NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|489930819|ref|WP_003834139|]
View 

MULTISPECIES: glycerol dehydratase reactivase beta/small subunit family protein [Citrobacter]

Protein Classification

glycerol dehydratase reactivase beta/small subunit family protein( domain architecture ID 10491635)

glycerol dehydratase reactivase beta/small subunit family protein similar to the beta or small subunit of Klebsiella pneumoniae glycerol dehydratase reactivase and Klebsiella oxytoca diol dehydratase-reactivating factor small subunit

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Dehydratase_MU pfam02288
Dehydratase medium subunit; This family contains the medium subunit of the trimeric diol ...
 8-111 4.34e-42

Dehydratase medium subunit; This family contains the medium subunit of the trimeric diol dehydratases and glycerol dehydratases. These enzymes are produced by some enterobacteria in response to growth substances.


:

Pssm-ID: 426702  Cd Length: 108  Bit Score: 133.86  E-value: 4.34e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489930819    8 PAIVIFTSADC--ADVWNDVLLGIEEEGIPFVIQESSSTDVIHNAWLAACQSPLLVGIGC-SREKLVVHYKNLPTSAPLF 84
Cdd:pfam02288   1 PAIGVYVSDTIehAEVLREVLAGIEEEGVPYRVVVSRTSDVVFLAHQAAKLSGLGVGIGIqSKGTVVIHQKDLPPLSPLE 80

                          90       100
                  ....*....|....*....|....*...
gi 489930819   85 TLTY-QQNSHDRRSIGNNAARLVKGIPF 111
Cdd:pfam02288  81 LFPQpLLDPETLRAIGANAARLVKGEPF 108
 
Name Accession Description Interval E-value
Dehydratase_MU pfam02288
Dehydratase medium subunit; This family contains the medium subunit of the trimeric diol ...
 8-111 4.34e-42

Dehydratase medium subunit; This family contains the medium subunit of the trimeric diol dehydratases and glycerol dehydratases. These enzymes are produced by some enterobacteria in response to growth substances.


Pssm-ID: 426702  Cd Length: 108  Bit Score: 133.86  E-value: 4.34e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489930819    8 PAIVIFTSADC--ADVWNDVLLGIEEEGIPFVIQESSSTDVIHNAWLAACQSPLLVGIGC-SREKLVVHYKNLPTSAPLF 84
Cdd:pfam02288   1 PAIGVYVSDTIehAEVLREVLAGIEEEGVPYRVVVSRTSDVVFLAHQAAKLSGLGVGIGIqSKGTVVIHQKDLPPLSPLE 80

                          90       100
                  ....*....|....*....|....*...
gi 489930819   85 TLTY-QQNSHDRRSIGNNAARLVKGIPF 111
Cdd:pfam02288  81 LFPQpLLDPETLRAIGANAARLVKGEPF 108
pduD PRK15042
propanediol/glycerol family dehydratase medium subunit;
19-108 6.20e-11

propanediol/glycerol family dehydratase medium subunit;


Pssm-ID: 237886  Cd Length: 219  Bit Score: 56.98  E-value: 6.20e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489930819  19 ADVWNDVLLGIEEEGIPF-VIQESSSTDVIHNAWLAACQSPLLVGIGC-SREKLVVHYKNLP--------TSAPLFTL-T 87
Cdd:PRK15042  80 KEILREVIAGIEEEGLKArVVRVFRTSDVAFVAVEGARLSGSGIGIGIqSKGTTVIHQKDLPplsnlelfPQAPLLTLeT 159

                         90       100
                 ....*....|....*....|.
gi 489930819  88 YqqnshdrRSIGNNAARLVKG 108
Cdd:PRK15042 160 Y-------RAIGKNAARYAKG 173
 
Name Accession Description Interval E-value
Dehydratase_MU pfam02288
Dehydratase medium subunit; This family contains the medium subunit of the trimeric diol ...
 8-111 4.34e-42

Dehydratase medium subunit; This family contains the medium subunit of the trimeric diol dehydratases and glycerol dehydratases. These enzymes are produced by some enterobacteria in response to growth substances.


Pssm-ID: 426702  Cd Length: 108  Bit Score: 133.86  E-value: 4.34e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489930819    8 PAIVIFTSADC--ADVWNDVLLGIEEEGIPFVIQESSSTDVIHNAWLAACQSPLLVGIGC-SREKLVVHYKNLPTSAPLF 84
Cdd:pfam02288   1 PAIGVYVSDTIehAEVLREVLAGIEEEGVPYRVVVSRTSDVVFLAHQAAKLSGLGVGIGIqSKGTVVIHQKDLPPLSPLE 80

                          90       100
                  ....*....|....*....|....*...
gi 489930819   85 TLTY-QQNSHDRRSIGNNAARLVKGIPF 111
Cdd:pfam02288  81 LFPQpLLDPETLRAIGANAARLVKGEPF 108
pduD PRK15042
propanediol/glycerol family dehydratase medium subunit;
19-108 6.20e-11

propanediol/glycerol family dehydratase medium subunit;


Pssm-ID: 237886  Cd Length: 219  Bit Score: 56.98  E-value: 6.20e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489930819  19 ADVWNDVLLGIEEEGIPF-VIQESSSTDVIHNAWLAACQSPLLVGIGC-SREKLVVHYKNLP--------TSAPLFTL-T 87
Cdd:PRK15042  80 KEILREVIAGIEEEGLKArVVRVFRTSDVAFVAVEGARLSGSGIGIGIqSKGTTVIHQKDLPplsnlelfPQAPLLTLeT 159

                         90       100
                 ....*....|....*....|.
gi 489930819  88 YqqnshdrRSIGNNAARLVKG 108
Cdd:PRK15042 160 Y-------RAIGKNAARYAKG 173
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH