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Concise Results
Standard Results
Full Results
MULTISPECIES: exodeoxyribonuclease V subunit gamma [Enterobacter]
Protein Classification
exodeoxyribonuclease V subunit gamma ( domain architecture ID 11485181 )
exodeoxyribonuclease V subunit gamma (RecC) is a component of the heterotrimeric RecBCD helicase/nuclease complex that is essential for double-strand DNA break repair and recombination
List of domain hits
Name
Accession
Description
Interval
E-value
recC
PRK11069 exodeoxyribonuclease V subunit gamma;
1-1124
0e+00
exodeoxyribonuclease V subunit gamma;
Pssm-ID: 236835 [Multi-domain]
Cd Length: 1122
Bit Score: 2213.60
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 1 M LR VYHSN R LDVL E ALM EYIV E Q E R LDDPFEPEM V LVQS T GMAQWLQM S L S QKFGIAANIDFPLPA S FIW E MF V RVLPDI 80
Cdd:PRK11069 1 M FT VYHSN Q LDVL K ALM VFLI E R E P LDDPFEPEM I LVQS P GMAQWLQM E L A QKFGIAANIDFPLPA T FIW D MF T RVLPDI 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 81 P EQ SAFNK QS M A WKLMTLLP DM L A R D EF AM LRHYL N DD T DKRKLFQLA S R T ADL Y DQYLVYR AD WL IR WEAG E LV D GL PE 160
Cdd:PRK11069 81 P KE SAFNK EA M T WKLMTLLP QL L E R P EF TP LRHYL T DD E DKRKLFQLA A R I ADL F DQYLVYR PE WL AS WEAG Q LV E GL GD 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 161 AQ I WQAPLWKALVE H T GK LGQP K WHRANLY D RFI SI LE NSAER P AR LP S RVFICGISALPPVYL N AL K ALGKH T DIH I LF 240
Cdd:PRK11069 161 AQ P WQAPLWKALVE Y T HQ LGQP R WHRANLY Q RFI ET LE SATTC P PG LP K RVFICGISALPPVYL Q AL Q ALGKH I DIH L LF 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 241 TNPCR H YWGDIQDP RW L SR L VT RQR KRL FE E R AV PLF K DSENA A QLF DEE G I Q NLP NPLLASWGKLGRD YI YLLS DIT SS 320
Cdd:PRK11069 241 TNPCR Y YWGDIQDP AF L AK L LA RQR RHS FE D R EL PLF R DSENA E QLF NSD G E Q DVG NPLLASWGKLGRD NL YLLS QLE SS 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 321 G E gd V DAF A DI T PD S LLHNIQ L DIL D LE NR AV A G ITA EEF A RSD K KR K LDPDDRS IAI HVCHSPQREVE I LHDRLLAML Q 400
Cdd:PRK11069 321 Q E -- L DAF V DI E PD N LLHNIQ A DIL E LE DH AV I G VND EEF S RSD H KR P LDPDDRS LSF HVCHSPQREVE V LHDRLLAML E 398
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 401 D DPTLTPRDI V VMVADIDSYSPFIQAVFG S A TGD RYLP Y AISDRRARQ S HP A LQAFISLLSLPDSRF IS EDVLALL D VP V 480
Cdd:PRK11069 399 A DPTLTPRDI I VMVADIDSYSPFIQAVFG N A PAE RYLP F AISDRRARQ A HP V LQAFISLLSLPDSRF TA EDVLALL E VP A 478
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 481 LAARF N I N EEGLRYLRQWV N ESG V RWG I DDDNV Q E F ELPATGQHTW Q FGLTRMLLGYAMES IH GEW ND VLPYDESSGLIA 560
Cdd:PRK11069 479 LAARF A I T EEGLRYLRQWV E ESG I RWG L DDDNV R E L ELPATGQHTW R FGLTRMLLGYAMES AA GEW QG VLPYDESSGLIA 558
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 561 EL V GHLASLLMQLN R WRR A L M QPRPLEEWLPVCR EM L N DFFLPD S ETEAA M ALIE K QWQAI VD EG VNSH Y HE AVPLSLLR 640
Cdd:PRK11069 559 EL A GHLASLLMQLN I WRR G L A QPRPLEEWLPVCR QL L D DFFLPD A ETEAA L ALIE Q QWQAI IE EG LDAQ Y GD AVPLSLLR 638
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 641 DEL T QRLDQERISQRFLAGPVN I CTLMPMRSIPFKVVCLLGMNDG I YPR A LPPLGFDLMS AQ PKRGDRSRRDDDRYLFLE 720
Cdd:PRK11069 639 DEL A QRLDQERISQRFLAGPVN F CTLMPMRSIPFKVVCLLGMNDG V YPR T LPPLGFDLMS QK PKRGDRSRRDDDRYLFLE 718
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 721 AL M SAQ SR LYISYIGRSIQDNSERFPSVLV Q EL VD YIGQS HY LPGDEA C NCDES ER RV I AH I TC H H S RMPFDP V N YV P D E 800
Cdd:PRK11069 719 AL L SAQ QQ LYISYIGRSIQDNSERFPSVLV S EL LE YIGQS YC LPGDEA L NCDES AA RV K AH L TC L H T RMPFDP Q N FQ P G E 798
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 801 L QSYAREWLPAA KKA G TPQT DF I Q A L EPRAIDT LT FEQ LQRFW A HPVRAFFQ Q RL Q VNFR S EESE I PD A EPF I LDGL E R F 880
Cdd:PRK11069 799 Q QSYAREWLPAA SQQ G KAHP DF V Q P L PFEPPEE LT LDE LQRFW R HPVRAFFQ R RL K VNFR T EESE L PD E EPF T LDGL S R Y 878
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 881 K LN S QLLNAL VDEE DA SK LFRR Y RA S G L LPYGAFGEI V W DA QC E EM RA LADRV I ACRQP AS S I EIDL DC NG MH L S GWL TH 960
Cdd:PRK11069 879 Q LN Q QLLNAL IEQD DA ER LFRR Q RA A G K LPYGAFGEI F W ET QC Q EM QQ LADRV R ACRQP GQ S L EIDL TL NG VQ L T GWL PQ 958
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 961 VQ S DGLLRWRP SM LSV SH GLQLWLEHLVY S ASG HE GESRLF V RK D GEWRFP RMEP EQA LT YLS LY IEGYR Q GM NK PLLLL 1040
Cdd:PRK11069 959 VQ P DGLLRWRP GL LSV AD GLQLWLEHLVY C ASG GN GESRLF G RK E GEWRFP PLAA EQA KQ YLS QL IEGYR E GM SA PLLLL 1038
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 1041 P E SGGAW I KACYD AQ NDA M L T DE ASL QKAR S K F LQA Y EGNMMVRGEGDD VWY QRLWR T L EP E YFDI I TQE AQRYLLPL YK 1120
Cdd:PRK11069 1039 P K SGGAW L KACYD RE NDA I L D DE ETQ QKAR K K L LQA W EGNMMVRGEGDD IYI QRLWR Q L DD E TLEA I IEQ AQRYLLPL FR 1118
....
gi 489959467 1121 FNQS 1124
Cdd:PRK11069 1119 FNQS 1122
Name
Accession
Description
Interval
E-value
recC
PRK11069 exodeoxyribonuclease V subunit gamma;
1-1124
0e+00
exodeoxyribonuclease V subunit gamma;
Pssm-ID: 236835 [Multi-domain]
Cd Length: 1122
Bit Score: 2213.60
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 1 M LR VYHSN R LDVL E ALM EYIV E Q E R LDDPFEPEM V LVQS T GMAQWLQM S L S QKFGIAANIDFPLPA S FIW E MF V RVLPDI 80
Cdd:PRK11069 1 M FT VYHSN Q LDVL K ALM VFLI E R E P LDDPFEPEM I LVQS P GMAQWLQM E L A QKFGIAANIDFPLPA T FIW D MF T RVLPDI 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 81 P EQ SAFNK QS M A WKLMTLLP DM L A R D EF AM LRHYL N DD T DKRKLFQLA S R T ADL Y DQYLVYR AD WL IR WEAG E LV D GL PE 160
