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Conserved domains on  [gi|489957397|ref|WP_003860704|]
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MULTISPECIES: YfhL family 4Fe-4S dicluster ferredoxin [Enterobacter]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
di_4Fe-4S_YfhL NF033683
YfhL family 4Fe-4S dicluster ferredoxin;
1-80 6.22e-48

YfhL family 4Fe-4S dicluster ferredoxin;


:

Pssm-ID: 468141 [Multi-domain]  Cd Length: 79  Bit Score: 146.47  E-value: 6.22e-48
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489957397  1 MALLITKKCINCDMCEPECPNEAISMGDSIYEINSDRCTECIGHYETPTCQKVCPIpNTILKDPAHVENEEQLWDKFVLM 80
Cdd:NF033683  1 MALLITDECINCDVCEPECPNEAISMGDEIYEIDPDRCTECVGHYDEPQCVQVCPV-DCIIPDPDHVETQEQLMEKYERL 79
 
Name Accession Description Interval E-value
di_4Fe-4S_YfhL NF033683
YfhL family 4Fe-4S dicluster ferredoxin;
1-80 6.22e-48

YfhL family 4Fe-4S dicluster ferredoxin;


Pssm-ID: 468141 [Multi-domain]  Cd Length: 79  Bit Score: 146.47  E-value: 6.22e-48
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489957397  1 MALLITKKCINCDMCEPECPNEAISMGDSIYEINSDRCTECIGHYETPTCQKVCPIpNTILKDPAHVENEEQLWDKFVLM 80
Cdd:NF033683  1 MALLITDECINCDVCEPECPNEAISMGDEIYEIDPDRCTECVGHYDEPQCVQVCPV-DCIIPDPDHVETQEQLMEKYERL 79
COG2768 COG2768
Uncharacterized Fe-S cluster protein [Function unknown];
1-55 3.66e-11

Uncharacterized Fe-S cluster protein [Function unknown];


Pssm-ID: 442050 [Multi-domain]  Cd Length: 74  Bit Score: 53.58  E-value: 3.66e-11
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*
gi 489957397  1 MALLITKKCINCDMCEPECPNEAISMGDSIYEINSDRCTECighyetPTCQKVCP 55
Cdd:COG2768   5 KPYVDEEKCIGCGACVKVCPVGAISIEDGKAVIDPEKCIGC------GACIEVCP 53
PRK07118 PRK07118
Fe-S cluster domain-containing protein;
9-55 3.90e-06

Fe-S cluster domain-containing protein;


Pssm-ID: 235941 [Multi-domain]  Cd Length: 280  Bit Score: 42.61  E-value: 3.90e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 489957397   9 CINCDMCEPECPNEAISMGDSIYEINSDRCTECighyetPTCQKVCP 55
Cdd:PRK07118 215 CIGCGKCVKACPAGAITMENNLAVIDQEKCTSC------GKCVEKCP 255
MtMvhB_like cd10549
Uncharacterized polyferredoxin-like protein; This family contains uncharacterized ...
 8-55 2.56e-05

Uncharacterized polyferredoxin-like protein; This family contains uncharacterized polyferredoxin protein similar to Methanobacterium thermoautotrophicum MvhB. The mvhB is a gene of the methylviologen-reducing hydrogenase operon. It is predicted to contain 12 [4Fe-4S] clusters, and was therefore suggested to be a polyferredoxin. As a subfamily of the beta subunit of the DMSO Reductase (DMSOR) family, it is predicted to function as electron carrier in the reducing reaction.


Pssm-ID: 319871 [Multi-domain]  Cd Length: 128  Bit Score: 39.69  E-value: 2.56e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 489957397   8 KCINCDMCEPECPNEAISMGDSI-YEINSDRCTECighyetPTCQKVCP 55
Cdd:cd10549   79 KCIGCGLCVKVCPVDAITLEDELeIVIDKEKCIGC------GICAEVCP 121
NuoI TIGR01971
NADH-quinone oxidoreductase, chain I; This model represents the I subunit (one of 14: A->N) of ...
 8-55 3.72e-04

NADH-quinone oxidoreductase, chain I; This model represents the I subunit (one of 14: A->N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes. [Energy metabolism, Electron transport]


Pssm-ID: 273902 [Multi-domain]  Cd Length: 122  Bit Score: 36.24  E-value: 3.72e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 489957397    8 KCINCDMCEPECPNEAISMGD----------SIYEINSDRCTECighyetPTCQKVCP 55
Cdd:TIGR01971  44 KCIGCTLCAAVCPADAIRVVPaegedgkrrlKFYEINFGRCIFC------GLCEEACP 95
Fer4_7 pfam12838
4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to ...
 9-55 6.67e-04

4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.


