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Conserved domains on  [gi|489930736|ref|WP_003834056|]
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MULTISPECIES: flagellar type III secretion system pore protein FliP [Citrobacter]

Protein Classification

flagellar type III secretion system pore protein FliP( domain architecture ID 10003557)

flagellar type III secretion system pore protein FliP plays a role in the flagellum-specific transport system

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FliP COG1338
Flagellar biosynthesis protein FliP [Cell motility];
2-244 6.18e-136

Flagellar biosynthesis protein FliP [Cell motility];


:

Pssm-ID: 440949  Cd Length: 249  Bit Score: 382.15  E-value: 6.18e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489930736   2 RRLLSLTLAGLWLFSPVALAQ--LPGLVSQPL-PGGGQNWTLPVQTLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNAL 78
Cdd:COG1338    4 RLLALLLLLALLLLPAPALAQpgLPSLSLTLGgAGGGQTYSLSLQILLLLTVLSLAPAILLMMTSFTRIIIVLSFLRQAL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489930736  79 GTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEAMEKGAQPLREFMLRQTREADLALFARLANSGP 158
Cdd:COG1338   84 GTQQTPPNQVLIGLALFLTFFVMAPVFDQIYDDALQPYLAGEITQEEALERASEPLREFMLKQTREKDLALFADLAGEPP 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489930736 159 LQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGS 238
Cdd:COG1338  164 PETPEDVPLRVLIPAFVISELKTAFQIGFLIFLPFLVIDLVVASVLMSMGMMMLPPVMISLPFKLLLFVLVDGWNLLVGS 243


                 ....*.
gi 489930736 239 LAQSFY 244
Cdd:COG1338  244 LVRSFG 249
 
Name Accession Description Interval E-value
FliP COG1338
Flagellar biosynthesis protein FliP [Cell motility];
2-244 6.18e-136

Flagellar biosynthesis protein FliP [Cell motility];


Pssm-ID: 440949  Cd Length: 249  Bit Score: 382.15  E-value: 6.18e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489930736   2 RRLLSLTLAGLWLFSPVALAQ--LPGLVSQPL-PGGGQNWTLPVQTLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNAL 78
Cdd:COG1338    4 RLLALLLLLALLLLPAPALAQpgLPSLSLTLGgAGGGQTYSLSLQILLLLTVLSLAPAILLMMTSFTRIIIVLSFLRQAL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489930736  79 GTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEAMEKGAQPLREFMLRQTREADLALFARLANSGP 158
Cdd:COG1338   84 GTQQTPPNQVLIGLALFLTFFVMAPVFDQIYDDALQPYLAGEITQEEALERASEPLREFMLKQTREKDLALFADLAGEPP 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489930736 159 LQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGS 238
Cdd:COG1338  164 PETPEDVPLRVLIPAFVISELKTAFQIGFLIFLPFLVIDLVVASVLMSMGMMMLPPVMISLPFKLLLFVLVDGWNLLVGS 243


                 ....*.
gi 489930736 239 LAQSFY 244
Cdd:COG1338  244 LVRSFG 249
fliP PRK05699
flagellar biosynthesis protein FliP; Reviewed
 1-244 2.09e-130

flagellar biosynthesis protein FliP; Reviewed


Pssm-ID: 235566  Cd Length: 245  Bit Score: 367.98  E-value: 2.09e-130
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489930736   1 MRRLLSLTLAGLWLFSPVALAQLPGLVSQPLPGGGQNWTLPVQTLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNALGT 80
Cdd:PRK05699   2 MRRLLALALLLLALASAAAAAPLPGLNLLPGANGGQEYSLSLQLLLLLTVLSLAPAILLMMTSFTRIIIVLSLLRQALGT 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489930736  81 PSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEAMEKGAQPLREFMLRQTREADLALFARLANSGPlQ 160
Cdd:PRK05699  82 QQTPPNQVLIGLALFLTFFIMSPVFDKIYDDAIQPYLDEKITLEEALERAAAPLREFMLKQTREKDLALFAKLAGEPP-K 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489930736 161 GPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLA 240
Cdd:PRK05699 161 TPEDVPLSVLVPAFVLSELKTAFQIGFLIFLPFLIIDLVVASVLMSMGMMMLPPVIISLPFKLLLFVLVDGWNLLVGSLV 240