Cdd:PRK11069 81 P KE SAFNK EA M T WKLMTLLP QL L E R P EF TP LRHYL T DD E DKRKLFQLA A R I ADL F DQYLVYR PE WL AS WEAG Q LV E GL GD 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 161 AQ I WQAPLWKALVE H T GK LGQP K WHRANLY D RFI SI LE NSAER P AR LP S RVFICGISALPPVYL N AL K ALGKH T DIH I LF 240
Cdd:PRK11069 161 AQ P WQAPLWKALVE Y T HQ LGQP R WHRANLY Q RFI ET LE SATTC P PG LP K RVFICGISALPPVYL Q AL Q ALGKH I DIH L LF 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 241 TNPCR H YWGDIQDP RW L SR L VT RQR KRL FE E R AV PLF K DSENA A QLF DEE G I Q NLP NPLLASWGKLGRD YI YLLS DIT SS 320
Cdd:PRK11069 241 TNPCR Y YWGDIQDP AF L AK L LA RQR RHS FE D R EL PLF R DSENA E QLF NSD G E Q DVG NPLLASWGKLGRD NL YLLS QLE SS 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 321 G E gd V DAF A DI T PD S LLHNIQ L DIL D LE NR AV A G ITA EEF A RSD K KR K LDPDDRS IAI HVCHSPQREVE I LHDRLLAML Q 400
Cdd:PRK11069 321 Q E -- L DAF V DI E PD N LLHNIQ A DIL E LE DH AV I G VND EEF S RSD H KR P LDPDDRS LSF HVCHSPQREVE V LHDRLLAML E 398
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 401 D DPTLTPRDI V VMVADIDSYSPFIQAVFG S A TGD RYLP Y AISDRRARQ S HP A LQAFISLLSLPDSRF IS EDVLALL D VP V 480
Cdd:PRK11069 399 A DPTLTPRDI I VMVADIDSYSPFIQAVFG N A PAE RYLP F AISDRRARQ A HP V LQAFISLLSLPDSRF TA EDVLALL E VP A 478
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 481 LAARF N I N EEGLRYLRQWV N ESG V RWG I DDDNV Q E F ELPATGQHTW Q FGLTRMLLGYAMES IH GEW ND VLPYDESSGLIA 560
Cdd:PRK11069 479 LAARF A I T EEGLRYLRQWV E ESG I RWG L DDDNV R E L ELPATGQHTW R FGLTRMLLGYAMES AA GEW QG VLPYDESSGLIA 558
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 561 EL V GHLASLLMQLN R WRR A L M QPRPLEEWLPVCR EM L N DFFLPD S ETEAA M ALIE K QWQAI VD EG VNSH Y HE AVPLSLLR 640
Cdd:PRK11069 559 EL A GHLASLLMQLN I WRR G L A QPRPLEEWLPVCR QL L D DFFLPD A ETEAA L ALIE Q QWQAI IE EG LDAQ Y GD AVPLSLLR 638
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 641 DEL T QRLDQERISQRFLAGPVN I CTLMPMRSIPFKVVCLLGMNDG I YPR A LPPLGFDLMS AQ PKRGDRSRRDDDRYLFLE 720
Cdd:PRK11069 639 DEL A QRLDQERISQRFLAGPVN F CTLMPMRSIPFKVVCLLGMNDG V YPR T LPPLGFDLMS QK PKRGDRSRRDDDRYLFLE 718
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 721 AL M SAQ SR LYISYIGRSIQDNSERFPSVLV Q EL VD YIGQS HY LPGDEA C NCDES ER RV I AH I TC H H S RMPFDP V N YV P D E 800
Cdd:PRK11069 719 AL L SAQ QQ LYISYIGRSIQDNSERFPSVLV S EL LE YIGQS YC LPGDEA L NCDES AA RV K AH L TC L H T RMPFDP Q N FQ P G E 798
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 801 L QSYAREWLPAA KKA G TPQT DF I Q A L EPRAIDT LT FEQ LQRFW A HPVRAFFQ Q RL Q VNFR S EESE I PD A EPF I LDGL E R F 880
Cdd:PRK11069 799 Q QSYAREWLPAA SQQ G KAHP DF V Q P L PFEPPEE LT LDE LQRFW R HPVRAFFQ R RL K VNFR T EESE L PD E EPF T LDGL S R Y 878
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 881 K LN S QLLNAL VDEE DA SK LFRR Y RA S G L LPYGAFGEI V W DA QC E EM RA LADRV I ACRQP AS S I EIDL DC NG MH L S GWL TH 960