Pssm-ID: 463724 [Multi-domain]  Cd Length: 51  Bit Score: 34.42  E-value: 6.67e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 489957397   9 CINCDMCEPECPNEAISMGDS-------IYEINSDRCTECighyetPTCQKVCP 55
Cdd:pfam12838  1 CIGCGACVAACPVGAITLDEVgekkgtkTVVIDPERCVGC------GACVAVCP 48
 
Name Accession Description Interval E-value
di_4Fe-4S_YfhL NF033683
YfhL family 4Fe-4S dicluster ferredoxin;
1-80 6.22e-48

YfhL family 4Fe-4S dicluster ferredoxin;


Pssm-ID: 468141 [Multi-domain]  Cd Length: 79  Bit Score: 146.47  E-value: 6.22e-48
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489957397  1 MALLITKKCINCDMCEPECPNEAISMGDSIYEINSDRCTECIGHYETPTCQKVCPIpNTILKDPAHVENEEQLWDKFVLM 80
Cdd:NF033683  1 MALLITDECINCDVCEPECPNEAISMGDEIYEIDPDRCTECVGHYDEPQCVQVCPV-DCIIPDPDHVETQEQLMEKYERL 79
COG2768 COG2768
Uncharacterized Fe-S cluster protein [Function unknown];
1-55 3.66e-11

Uncharacterized Fe-S cluster protein [Function unknown];


Pssm-ID: 442050 [Multi-domain]  Cd Length: 74  Bit Score: 53.58  E-value: 3.66e-11
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*
gi 489957397  1 MALLITKKCINCDMCEPECPNEAISMGDSIYEINSDRCTECighyetPTCQKVCP 55
Cdd:COG2768   5 KPYVDEEKCIGCGACVKVCPVGAISIEDGKAVIDPEKCIGC------GACIEVCP 53
NuoI COG1143
Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy ...
 6-55 9.94e-08

Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]; Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440758 [Multi-domain]  Cd Length: 66  Bit Score: 44.35  E-value: 9.94e-08
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....
gi 489957397  6 TKKCINCDMCEPECPNEAISMGD----SIYEINSDRCTECIghyetpTCQKVCP 55
Cdd:COG1143   1 EDKCIGCGLCVRVCPVDAITIEDgepgKVYVIDPDKCIGCG------LCVEVCP 48
PRK07118 PRK07118
Fe-S cluster domain-containing protein;
9-55 3.90e-06

Fe-S cluster domain-containing protein;


Pssm-ID: 235941 [Multi-domain]  Cd Length: 280  Bit Score: 42.61  E-value: 3.90e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 489957397   9 CINCDMCEPECPNEAISMGDSIYEINSDRCTECighyetPTCQKVCP 55
Cdd:PRK07118 215 CIGCGKCVKACPAGAITMENNLAVIDQEKCTSC------GKCVEKCP 255
IorA COG4231
TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit [Energy production and ...
 5-55 3.93e-06

TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit [Energy production and conversion];


Pssm-ID: 443375 [Multi-domain]  Cd Length: 76  Bit Score: 40.41  E-value: 3.93e-06
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|.
gi 489957397  5 ITKKCINCDMCEPECPNEAISMGDSIYEINSDRCTECiGhyetpTCQKVCP 55
Cdd:COG4231  20 DEDKCTGCGACVKVCPADAIEEGDGKAVIDPDLCIGC-G-----SCVQVCP 64
Nar1 COG4624
Iron only hydrogenase large subunit, C-terminal domain [Energy production and conversion];
8-55 4.89e-06

Iron only hydrogenase large subunit, C-terminal domain [Energy production and conversion];


Pssm-ID: 443663 [Multi-domain]  Cd Length: 450  Bit Score: 42.71  E-value: 4.89e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 489957397   8 KCINCDMCEPECPNEAISMGDSIYEINSDRCTECiGHyetptCQKVCP 55
Cdd:COG4624   92 KCKNCYPCVRACPVKAIKVDDGKAEIDEEKCISC-GQ-----CVAVCP 133
DsrA COG2221
Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Inorganic ion ...
 8-55 5.42e-06

Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Inorganic ion transport and metabolism];


Pssm-ID: 441823 [Multi-domain]  Cd Length: 69  Bit Score: 40.03  E-value: 5.42e-06
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*...
gi 489957397  8 KCINCDMCEPECPNEAISMGDSIYEINSDRCTECiGHyetptCQKVCP 55
Cdd:COG2221  16 KCIGCGLCVAVCPTGAISLDDGKLVIDEEKCIGC-GA-----CIRVCP 57
MtMvhB_like cd10549
Uncharacterized polyferredoxin-like protein; This family contains uncharacterized ...
 8-55 2.56e-05

