG4105   27 LKSWDAEELYEEAKEALEKG-DYEKAIKLFEELEPRYPGSPYAEQAQLMLAYAYYKQGDYEEAIAAADRFIKLYPNSPNA 105

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 489928111 217 ADAMYKVGVIMQDKGDK--------EKAKAVYQQVITKYPGTDGAKQAQKRL 260
Cdd:COG4105  106 DYAYYLRGLSYYEQSPDsdrdqtstRKAIEAFQELINRYPDSEYAEDAKKRI 157
TolA_bind_tri pfam16331
TolA binding protein trimerization; This is the N-terminal domain of the YbgF protein. YbgF ...
 37-108 1.68e-15

TolA binding protein trimerization; This is the N-terminal domain of the YbgF protein. YbgF binds to TolA. This domain mediates trimerization.


Pssm-ID: 435282 [Multi-domain]  Cd Length: 72  Bit Score: 69.15  E-value: 1.68e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489928111   37 SVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQMNNLGSGSAPA 108
Cdd:pfam16331   1 SLEDRLARLERILEARNQGLLELQQQLDDLQQEVRELRGQIEELQYQLEQLQERQRDLYLDLDERLRQLESA 72
BamD COG4105
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ...
 161-260 1.59e-13

Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443281 [Multi-domain]  Cd Length: 254  Bit Score: 68.37  E-value: 1.59e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489928111 161 DAIEAFQNFIKKYPDSTYLPNANYWLGQLN--------------YNKGKKDDAAFYFASVVKNFPKSPKAADAMYKVGVI 226
Cdd:COG4105  132 KAIEAFQELINRYPDSEYAEDAKKRIDELRdklarkelevaryyLKRGAYVAAINRFQNVLEDYPDTPAVEEALYLLVEA 211

                         90       100       110
                 ....*....|....*....|....*....|....
gi 489928111 227 MQDKGDKEKAKAVYQQVITKYPGTDGAKQAQKRL 260
Cdd:COG4105  212 YYALGRYDEAQDAAAVLGKNYPDSPYLKDAEKLL 245
OM_YfiO TIGR03302
outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a ...
 141-260 3.09e-09

outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274513 [Multi-domain]  Cd Length: 235  Bit Score: 55.64  E-value: 3.09e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489928111  141 DANTDYNAAIALVQDKsRQDDAIEAFQNFIKKYPDSTYLPNANYWLGQLNYNKGKKDDAAFYFASVVKNFPKSPKAADAM 220
Cdd:TIGR03302  32 PAEELYEEAKEALDSG-DYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 489928111  221 YKVGV--------IMQDKGDKEKAKAVYQQVITKYPGTDGAKQAQKRL 260
Cdd:TIGR03302 111 YLRGLsnynqidrVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRM 158
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 139-248 4.41e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 53.66  E-value: 4.41e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489928111 139 TGDANTDYNAAIALVQDKsRQDDAIEAFQNFIKKYPDStylPNANYWLGQLNYNKGKKDDAAFYFASVVKNFPKSPKAAD 218
Cdd:COG4783    1 AACAEALYALAQALLLAG-DYDEAEALLEKALELDPDN---PEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARL 76

                         90       100       110
                 ....*....|....*....|....*....|
gi 489928111 219 AMykvGVIMQDKGDKEKAKAVYQQVITKYP 248
Cdd:COG4783   77 NL---GLALLKAGDYDEALALLEKALKLDP 103
OM_YfiO TIGR03302
outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a ...
 154-249 6.14e-08

outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274513 [Multi-domain]  Cd Length: 235  Bit Score: 52.17  E-value: 6.14e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489928111  154 QDKSRQD-----DAIEAFQNFIKKYPDSTYLPNANYWL--------------GQLNYNKGKKDDAAFYFASVVKNFPKSP 214
Cdd:TIGR03302 121 IDRVDRDqtaarEAFEAFQELIRRYPNSEYAPDAKKRMdylrnrlagkelyvARFYLKRGAYVAAINRFQTVVENYPDTP 200