Cdd:PRK11069 879 Q LN Q QLLNAL IEQD DA ER LFRR Q RA A G K LPYGAFGEI F W ET QC Q EM QQ LADRV R ACRQP GQ S L EIDL TL NG VQ L T GWL PQ 958
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 961 VQ S DGLLRWRP SM LSV SH GLQLWLEHLVY S ASG HE GESRLF V RK D GEWRFP RMEP EQA LT YLS LY IEGYR Q GM NK PLLLL 1040
Cdd:PRK11069 959 VQ P DGLLRWRP GL LSV AD GLQLWLEHLVY C ASG GN GESRLF G RK E GEWRFP PLAA EQA KQ YLS QL IEGYR E GM SA PLLLL 1038
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 1041 P E SGGAW I KACYD AQ NDA M L T DE ASL QKAR S K F LQA Y EGNMMVRGEGDD VWY QRLWR T L EP E YFDI I TQE AQRYLLPL YK 1120
Cdd:PRK11069 1039 P K SGGAW L KACYD RE NDA I L D DE ETQ QKAR K K L LQA W EGNMMVRGEGDD IYI QRLWR Q L DD E TLEA I IEQ AQRYLLPL FR 1118
....
gi 489959467 1121 FNQS 1124
Cdd:PRK11069 1119 FNQS 1122
RecC
COG1330 Scaffold subunit RecC of the DNA repair enzyme RecBCD (exonuclease V) [Replication, ...
1-1124
0e+00
Scaffold subunit RecC of the DNA repair enzyme RecBCD (exonuclease V) [Replication, recombination and repair];
Pssm-ID: 440941 [Multi-domain]
Cd Length: 1087
Bit Score: 1565.98
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 1 ML RV YHSNRL D VL EA L MEYIVEQER L D DPF E PE MV LVQS T GMA Q WLQ MS L SQK FGIAANI D FPLPASFIW EM F VR VLPD I 80
Cdd:COG1330 1 ML HL YHSNRL E VL AD L LAALLAAQP L A DPF A PE VI LVQS P GMA R WLQ LE L AER FGIAANI E FPLPASFIW QL F RA VLPD V 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 81 PE Q S A F N K QSMA W K LM T LLP DM L ARD EFA M L RH YL N DD T D K RK LF QLA S R T ADL Y DQYLVYR A DWL IR WEAGE L VD - G LP 159
Cdd:COG1330 81 PE E S P F S K EALT W R LM R LLP EL L DEP EFA P L AR YL G DD E D Q RK RY QLA G R L ADL F DQYLVYR P DWL AA WEAGE D VD g P LP 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 160 EA Q I WQA P LW K ALV EH TG K L g Q PK WHRANLY D RFI SI L ENSAE RPA R LP S RVF IC GISALPPVYL NA L K AL GK H T D I H IL 239
Cdd:COG1330 161 DD Q A WQA A LW R ALV AE TG A L - Q SA WHRANLY Q RFI AA L RSGEP RPA G LP E RVF VF GISALPPVYL EV L Q AL AR H I D V H LF 239
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 240 FT NPCR H YWGDI Q D P R W L S RL VT R Q rkrlfeeravplfkdsenaaqlf D EEGIQNLP NPLLASWGK L GRD YIY LL SDITS 319
Cdd:COG1330 240 LL NPCR E YWGDI V D A R E L A RL AA R S ----------------------- D DDDLLEVG NPLLASWGK Q GRD FLD LL AELED 296
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 320 S g EGDV DAF A D IT PD S LLH NI Q L DIL D L ENR A VAG itaeefarsd K KR K L D PDDRS IAI H V CHSP Q REVE I LHD R LLA ML 399
Cdd:COG1330 297 E - SQEI DAF V D PP PD T LLH QL Q A DIL E L RPP A EGA ---------- S KR P L A PDDRS LQV H A CHSP L REVE V LHD Q LLA LF 365
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 400 Q DDPTLTPRDI V VMV A DI DS Y S P F IQAVFG S A TG D - R YL P YA I S DR R ARQ SH P A L Q AF IS LL S LP D SRF ISED VL A LL D V 478