Uncharacterized polyferredoxin-like protein; This family contains uncharacterized polyferredoxin protein similar to Methanobacterium thermoautotrophicum MvhB. The mvhB is a gene of the methylviologen-reducing hydrogenase operon. It is predicted to contain 12 [4Fe-4S] clusters, and was therefore suggested to be a polyferredoxin. As a subfamily of the beta subunit of the DMSO Reductase (DMSOR) family, it is predicted to function as electron carrier in the reducing reaction.


Pssm-ID: 319871 [Multi-domain]  Cd Length: 128  Bit Score: 39.69  E-value: 2.56e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 489957397   8 KCINCDMCEPECPNEAISMGDSI-YEINSDRCTECighyetPTCQKVCP 55
Cdd:cd10549   79 KCIGCGLCVKVCPVDAITLEDELeIVIDKEKCIGC------GICAEVCP 121
HycB COG1142
Fe-S-cluster-containing hydrogenase component 2 [Energy production and conversion];
4-55 2.94e-05

Fe-S-cluster-containing hydrogenase component 2 [Energy production and conversion];


Pssm-ID: 440757 [Multi-domain]  Cd Length: 138  Bit Score: 39.64  E-value: 2.94e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 489957397   4 LITKKCINCDMCEPECPNEAISMGDSIYEINSDRCTECIGHYETPTCQKVCP 55
Cdd:COG1142   78 VDEEKCIGCGLCVLACPFGAITMVGEKSRAVAVKCDLCGGREGGPACVEACP 129
NapF COG1145
Ferredoxin [Energy production and conversion];
6-55 4.65e-05

Ferredoxin [Energy production and conversion];


Pssm-ID: 440760 [Multi-domain]  Cd Length: 238  Bit Score: 39.71  E-value: 4.65e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 489957397   6 TKKCINCDMCEPECPNEAISMGDS--IYEINSDRCTECighyetPTCQKVCP 55
Cdd:COG1145  181 AEKCIGCGLCVKVCPTGAIRLKDGkpQIVVDPDKCIGC------GACVKVCP 226
PRK13795 PRK13795
hypothetical protein; Provisional
 8-56 5.63e-05

hypothetical protein; Provisional


Pssm-ID: 237510 [Multi-domain]  Cd Length: 636  Bit Score: 39.59  E-value: 5.63e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 489957397   8 KCINCDMCEPECPNEAISMGDS--IYEINSDRCTECIghyetpTCQKVCPI 56
Cdd:PRK13795 582 ECVGCGVCVGACPTGAIRIEEGkrKISVDEEKCIHCG------KCTEVCPV 626
PorD COG1144
Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta ...
 4-55 7.43e-05

Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta subunit [Energy production and conversion]; Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, delta subunit is part of the Pathway/BioSystem: Pyruvate oxidation


Pssm-ID: 440759 [Multi-domain]  Cd Length: 84  Bit Score: 37.34  E-value: 7.43e-05
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|...
gi 489957397  4 LITKKCINCDMCEPECPNEAISMGDS-IYEINSDRCTECighyetPTCQKVCP 55
Cdd:COG1144  27 VDEDKCIGCGLCWIVCPDGAIRVDDGkYYGIDYDYCKGC------GICAEVCP 73
HdrA COG1148
Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];
8-55 1.32e-04

Heterodisulfide reductase, subunit A (polyferredoxin) [Energy production and conversion];


Pssm-ID: 440762 [Multi-domain]  Cd Length: 563  Bit Score: 38.30  E-value: 1.32e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 489957397   8 KCINCDMCEPECPNEAISMGDS-IYEINSDRCTECiGhyetpTCQKVCP 55
Cdd:COG1148  497 KCTGCGRCVEVCPYGAISIDEKgVAEVNPALCKGC-G-----TCAAACP 539
COG1149 COG1149
MinD superfamily P-loop ATPase, contains an inserted ferredoxin domain [General function ...
 1-55 1.75e-04

MinD superfamily P-loop ATPase, contains an inserted ferredoxin domain [General function prediction only];