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 489928111  215 KAADAMYKVGVIMQDKGDKEKAKAVYQQVITKYPG 249
Cdd:TIGR03302 201 ATEEALARLVEAYLKLGLTDLAQDAAAVLGANYPD 235
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 143-248 1.54e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 49.42  E-value: 1.54e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489928111 143 NTDYNAAIALV-QDKSRQDDAIEAFQNFIKKYPDStylPNANYWLGQLNYNKGKKDDAAFYFASVVKNFPKSPkaaDAMY 221
Cdd:COG4783   37 NPEAFALLGEIlLQLGDLDEAIVLLHEALELDPDE---PEARLNLGLALLKAGDYDEALALLEKALKLDPEHP---EAYL 110

                         90       100
                 ....*....|....*....|....*..
gi 489928111 222 KVGVIMQDKGDKEKAKAVYQQVITKYP 248
Cdd:COG4783  111 RLARAYRALGRPDEAIAALEKALELDP 137
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
141-244 1.75e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 50.78  E-value: 1.75e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489928111 141 DANTDYNAAIALVQDKsRQDDAIEAFQNFIKKYPDstyLPNANYWLGQLNYNKGKKDDAAFYFASVVKnfpKSPKAADAM 220
Cdd:COG0457    7 DAEAYNNLGLAYRRLG-RYEEAIEDYEKALELDPD---DAEALYNLGLAYLRLGRYEEALADYEQALE---LDPDDAEAL 79

                         90       100
                 ....*....|....*....|....
gi 489928111 221 YKVGVIMQDKGDKEKAKAVYQQVI 244
Cdd:COG0457   80 NNLGLALQALGRYEEALEDYDKAL 103
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 142-256 1.93e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 50.88  E-value: 1.93e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489928111 142 ANTDYNAAIALVQDKsRQDDAIEAFQNFIKKYPDStylPNANYWLGQLNYNKGKKDDAAFYFASVVKnfpKSPKAADAMY 221
Cdd:COG2956    8 ALGWYFKGLNYLLNG-QPDKAIDLLEEALELDPET---VEAHLALGNLYRRRGEYDRAIRIHQKLLE---RDPDRAEALL 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 489928111 222 KVGVIMQDKGDKEKAKAVYQQVITKYPGTDGAKQA 256
Cdd:COG2956   81 ELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRL 115
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 160-249 2.13e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 50.88  E-value: 2.13e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489928111 160 DDAIEAFQNFIKKYPDStylPNANYWLGQLNYNKGKKDDAAFYFASVVKnfpKSPKAADAMYKVGVIMQDKGDKEKAKAV 239
Cdd:COG2956   59 DRAIRIHQKLLERDPDR---AEALLELAQDYLKAGLLDRAEELLEKLLE---LDPDDAEALRLLAEIYEQEGDWEKAIEV 132

                         90
                 ....*....|
gi 489928111 240 YQQVITKYPG 249
Cdd:COG2956  133 LERLLKLGPE 142
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
140-249 1.05e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 48.46  E-value: 1.05e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489928111 140 GDANTDYNAAIALVQdKSRQDDAIEAFQNFIKKYPDStylPNANYWLGQLNYNKGKKDDAAFYFASVVKnfpKSPKAADA 219
Cdd:COG0457   40 DDAEALYNLGLAYLR-LGRYEEALADYEQALELDPDD---AEALNNLGLALQALGRYEEALEDYDKALE---LDPDDAEA 112

                         90       100       110
                 ....*....|....*....|....*....|
gi 489928111 220 MYKVGVIMQDKGDKEKAKAVYQQVITKYPG 249
Cdd:COG0457  113 LYNLGLALLELGRYDEAIEAYERALELDPD 142
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 146-214 1.46e-06

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 44.63  E-value: 1.46e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489928111  146 YNAAIALVqDKSRQDDAIEAFQNFIKKYPDSTYLPNANYWLGQLNYNKGKKDDAAFYFASVVKNFPKSP 214
Cdd:pfam13432   1 LALARAAL-RAGDYDDAAAALEAALARFPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
154-248 3.16e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 44.39  E-value: 3.16e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489928111 154 QDKSRQDDAIEAFQNFIKKYPDStylPNANYWLGQLNYNKGKKDDAAFYFASVVKNfpksPKAADAMYKVGVIMQDKGDK 233
Cdd:COG3063    3 LKLGDLEEAEEYYEKALELDPDN---ADALNNLGLLLLEQGRYDEAIALEKALKLD----PNNAEALLNLAELLLELGDY 75