Cdd:COG1330 366 A DDPTLTPRDI L VMV P DI EA Y A P Y IQAVFG Q A PP D p R RI P FS I A DR S ARQ EN P L L A AF LQ LL D LP Q SRF TASE VL D LL E V 445
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 479 P VL A A RF NIN E EG L RY LR Q WV N E S G V RWG I D DDNVQEFE LPAT G Q H TW Q FGL T R M LLGYAM ESIH G E W NDV LPYDE SS GL 558
Cdd:COG1330 446 P AV A R RF GLD E DD L ER LR R WV A E A G I RWG L D AAHRARLG LPAT E Q N TW R FGL D R L LLGYAM GEEA G L W QGI LPYDE VE GL 525
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 559 I AEL V G H LA SL L MQ L NR WR RA L MQ PR P L E EWL PVC R EM L N DFF L PD S E T E A A M A LIEKQWQAIVDEGVNSH Y H E AV PL SL 638
Cdd:COG1330 526 D AEL L G R LA EF L DR L AA WR QR L AE PR T L A EWL ERL R AL L D DFF A PD E E D E W A L A QLRRALAELAEQAAEAG Y D E PL PL AV 605
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 639 L RD E L TQ RLD QERIS QRFLAG P V NI CTLMPMRSIPF K VVCLLGMNDG IY PR AL PPLGFDLM SAQ P K RGDRSRRDDDRYLF 718
Cdd:COG1330 606 V RD A L AA RLD GRPTR QRFLAG G V TF CTLMPMRSIPF R VVCLLGMNDG DF PR QQ PPLGFDLM ARH P R RGDRSRRDDDRYLF 685
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 719 LEAL M SA QS RLYISY I GRSI Q DNSER F PSVLV Q EL V DY IG Q SHY LPGD eacncde S ER R VI AH ITCH H SRM PF D P VNYV P 798
Cdd:COG1330 686 LEAL L SA RE RLYISY V GRSI R DNSER P PSVLV S EL L DY LA Q GFA LPGD ------- S GE R LR AH LVVR H PLQ PF S P RYFE P 758
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 799 D -- E L Q SY AR EWL P AA KKA G T P QTD ---- FI Q A L E P RA - IDTL T FEQ L Q RF WA HPVRAF FQ QRL Q V NFRS EE S E IP DAEP 871
Cdd:COG1330 759 G sp R L F SY DA EWL A AA RAL G Q P RAP appf LA Q P L P P PE p EEEV T LDD L L RF LR HPVRAF LR QRL G V RLPE EE E E LE DAEP 838
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 872 F I LDGLER FK L NSQ LL N AL VDEE D ASK LF R R Y RA S GLLP Y GAFGE IVWDAQC EE MR ALA DRVIACRQ -- P AS S IEI DLD C 949
Cdd:COG1330 839 F E LDGLER YQ L RQR LL E AL LAGD D PAE LF A R L RA R GLLP P GAFGE LLLERLL EE VA ALA AALRPLLA gp P LE S LDV DLD L 918
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 950 N G MH L S GWL TH V QS DGL L RWRP SM L SVSHG L Q LWLEHL VYS A S G HE G ESRLF V RK DG E WR FPRME PE Q A LTY L SLYIEG Y 1029
Cdd:COG1330 919 G G VR L T GWL DG V RG DGL V RWRP GK L KAKDL L R LWLEHL ALC A A G PP G GESVL V GR DG V WR LAPLP PE E A RAL L AELLAL Y 998
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 1030 RQG MNK PL L L L P ESGG AW IK ACY daqndamlt D EASLQ KA RSKFL QA Y EG NMM V R GEGDD VWY QR LW R T L E P - E YFDIIT 1108
Cdd:COG1330 999 RQG LRQ PL P L F P KTAW AW AE ACY --------- D GKTQE KA LEAAR QA W EG GDF V P GEGDD PYL QR VF R G L D P l E LDERFA 1069
1130
....*....|....*.
gi 489959467 1109 QE A Q R Y LLPL YKFNQS 1124
Cdd:COG1330 1070 AL A E R L LLPL LAHLEA 1085
recC
TIGR01450 exodeoxyribonuclease V, gamma subunit; This model describes the gamma subunit of ...