Pssm-ID: 440763 [Multi-domain]  Cd Length: 68  Bit Score: 36.24  E-value: 1.75e-04
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 489957397  1 MALLITKKCINCDMCEPECPNEAISMGDS-IYEINSDRCTECIGhyetptCQKVCP 55
Cdd:COG1149   5 IPVIDEEKCIGCGLCVEVCPEGAIKLDDGgAPVVDPDLCTGCGA------CVGVCP 54
NuoI TIGR01971
NADH-quinone oxidoreductase, chain I; This model represents the I subunit (one of 14: A->N) of ...
 8-55 3.72e-04

NADH-quinone oxidoreductase, chain I; This model represents the I subunit (one of 14: A->N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes. [Energy metabolism, Electron transport]


Pssm-ID: 273902 [Multi-domain]  Cd Length: 122  Bit Score: 36.24  E-value: 3.72e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 489957397    8 KCINCDMCEPECPNEAISMGD----------SIYEINSDRCTECighyetPTCQKVCP 55
Cdd:TIGR01971  44 KCIGCTLCAAVCPADAIRVVPaegedgkrrlKFYEINFGRCIFC------GLCEEACP 95
PreA COG1146
NAD-dependent dihydropyrimidine dehydrogenase, PreA subunit [Nucleotide transport and ...
 1-55 3.73e-04

NAD-dependent dihydropyrimidine dehydrogenase, PreA subunit [Nucleotide transport and metabolism];


Pssm-ID: 440761 [Multi-domain]  Cd Length: 67  Bit Score: 35.46  E-value: 3.73e-04
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 489957397  1 MALLITKKCINCDMCEPECPNEAISMGDS---IYEINSDRCTECighyetPTCQKVCP 55
Cdd:COG1146   2 MPVIDTDKCIGCGACVEVCPVDVLELDEEgkkALVINPEECIGC------GACELVCP 53
PRK07118 PRK07118
Fe-S cluster domain-containing protein;
9-55 5.97e-04

Fe-S cluster domain-containing protein;


Pssm-ID: 235941 [Multi-domain]  Cd Length: 280  Bit Score: 36.45  E-value: 5.97e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 489957397   9 CINCDMCEPECPNEAISMGDSIYEINSDRCTECighyetPTCQKVCP 55
Cdd:PRK07118 141 CLGLGSCVAACPFDAIHIENGLPVVDEDKCTGC------GACVKACP 181
Fer4_7 pfam12838
4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to ...
 9-55 6.67e-04

4Fe-4S dicluster domain; Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.


Pssm-ID: 463724 [Multi-domain]  Cd Length: 51  Bit Score: 34.42  E-value: 6.67e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 489957397   9 CINCDMCEPECPNEAISMGDS-------IYEINSDRCTECighyetPTCQKVCP 55
Cdd:pfam12838  1 CIGCGACVAACPVGAITLDEVgekkgtkTVVIDPERCVGC------GACVAVCP 48
PRK00783 PRK00783
DNA-directed RNA polymerase subunit D; Provisional
 5-79 8.27e-04

DNA-directed RNA polymerase subunit D; Provisional


Pssm-ID: 234837 [Multi-domain]  Cd Length: 263  Bit Score: 36.02  E-value: 8.27e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489957397   5 ITKKCINCDMCEPECPNEAISMGDSIYEINSD-RCTECighyetPTCQKVCPIPNTilkdpaHVENEEqlwDKFVL 79
Cdd:PRK00783 167 VSEDCDECEKCVEACPRGVLELKEGKLVVTDLlNCSLC------KLCERACPGKAI------RVSDDE---NKFIF 227
PRK12769 PRK12769
putative oxidoreductase Fe-S binding subunit; Reviewed
 4-55 8.94e-04

putative oxidoreductase Fe-S binding subunit; Reviewed


Pssm-ID: 183733 [Multi-domain]  Cd Length: 654  Bit Score: 36.26  E-value: 8.94e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 489957397   4 LITKKCINCDMCEPECPNEAISM-----GDSIYEINSDRCTECIGHYETPTCQKVCP 55
Cdd:PRK12769  82 VNQQKCIGCKSCVVACPFGTMQIvltpvAAGKVKATAHKCDLCAGRENGPACVENCP 138
porD PRK09625
pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
 9-73 9.01e-04

pyruvate flavodoxin oxidoreductase subunit delta; Reviewed


Pssm-ID: 236596 [Multi-domain]  Cd Length: 133  Bit Score: 35.49  E-value: 9.01e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489957397   9 CINCDMCEPECPNEAI-SMGDSIYEINSDRCTECighyetPTCQKVCPI-PNTILKDPAHVENEEQL 73
Cdd:PRK09625  61 CINCFNCWVYCPDAAIlSRDKKLKGVDYSHCKGC------GVCVEVCPTnPKSLLMFEEQIENETAL 121
PRK05888 PRK05888
NADH-quinone oxidoreductase subunit NuoI;
8-55 3.45e-03