                         90
                 ....*....|....*
gi 489928111 234 EKAKAVYQQVITKYP 248
Cdd:COG3063   76 DEALAYLERALELDP 90
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 145-248 3.40e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 47.03  E-value: 3.40e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489928111 145 DYNAAIALV---QDKSRQDDAIEAFQNFIKKYPDstylpNANYW--LGQLNYNKGKKDDAAFYFASVVKnfpKSPKAADA 219
Cdd:COG2956  109 DAEALRLLAeiyEQEGDWEKAIEVLERLLKLGPE-----NAHAYceLAELYLEQGDYDEAIEALEKALK---LDPDCARA 180

                         90       100
                 ....*....|....*....|....*....
gi 489928111 220 MYKVGVIMQDKGDKEKAKAVYQQVITKYP 248
Cdd:COG2956  181 LLLLAELYLEQGDYEEAIAALERALEQDP 209
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
140-242 3.94e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 46.92  E-value: 3.94e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489928111 140 GDANTDYNAAIALvQDKSRQDDAIEAFQNFIKKYPDStylPNANYWLGQLNYNKGKKDDAAFYFASVVKnfpKSPKAADA 219
Cdd:COG0457   74 DDAEALNNLGLAL-QALGRYEEALEDYDKALELDPDD---AEALYNLGLALLELGRYDEAIEAYERALE---LDPDDADA 146

                         90       100
                 ....*....|....*....|...
gi 489928111 220 MYKVGVIMQDKGDKEKAKAVYQQ 242
Cdd:COG0457  147 LYNLGIALEKLGRYEEALELLEK 169
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 90-248 4.32e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 45.72  E-value: 4.32e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489928111  90 RQKQILLQMNNLGSGSAPAAQSAGGDQSGAAATPAPDAGAAAASGAPVQTGDANTDYNAAIALVQDKSRQDDAIEAFQNF 169
Cdd:COG5010    1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489928111 170 IKKYPDStylPNANYWLGQLNYNKGKKDDAAFYFASVVKNFPKSPkaaDAMYKVGVIMQDKGDKEKAKAVYQQVITKYP 248
Cdd:COG5010   81 LQLDPNN---PELYYNLALLYSRSGDKDEAKEYYEKALALSPDNP---NAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 158-260 5.37e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 44.61  E-value: 5.37e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489928111 158 RQDDAIEAFQNFIKKYPDStylPNANYWLGQLNYNKGKKDDAAFYFASVVKnfpKSPKAADAMYKVGVIMQDKGDKEKAK 237
Cdd:COG4235   32 RYDEALAAYEKALRLDPDN---ADALLDLAEALLAAGDTEEAEELLERALA---LDPDNPEALYLLGLAAFQQGDYAEAI 105

                         90       100
                 ....*....|....*....|...
gi 489928111 238 AVYQQVITKYPGTDGAKQAQKRL 260
Cdd:COG4235  106 AAWQKLLALLPADAPARLLEASI 128
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 161-248 8.16e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 44.23  E-value: 8.16e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489928111 161 DAIEAFQNFIKKYPDStylPNANYWLGQLNYNKGKKDDAAFYFASVVKNFPKSPkaaDAMYKVGVIMQDKGDKEKAKAVY 240
Cdd:COG4235    1 EAIARLRQALAANPND---AEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNA---DALLDLAEALLAAGDTEEAEELL 74


                 ....*...
gi 489928111 241 QQVITKYP 248
Cdd:COG4235   75 ERALALDP 82
TPR_6 pfam13174
Tetratricopeptide repeat;
218-250 2.04e-05

Tetratricopeptide repeat;