2-1089
0e+00
exodeoxyribonuclease V, gamma subunit; This model describes the gamma subunit of exodeoxyribonuclease V. Species containing this protein should also have the alpha (TIGR01447) and beta (TIGR00609) subunits. Candidates from Borrelia and from the Chlamydias differ dramatically and score between trusted and noise cutoffs. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273633 [Multi-domain]
Cd Length: 1060
Bit Score: 1358.26
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 2 L R V YHSNRLDVL E AL MEYIVEQER LDDPFEPE MV LVQS T GMAQWLQM S L SQKF G I AAN ID FPLPASFIW E MFV R VLP D IP 81
Cdd:TIGR01450 1 F R L YHSNRLDVL A AL LAALLRDPP LDDPFEPE LI LVQS P GMAQWLQM T L AEDL G V AAN LE FPLPASFIW Q MFV A VLP E IP 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 82 E Q SAFNK QS M A W K LM T LLP DM L A R D EF AM LRHYL N DD T D K RK LF QLA S R T ADL Y DQYLVYR A DWL IR WEAG EL V D G LPEA 161
Cdd:TIGR01450 81 E E SAFNK EV M S W R LM A LLP AL L E R P EF RT LRHYL A DD S D L RK RY QLA E R L ADL F DQYLVYR P DWL AA WEAG DD V E G PGDL 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 162 Q I WQA P LW K ALV EHT G KL GQP K w HRANL YD RFI SI L ENSAER P AR LP S R V FI C GISALPP V YL N AL K AL GK H T D I H ILF T 241
Cdd:TIGR01450 161 Q A WQA I LW R ALV AGV G AD GQP T - HRANL HQ RFI ER L RSGTTH P PG LP A R L FI F GISALPP T YL Q AL A AL AQ H C D V H LFL T 239
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 242 NPCR H YWGDI Q D PRW L S RL V TR Q R krl FEERAV PL FK D S E NA A Q lfdeegiqnl PN PLLASWGKLGRD Y IYLL SDITS S G 321
Cdd:TIGR01450 240 NPCR E YWGDI I D FKY L A RL L TR H R --- GADPLL PL RQ D L E EH A A ---------- GH PLLASWGKLGRD F IYLL PELEQ S Q 306
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 322 E gd V DAF ADI TPD S LLH NI Q L DIL D LE N R A V agitaeefars D K K RKLD P D DRSI AI H V CHSP Q REVE I LHDRLLA M L QD 401
Cdd:TIGR01450 307 E -- I DAF LEA TPD T LLH QL Q A DIL H LE P R P V ----------- D A K LPSA P L DRSI QF H A CHSP L REVE V LHDRLLA L L EE 373
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 402 DPTL T PRDI V VMV A DIDSY S P F I Q AVFG S A TG D - R Y LPY AI SDRR A RQ SH P A L Q AFI S LL S LP D SRF ISEDV LALLD V P V 480
Cdd:TIGR01450 374 DPTL Q PRDI I VMV P DIDSY A P Y I E AVFG Q A PV D a R F LPY SL SDRR L RQ RE P L L E AFI H LL D LP E SRF TASEI LALLD I P P 453
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 481 LA ARF N I N E EG L RY LR Q WV N E S G V RWG I D DDNVQ E FE LPAT G QH - TW Q FGL T RMLLGYAM ESIH G E W ND VLPYD ESS GL I 559
Cdd:TIGR01450 454 VR ARF G I D E DD L ET LR R WV A E A G I RWG L D AEHRR E LG LPAT D QH n TW R FGL E RMLLGYAM GEDA G I W QG VLPYD DVG GL Q 533
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 560 AEL V G H LA SL L MQ L NR WRR A L M QPRPLE E WL PVC R EM L NDF F LP D SE TE A A MALI E KQ W QAIVD E GVNSHYHEAV PL SLL 639