NADH-quinone oxidoreductase subunit NuoI;


Pssm-ID: 235637 [Multi-domain]  Cd Length: 164  Bit Score: 34.09  E-value: 3.45e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 489957397   8 KCINCDMCEPECPNEAISMgDSI-----------YEINSDRCTECigHYetptCQKVCP 55
Cdd:PRK05888  59 RCIACKLCAAICPADAITI-EAAeredgrrrttrYDINFGRCIFC--GF----CEEACP 110
PRK12809 PRK12809
putative oxidoreductase Fe-S binding subunit; Reviewed
 4-68 4.68e-03

putative oxidoreductase Fe-S binding subunit; Reviewed


Pssm-ID: 183762 [Multi-domain]  Cd Length: 639  Bit Score: 34.23  E-value: 4.68e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489957397   4 LITKKCINCDMCEPECPNEAISMGDSIyeinSDRCTECIGHYE-TPTCQKVCPIPNTILKDPAHVE 68
Cdd:PRK12809  82 LDEQKCIGCKRCAIACPFGVVEMVDTI----AQKCDLCNQRSSgTQACIEVCPTQALRLMDDKGLQ 143
NapH COG0348
Polyferredoxin NapH [Energy production and conversion];
8-55 6.51e-03

Polyferredoxin NapH [Energy production and conversion];


Pssm-ID: 440117 [Multi-domain]  Cd Length: 263  Bit Score: 33.50  E-value: 6.51e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 489957397   8 KCINCDMCEPECPneaisMGDSIY--EINSDRCTECiGHyetptCQKVCP 55
Cdd:COG0348  211 DCIDCGLCVKVCP-----MGIDIRkgEINQSECINC-GR-----CIDACP 249
PRK05888 PRK05888
NADH-quinone oxidoreductase subunit NuoI;
8-32 7.05e-03

NADH-quinone oxidoreductase subunit NuoI;


Pssm-ID: 235637 [Multi-domain]  Cd Length: 164  Bit Score: 33.32  E-value: 7.05e-03
                         10        20
                 ....*....|....*....|....*
gi 489957397   8 KCINCDMCEPECPNEAISMGDsIYE 32
Cdd:PRK05888  98 RCIFCGFCEEACPTDAIVETP-DFE 121
PRK12771 PRK12771
putative glutamate synthase (NADPH) small subunit; Provisional
 9-55 8.27e-03

putative glutamate synthase (NADPH) small subunit; Provisional


Pssm-ID: 237198 [Multi-domain]  Cd Length: 564  Bit Score: 33.31  E-value: 8.27e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 489957397   9 CINCDMCEPECPNEAISMGDSI--YEINSDRCTECigHyetpTCQKVCP 55
Cdd:PRK12771 512 CFECDNCYGACPQDAIIKLGPGrrYHFDYDKCTGC--H----ICADVCP 554
MtMvhB_like cd10549
Uncharacterized polyferredoxin-like protein; This family contains uncharacterized ...
 7-55 9.68e-03

Uncharacterized polyferredoxin-like protein; This family contains uncharacterized polyferredoxin protein similar to Methanobacterium thermoautotrophicum MvhB. The mvhB is a gene of the methylviologen-reducing hydrogenase operon. It is predicted to contain 12 [4Fe-4S] clusters, and was therefore suggested to be a polyferredoxin. As a subfamily of the beta subunit of the DMSO Reductase (DMSOR) family, it is predicted to function as electron carrier in the reducing reaction.


Pssm-ID: 319871 [Multi-domain]  Cd Length: 128  Bit Score: 32.75  E-value: 9.68e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 489957397   7 KKCINCDMCEPECPNEAISMGDSI-----YEINSDRCTECighyetPTCQKVCP 55
Cdd:cd10549    6 EKCIGCGICVKACPTDAIELGPNGaiargPEIDEDKCVFC------GACVEVCP 53
DMSOR_beta_like cd16367
uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the ...
 2-64 9.79e-03

uncharacterized subfamily of DMSO Reductase beta subunit family; This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.


Pssm-ID: 319889 [Multi-domain]  Cd Length: 138  Bit Score: 32.66  E-value: 9.79e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489957397   2 ALLITKKCINCDMCEPECPNEAISMgdsiyeINSDRCTECIGHYEtPTCQKVCPIPNTILKDP 64
Cdd:cd16367   81 EVVISDACCGCGNCASACPYGAIQM------VRAVKCDLCAGYAG-PACVSACPTGAAIRVNP 136
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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