                 ....
gi 489930736 241 QSFY 244
Cdd:PRK05699 241 QSFG 244
FliP pfam00813
FliP family;
48-239 3.80e-110

FliP family;


Pssm-ID: 425882  Cd Length: 191  Bit Score: 314.74  E-value: 3.80e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489930736   48 ITSLTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEAM 127
Cdd:pfam00813   1 LTVLSLAPAILIMMTSFTRIVIVLSFLRNALGTQQTPPNQVLIGLALFLTFFIMAPVFQQIYEDALQPYLAGEITQEEAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489930736  128 EKGAQPLREFMLRQTREADLALFARLANSGPlQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMAL 207
Cdd:pfam00813  81 ERASEPLREFMLKQTREKDLALFLDLAGQWP-ETAEDVPLTVLIPAFVISELKTAFQIGFLIYLPFLVIDLVVASVLMSM 159

                         170       180       190
                  ....*....|....*....|....*....|..
gi 489930736  208 GMMMVPPATIALPFKLMLFVLVDGWQLLVGSL 239
Cdd:pfam00813 160 GMMMLPPVTISLPFKLLLFVLVDGWTLLVGSL 191
fliP TIGR01103
flagellar biosynthetic protein FliP; This model describes bacterial flagellar biogenesis ...
 47-243 5.76e-104

flagellar biosynthetic protein FliP; This model describes bacterial flagellar biogenesis protein fliP, which is one of the genes in motility locus on the bacterial chromosome that is involved in structure and function of bacterial flagellum. It was demonstrated that mutants in fliP locus were non-flagellated and non-motile, while revertants were flagellated and motile. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 211625  Cd Length: 197  Bit Score: 299.30  E-value: 5.76e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489930736   47 FITSLTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEA 126
Cdd:TIGR01103   1 LLTVLSLAPAILIMMTSFTRIVIVLSILRSALGLQSTPPNQVLLGLALFLTFFVMAPTFDRIYDDAYQPLLDNQISEQEA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489930736  127 MEKGAQPLREFMLRQTREADLALFARLANSGPLQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMA 206
Cdd:TIGR01103  81 YQKAEEPLREFMLRQTRDKDLALFMRLAKIPKPQTPEAVPLRVLVPAFMLSELKTAFQIGFLIFIPFLIIDLVVASVLMA 160

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 489930736  207 LGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243
Cdd:TIGR01103 161 MGMMMLPPVMISLPFKLMLFVLVDGWNLLVGSLVQSF 197
 
Name Accession Description Interval E-value
FliP COG1338
Flagellar biosynthesis protein FliP [Cell motility];
2-244 6.18e-136

Flagellar biosynthesis protein FliP [Cell motility];


Pssm-ID: 440949  Cd Length: 249  Bit Score: 382.15  E-value: 6.18e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489930736   2 RRLLSLTLAGLWLFSPVALAQ--LPGLVSQPL-PGGGQNWTLPVQTLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNAL 78
Cdd:COG1338    4 RLLALLLLLALLLLPAPALAQpgLPSLSLTLGgAGGGQTYSLSLQILLLLTVLSLAPAILLMMTSFTRIIIVLSFLRQAL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489930736  79 GTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEAMEKGAQPLREFMLRQTREADLALFARLANSGP 158
Cdd:COG1338   84 GTQQTPPNQVLIGLALFLTFFVMAPVFDQIYDDALQPYLAGEITQEEALERASEPLREFMLKQTREKDLALFADLAGEPP 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489930736 159 LQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGS 238
Cdd:COG1338  164 PETPEDVPLRVLIPAFVISELKTAFQIGFLIFLPFLVIDLVVASVLMSMGMMMLPPVMISLPFKLLLFVLVDGWNLLVGS 243