Cdd:TIGR01450 534 AEL A G R LA EF L ER L SH WRR G L A QPRPLE Q WL ERL R DL L DAL F AV D DT TE L A LTQL E RE W VDWQA E AAGAQFAQPL PL EVV 613
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 640 RD E L TQR LD Q E RI S Q RFLAG P VN I CTL M PMRSIPF K VVCLLGMNDG I YPR ALP P L GFDLM SAQ P KR GDRSRRDDDRYLFL 719
Cdd:TIGR01450 614 RD H L AAL LD D E PT S A RFLAG G VN F CTL V PMRSIPF R VVCLLGMNDG D YPR QQH P A GFDLM ARE P RK GDRSRRDDDRYLFL 693
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 720 EAL M SAQ SR LYISY I GRSI Q DNSER F PSVL VQ EL V DY IG Q S HYL P GD eacncdes ER R VI A HI T CH H SRM PF D P V N YV P D 799
Cdd:TIGR01450 694 EAL L SAQ EQ LYISY V GRSI R DNSER P PSVL LG EL I DY LV Q T HYL D GD -------- SA R LA A RL T EQ H PLQ PF S P Q N FQ P G 765
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 800 ELQ --- SYAREWL P AA KK A GTPQT DF I Q A L EP R AID --- T L TFEQ L Q RFWAHPV R AFFQQRL Q V N F RS E ESE I P D A EPF I 873
Cdd:TIGR01450 766 GRL kpf SYAREWL A AA QA A EGKRP DF D Q P L PG R PAE ppa E L PLAD L I RFWAHPV K AFFQQRL G V S F PW E VET I E D S EPF E 845
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 874 LDGL E R FKL N S QLL NALV -- DEE - D ASK L FR R Y RA S GLLP Y GAFG E I VWDA Q CEEM R A LA DR V - IACR QP AS S I EIDLD C 949
Cdd:TIGR01450 846 LDGL S R YQI N E QLL RFAL qd DEE r D LAQ L AA R L RA R GLLP S GAFG R I FAKE Q QQRA R Q LA TA V l AHRK QP PQ S V EIDLD L 925
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 950 N - G MH LSGWL THVQS DGL L RWR PSM L SVSHG L QL WLEHL VYS ASG HEG ES R LF V RK D G EWRF --- P RMEP EQAL T YLS LY 1025
Cdd:TIGR01450 926 Q d G IR LSGWL GQLYP DGL V RWR YGK L NSPQL L RA WLEHL ILC ASG PPV ES V LF C RK V G RLHI alp P LVPA EQAL A YLS EL 1005
1050 1060 1070 1080 1090 1100
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489959467 1026 I E G YRQGM NK PL LLL P ESGG AW IK A C YDAQ N damltdeasl Q KA RS K FLQ AYEGN MMVR GEGD D 1089
Cdd:TIGR01450 1006 V E L YRQGM RQ PL PFP P KTAL AW AE A R YDAQ D ---------- E KA LK K ARE AYEGN FFRK GEGD A 1059
RecC_C-like
cd22353 C-terminal nuclease-like domain of exodeoxyribonuclease V subunit RecC and similar proteins; ...
835-1118
2.06e-146
C-terminal nuclease-like domain of exodeoxyribonuclease V subunit RecC and similar proteins; Exodeoxyribonuclease V subunit beta (RecC) is part of the RecBCD complex that processes DNA ends resulting from a double-strand break. Its C-terminal domain contacts the two separate strands of the DNA substrate and may be responsible for stabilizing RecD interactions with the complex. It belongs to a superfamily of PDDEXK nucleases including very short patch repair (Vsr) endonucleases, archaeal Holliday junction resolvases, MutH methyl-directed DNA mismatch-repair endonucleases, and catalytic domains of many restriction endonucleases, such as EcoRI, BamHI, and FokI.