Pssm-ID: 463800 [Multi-domain]  Cd Length: 33  Bit Score: 40.53  E-value: 2.04e-05
                          10        20        30
                  ....*....|....*....|....*....|...
gi 489928111  218 DAMYKVGVIMQDKGDKEKAKAVYQQVITKYPGT 250
Cdd:pfam13174   1 DALLKLALAYLELGDTDEAKEALERLIKKYPDS 33
OM_YfiO TIGR03302
outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a ...
 160-261 2.63e-05

outer membrane assembly lipoprotein YfiO; Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274513 [Multi-domain]  Cd Length: 235  Bit Score: 44.08  E-value: 2.63e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489928111  160 DDAIEAFQNFIKKYPDSTYLPNANYWLGQLNYNKGKKDD-------AAF-YFASVVKNFPKSPKAADAMYKVGVIMQDKG 231
Cdd:TIGR03302  87 AEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDrdqtaarEAFeAFQELIRRYPNSEYAPDAKKRMDYLRNRLA 166

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 489928111  232 DKE--------KAKA------VYQQVITKYPGTDGAKQAQKRLG 261
Cdd:TIGR03302 167 GKElyvarfylKRGAyvaainRFQTVVENYPDTPATEEALARLV 210
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 137-251 2.79e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 44.33  E-value: 2.79e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489928111 137 VQTGDANTDYNAAIALVQdKSRQDDAIEAFQNFIKKYPDStylPNANYWLGQLNYNKGKKDDAAFYFASVVKnfpKSPKA 216
Cdd:COG2956  139 LGPENAHAYCELAELYLE-QGDYDEAIEALEKALKLDPDC---ARALLLLAELYLEQGDYEEAIAALERALE---QDPDY 211

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 489928111 217 ADAMYKVGVIMQDKGDKEKAKAVYQQVITKYPGTD 251
Cdd:COG2956  212 LPALPRLAELYEKLGDPEEALELLRKALELDPSDD 246
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 186-249 4.45e-05

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 40.78  E-value: 4.45e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489928111  186 LGQLNYNKGKKDDAAFYFASVVKNFPKSPKAADAMYKVGVIMQDKGDKEKAKAVYQQVITKYPG 249
Cdd:pfam13432   3 LARAALRAGDYDDAAAALEAALARFPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPG 66
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 76-249 6.14e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 43.83  E-value: 6.14e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489928111  76 QIQENQYQLNQVVERQKQILLQMNNLGSGSAPAAQSAGGDQSGAAATPAPDAGAAAASGAPVQTGDANTDYNAAIALvQD 155
Cdd:COG3914   12 LAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLL-QA 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489928111 156 KSRQDDAIEAFQNFIKKYPDStylPNANYWLGQLNYNKGKKDDAAFYFASVVKNfpkSPKAADAMYKVGVIMQDKGDKEK 235
Cdd:COG3914   91 LGRYEEALALYRRALALNPDN---AEALFNLGNLLLALGRLEEALAALRRALAL---NPDFAEAYLNLGEALRRLGRLEE 164

                        170
                 ....*....|....
gi 489928111 236 AKAVYQQVITKYPG 249
Cdd:COG3914  165 AIAALRRALELDPD 178
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 140-213 4.55e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 36.71  E-value: 4.55e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489928111 140 GDANTDYNAAIALVQDKsRQDDAIEAFQNFIKKYPDStylPNANYWLGQLNYNKGKKDDAAFYFASVVKNFPKS 213
Cdd:COG4783   70 DEPEARLNLGLALLKAG-DYDEALALLEKALKLDPEH---PEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
YfgM COG2976
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ...
 138-255 4.79e-03

Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];


Pssm-ID: 442215 [Multi-domain]  Cd Length: 207  Bit Score: 37.14  E-value: 4.79e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489928111 138 QTGDANTDYNAAIALVQdKSRQDDAIEAFQNFIKKYPDSTYLPNANYWLGQLNYNKGKKDDAAFYFASVVKNFP------ 211
Cdd:COG2976   49 QAEEASALYEQLLEALA-AGDAAAAAAAAEKLIDDYGGTAYAALAALLLAKAAVDAGDLDKAAAQLQWVLDNAKdpalka 127

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489928111 212 -------------KSPKAADAMYKV--------------GVIMQDKGDKEKAKAVYQQVITKYPGTDGAKQ 255
Cdd:COG2976  128 larlrlarvllaqKKYDEALATLDAvkpeafaalyaelrGDILLAQGDKAEARAAYQKALAALPEDAPLRQ 198
BamD cd15830
BamD lipoprotein, a component of the beta-barrel assembly machinery; BamD, also called YfiO, ...
 154-241 5.59e-03