                 ....*.
gi 489930736 239 LAQSFY 244
Cdd:COG1338  244 LVRSFG 249
fliP PRK05699
flagellar biosynthesis protein FliP; Reviewed
 1-244 2.09e-130

flagellar biosynthesis protein FliP; Reviewed


Pssm-ID: 235566  Cd Length: 245  Bit Score: 367.98  E-value: 2.09e-130
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489930736   1 MRRLLSLTLAGLWLFSPVALAQLPGLVSQPLPGGGQNWTLPVQTLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNALGT 80
Cdd:PRK05699   2 MRRLLALALLLLALASAAAAAPLPGLNLLPGANGGQEYSLSLQLLLLLTVLSLAPAILLMMTSFTRIIIVLSLLRQALGT 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489930736  81 PSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEAMEKGAQPLREFMLRQTREADLALFARLANSGPlQ 160
Cdd:PRK05699  82 QQTPPNQVLIGLALFLTFFIMSPVFDKIYDDAIQPYLDEKITLEEALERAAAPLREFMLKQTREKDLALFAKLAGEPP-K 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489930736 161 GPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLA 240
Cdd:PRK05699 161 TPEDVPLSVLVPAFVLSELKTAFQIGFLIFLPFLIIDLVVASVLMSMGMMMLPPVIISLPFKLLLFVLVDGWNLLVGSLV 240


                 ....
gi 489930736 241 QSFY 244
Cdd:PRK05699 241 QSFG 244
PRK12430 PRK12430
putative bifunctional flagellar biosynthesis protein FliO/FliP; Provisional
 12-244 6.48e-122

putative bifunctional flagellar biosynthesis protein FliO/FliP; Provisional


Pssm-ID: 237101 [Multi-domain]  Cd Length: 379  Bit Score: 351.88  E-value: 6.48e-122
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489930736  12 LWLFSPVALAQLPGLVSQPLPGGGQNWTLPVQTLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLG 91
Cdd:PRK12430 146 LLLFCPSAYADIPGLTSHILDDGSQTWSVPVQTLVFLTSLTFLPAFLLMMTSFTRIVIVFGLLRNALGTPYAPPNQILLG 225

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489930736  92 LALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEAMEKGAQPLREFMLRQTREADLALFARLANSGPLQGPEAVPMRILL 171
Cdd:PRK12430 226 LALFLTFFIMSPTFDKIYKDAYLPFSQEKINMDDAILKGAMPLKKFMLNQTRTPDLELFSKLAHISSYKNKNEIPMRILL 305

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489930736 172 PAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSFY 244
Cdd:PRK12430 306 PSFITSELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPSTISLPFKLMLFVLVDGWQLLITSLAHSFN 378
FliP pfam00813
FliP family;
48-239 3.80e-110

FliP family;


Pssm-ID: 425882  Cd Length: 191  Bit Score: 314.74  E-value: 3.80e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489930736   48 ITSLTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEAM 127
Cdd:pfam00813   1 LTVLSLAPAILIMMTSFTRIVIVLSFLRNALGTQQTPPNQVLIGLALFLTFFIMAPVFQQIYEDALQPYLAGEITQEEAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489930736  128 EKGAQPLREFMLRQTREADLALFARLANSGPlQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMAL 207
Cdd:pfam00813  81 ERASEPLREFMLKQTREKDLALFLDLAGQWP-ETAEDVPLTVLIPAFVISELKTAFQIGFLIYLPFLVIDLVVASVLMSM 159

                         170       180       190
                  ....*....|....*....|....*....|..
gi 489930736  208 GMMMVPPATIALPFKLMLFVLVDGWQLLVGSL 239
Cdd:pfam00813 160 GMMMLPPVTISLPFKLLLFVLVDGWTLLVGSL 191
fliP TIGR01103
flagellar biosynthetic protein FliP; This model describes bacterial flagellar biogenesis ...
 47-243 5.76e-104

flagellar biosynthetic protein FliP; This model describes bacterial flagellar biogenesis protein fliP, which is one of the genes in motility locus on the bacterial chromosome that is involved in structure and function of bacterial flagellum. It was demonstrated that mutants in fliP locus were non-flagellated and non-motile, while revertants were flagellated and motile. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 211625  Cd Length: 197  Bit Score: 299.30  E-value: 5.76e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489930736   47 FITSLTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEA 126
Cdd:TIGR01103   1 LLTVLSLAPAILIMMTSFTRIVIVLSILRSALGLQSTPPNQVLLGLALFLTFFVMAPTFDRIYDDAYQPLLDNQISEQEA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489930736  127 MEKGAQPLREFMLRQTREADLALFARLANSGPLQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMA 206
Cdd:TIGR01103  81 YQKAEEPLREFMLRQTRDKDLALFMRLAKIPKPQTPEAVPLRVLVPAFMLSELKTAFQIGFLIFIPFLIIDLVVASVLMA 160

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 489930736  207 LGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243
Cdd:TIGR01103 161 MGMMMLPPVMISLPFKLMLFVLVDGWNLLVGSLVQSF 197
EscR COG4790
Type III secretory pathway, EscR/YscR component [Intracellular trafficking, secretion, and ...
 41-243 1.87e-72

Type III secretory pathway, EscR/YscR component [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443819  Cd Length: 216  Bit Score: 220.05  E-value: 1.87e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489930736  41 PVQTLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIY--VDAYQPFSE 118
Cdd:COG4790    7 PLSLILLLALLSLLPFLVVMGTSFLKISVVLSLLRNALGVQQVPPNMVLNGIALILTLFVMAPVGQEIYdrLQAAPVDFS 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489930736 119 EKISMQEAMEKGAQPLREFMLRQTREADLALFARLA-NSGPLQGPEAVP---MRILLPAYVTSELKTAFQIGFTIFIPFL 194
Cdd:COG4790   87 SSASVLEAVDAGLEPLRDFLKKNTDPEERAFFLDAAqRLWPEEYAAKLKpddLLVLLPAFVLSELTSAFKIGFLLYLPFV 166

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 489930736 195 IIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243
Cdd:COG4790  167 VIDLVVSNILLALGMMMVSPMTISLPFKLLLFVLVDGWTLLLHGLVLSY 215
PRK12797 PRK12797
type III secretion system protein YscR; Provisional
 41-239 1.07e-61

type III secretion system protein YscR; Provisional


Pssm-ID: 237210  Cd Length: 213  Bit Score: 192.78  E-value: 1.07e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489930736  41 PVQTLVFITSLTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIY--VDAYQPFSE 118
Cdd:PRK12797   7 PLQLIILLALLSLLPLIAVMGTSFLKISVVLSLLRNALGVQQVPPNMALYGLALILTLFVMAPVGLAIQdrLQQPPLSLQ 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489930736 119 EKISMQEAMEKGAQPLREFMLRQTREADLALFARLANSgpLQGPEAVP------MRILLPAYVTSELKTAFQIGFTIFIP 192
Cdd:PRK12797  87 DPDSVLQLLDAALAPLRDFLKKHTDERERTFFVRSAQR--IWPEEAADslkkddLLILIPAFTLSELTRAFEIGFLLYLP 164

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 489930736 193 FLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSL 239
Cdd:PRK12797 165 FIVIDLIISNILLAMGMMMVSPTTISLPFKLLLFVLVDGWSRLLHGL 211
fliP PRK12783
flagellar biosynthesis protein FliP; Reviewed
 1-244 1.12e-58

flagellar biosynthesis protein FliP; Reviewed


Pssm-ID: 171720  Cd Length: 255  Bit Score: 186.23  E-value: 1.12e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489930736   1 MRRLLSLTLAGLW--LFSPVALAQ-------LPGLVSQPLPGGGQNWTLPVQTLVFITSLTFLPAILLMMTSFTRIIIVF 71
Cdd:PRK12783   1 MKRARAILVLALAagLTASAALAQgaggvtgVPGLDALLPPGNGAASGRIIQLVALLTVLSLAPGLLVMVTSFTRFAVAL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489930736  72 GLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEAMEKGAQPLREFMLRQTREADLALFA 151
Cdd:PRK12783  81 SFLRSGLGLQSTPANLFLVSLALFMTFYVMAPTFDRAWNEGVKPLQENRISEEEAFGKIVDPFREFMTQHVRPKDLQTFT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489930736 152 RLANSGPLQGP--EAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLV 229
Cdd:PRK12783 161 DLASRSFPKAEagEKIDLRILIPAFMISELRRGFEIGFLIVLPFLVIDMIVATIVMSMGMMMLPPTVISLPFKVLFFVLI 240