BamD lipoprotein, a component of the beta-barrel assembly machinery; BamD, also called YfiO, is part of the beta-barrel assembly machinery (BAM), which is essential for the folding and insertion of outer membrane proteins (OMPs) in the OM of Gram-negative bacteria. Transmembrane OMPs carry out important functions including nutrient and waste management, cell adhesion, and structural roles. The BAM complex is composed of the beta-barrel OMP BamA (also called Omp85/YaeT) and four lipoproteins BamBCDE. BamD is the only BAM lipoprotein required for viability. Both BamA and BamD are broadly distributed in Gram-negative bacteria, and may constitute the core of the BAM complex. BamD contains five Tetratricopeptide repeats (TPRs). The three TPRs at the N-terminus may participate in interaction with substrates, while the two TPRs in the C-terminus may be involved in binding with other BAM components.


Pssm-ID: 276939 [Multi-domain]  Cd Length: 213  Bit Score: 37.23  E-value: 5.59e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489928111 154 QDKSRQDDAIEAFQNFIKKYPDSTYLPNANYWLGQLN-------------YNKGKKDDAAFYFAS-VVKNFPKSPKAADA 219
Cdd:cd15830  106 RDQSYAREAFQDFKDLIQRYPNSEYATDAKQRMIYLRnrlaehelsiaryYLKRGAYIAAINRAEeVLENYPDTPATEEA 185

                         90       100
                 ....*....|....*....|..
gi 489928111 220 MYKVGVIMQDKGDKEKAKAVYQ 241
Cdd:cd15830  186 LARLEEAYLALGLTDLAEKYRK 207
TPR_6 pfam13174
Tetratricopeptide repeat;
182-213 7.45e-03

Tetratricopeptide repeat;


Pssm-ID: 463800 [Multi-domain]  Cd Length: 33  Bit Score: 33.21  E-value: 7.45e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 489928111  182 ANYWLGQLNYNKGKKDDAAFYFASVVKNFPKS 213
Cdd:pfam13174   2 ALLKLALAYLELGDTDEAKEALERLIKKYPDS 33
BamD cd15830
BamD lipoprotein, a component of the beta-barrel assembly machinery; BamD, also called YfiO, ...
 146-260 8.16e-03

BamD lipoprotein, a component of the beta-barrel assembly machinery; BamD, also called YfiO, is part of the beta-barrel assembly machinery (BAM), which is essential for the folding and insertion of outer membrane proteins (OMPs) in the OM of Gram-negative bacteria. Transmembrane OMPs carry out important functions including nutrient and waste management, cell adhesion, and structural roles. The BAM complex is composed of the beta-barrel OMP BamA (also called Omp85/YaeT) and four lipoproteins BamBCDE. BamD is the only BAM lipoprotein required for viability. Both BamA and BamD are broadly distributed in Gram-negative bacteria, and may constitute the core of the BAM complex. BamD contains five Tetratricopeptide repeats (TPRs). The three TPRs at the N-terminus may participate in interaction with substrates, while the two TPRs in the C-terminus may be involved in binding with other BAM components.


Pssm-ID: 276939 [Multi-domain]  Cd Length: 213  Bit Score: 36.46  E-value: 8.16e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489928111 146 YNAAIALVQDKsRQDDAIEAFQNFIKKYPDSTYLPNANYWLGQLNYNKGKKDDAAFYFASVVKNFPKSPKAADAMYKVGV 225
Cdd:cd15830    7 YEKAQTALQKG-NYDGAIKYLEALDSRYPFGPYAEQAQLDLIYAYYKNADYELALASAERFIRLYPRHPNIDYVYYMRGL 85

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 489928111 226 I--MQDKG-------------DKEKAKAVYQQ---VITKYPGTDGAKQAQKRL 260
Cdd:cd15830   86 SnyKLDRSflqrffpidrsdrDQSYAREAFQDfkdLIQRYPNSEYATDAKQRM 138
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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