                        250
                 ....*....|....*
gi 489930736 230 DGWQLLVGSLAQSFY 244
Cdd:PRK12783 241 DGWNLLVSGLVRSFF 255
yscR TIGR01102
type III secretion apparatus protein, YscR/HrcR family; This model identifies the generic ...
 45-239 6.61e-54

type III secretion apparatus protein, YscR/HrcR family; This model identifies the generic virulence translocation proteins in bacteria. It derives its name:'Yop' from Yersinia enterocolitica species, where this virulence protein was identified. In bacterial pathogenesis, Yop effector proteins are translocated into the eukaryotic cells. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 130172  Cd Length: 202  Bit Score: 172.53  E-value: 6.61e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489930736   45 LVFITSLTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIdkiyVDAYQPFSEEKISM- 123
Cdd:TIGR01102   2 IAVLAALSLLPFIIVVGTSFLKISVVLGILRNALGVQQVPPNMALYGIALILSMFVMAPVG----HQAQDRFHQEPVAYs 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489930736  124 -----QEAMEKGAQPLREFMLRQTREADLALFARLANSgpLQGPE------AVPMRILLPAYVTSELKTAFQIGFTIFIP 192
Cdd:TIGR01102  78 nidflQKSLDAGLAPYREFLKKNTDEDEVAFFERSTQK--MWPKEmadrlkKDSLLILLPAFTLSELTAAFKIGFLLYLP 155

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 489930736  193 FLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSL 239
Cdd:TIGR01102 156 FIVIDLIVSNILLALGMMMVSPMTISLPFKLLLFVLIDGWSRLLHGL 202
PRK09617 PRK09617
type III secretion system protein; Reviewed
 46-243 3.34e-50

type III secretion system protein; Reviewed


Pssm-ID: 236593  Cd Length: 243  Bit Score: 164.15  E-value: 3.34e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489930736  46 VFITSLTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDAYQPF--------- 116
Cdd:PRK09617  30 VILIFLALSPFLVMLLTSFLKIIIVLSLLRNALGVQQTPPSQVLNGIALILSIYIMFPTGVAMYNDAQKGIesnavprsl 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489930736 117 --SEEKISMQEAMEKGAQPLREFMLRQTREADLALFARLANSG-PLQGPEAVP---MRILLPAYVTSELKTAFQIGFTIF 190
Cdd:PRK09617 110 fsAEGAETVFVAANKSKEPLRSFLIKNTPKPQIASFYKISQKTfPPEIRDALTpsdFMIIIPAFIMGQLKNAFEIGVLIY 189

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 489930736 191 IPFLIIDLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSF 243
Cdd:PRK09617 190 LPFFVIDLVTANVLLAMGMMMLSPLSISLPLKLLLVVMVDGWTLLLEGLMISF 242
spaP PRK12796
EscR/YscR/HrcR family type III secretion system export apparatus protein;
52-235 4.61e-41

EscR/YscR/HrcR family type III secretion system export apparatus protein;


Pssm-ID: 237209  Cd Length: 221  Bit Score: 140.12  E-value: 4.61e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489930736  52 TFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMSPVIDKIYVDayqpFSEEKISMQEA----- 126
Cdd:PRK12796  15 TLLPFIIASGTCFIKFSIVFVMVRNALGLQQVPSNMTLNGIALLLSMFVMMPVIQDIYVY----FQNEPVDFNNIasvvk 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489930736 127 -MEKGAQPLREFMLRQTrEADLALF---ARLANSGPLQGPEA------VPMRILLPAYVTSELKTAFQIGFTIFIPFLII 196
Cdd:PRK12796  91 fVDEGLGGYRDYLIKYS-DPELVRFferAQKKRSYGDEAEANdhdkdeISLFSLLPAYALSEIKSAFKIGFYLYLPFVVV 169

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 489930736 197 DLVIASVLMALGMMMVPPATIALPFKLMLFVLVDGWQLL 235
Cdd:PRK12796 170 DLVVSSVLLALGMMMMSPVTISVPIKLILFVAMDGWTLL 208
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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