Pssm-ID: 411757 [Multi-domain]
Cd Length: 283
Bit Score: 440.05
E-value: 2.06e-146
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 835 TFEQ L Q RFW A HPVR A FFQ Q RL Q V N F RS EE S E I PD A EPF I LDGLER FK LN S QLLNAL VDEE D ASK L FR RYRASG L LPYGAF 914
Cdd:cd22353 1 ELDE L L RFW R HPVR Y FFQ R RL K V F F EQ EE T E L PD E EPF S LDGLER YQ LN Q QLLNAL IEGK D IDQ L YQ RYRASG K LPYGAF 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 915 GE IV W DA Q CE EM RA LA DRVIAC R QPASSI EI D L DC NG MH L S GWL TH VQ S DGLLRWRP SM L SVSH GL Q LWLEHL V Y S A S G H 994
Cdd:cd22353 81 GE LY W EK Q LK EM QE LA EKIRPL R TELKDL EI N L KI NG IR L T GWL KQ VQ Q DGLLRWRP GK L NAKD GL S LWLEHL I Y C A L G G 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 995 E GESRL FV R KDGE WRFP RMEPE QA LT YL SLY IEGY R QGMN K PLLLLP E SGGAW IK ACYD AQ N D a MLT DE ASLQ KAR S K F L 1074
Cdd:cd22353 161 K GESRL IG R NNSI WRFP PLSAD QA KK YL EKL IEGY L QGMN Q PLLLLP K SGGAW LE ACYD KK N Q - IKW DE NTQE KAR K K L L 239
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 489959467 1075 QA YE GN MMVR GEGDD VWY QRL WRT L EP E YFDI I TQE A Q R Y LLPL 1118
Cdd:cd22353 240 QA WN GN YYIS GEGDD PYI QRL IPQ L NE E LIEQ I IKL A E R W LLPL 283
Exonuc_V_gamma
pfam04257 Exodeoxyribonuclease V, gamma subunit; The Exodeoxyribonuclease V enzyme is a multi-subunit ...
2-344
8.07e-127
Exodeoxyribonuclease V, gamma subunit; The Exodeoxyribonuclease V enzyme is a multi-subunit enzyme comprised of the proteins RecB, RecC (this family) and RecD. This enzyme plays an important role in homologous genetic recombination, repair of double strand DNA breaks resistance to UV irradiation and chemical DNA-damage. The enzyme (EC:3.1.11.5) catalyzes ssDNA or dsDNA-dependent ATP hydrolysis, hydrolysis of ssDNA or dsDNA and unwinding of dsDNA. This subunit recognizes and binds DNA forks containing Chi sequences in a sequence specific manner while Chi interactions with the phosphodiester backbone (mainly arginine side chains) stabilize the twisted conformation of the DNA. These interactions induce conformational changes that switch RecBCD from bacteriophage destruction and CRISPR spacer acquisition, to constructive host DNA repair.
Pssm-ID: 461240 [Multi-domain]
Cd Length: 308
Bit Score: 389.75
E-value: 8.07e-127
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 2 L RV Y H SNRL D VL EA L MEYIV e QER L D DPFEPE MV LVQS T GMA Q WL QMS L SQ KFGIAANI D FP L PASF I W EM F VR VL PDI P 81
Cdd:pfam04257 1 L TI Y Q SNRL E VL AE L LAALL - RRP L A DPFEPE II LVQS K GMA R WL TLE L AE KFGIAANI E FP F PASF L W KL F RA VL GKL P 79
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 82 E Q S A F N K QSMA W K LM T LLP DM L ARD EFA M LRHYL N DD T D KR KLFQLA S R T ADL Y DQYL V YR A DWL IR WEAG ELVDG LP EA 161
Cdd:pfam04257 80 E E S P F A K EVLT W R LM R LLP EL L EQP EFA P LRHYL A DD G D QL KLFQLA E R I ADL F DQYL L YR P DWL AA WEAG KSPEA LP AD 159
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 162 QI WQA P LW K ALV EHTGKL gqpkw HRA N LY DR F ISI L ENSAE - R P AR LP S R V F IC GIS A LPP V YL NA L K AL GK H T D I H ILF 240
Cdd:pfam04257 160 EA WQA I LW R ALV AEIKLR ----- HRA R LY ED F LQA L QKEGD k A P KD LP K R L F VF GIS S LPP L YL DI L Q AL AR H I D V H LFL 234
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 241 T NPCR H YWGDI Q D P R W L S RL VT R Q R K R LF EE R avplfkdsenaaqlfdeegiqnlp NPLLASWGK L GRD YIY LL S ditss 320
Cdd:pfam04257 235 L NPCR E YWGDI V D R R E L L RL AE R E R Q R RG EE G ------------------------ NPLLASWGK Q GRD FFD LL E ----- 285
330 340
....*....|....*....|....
gi 489959467 321 g E GDV D A F ADITP DSLL HNI Q L DI 344
Cdd:pfam04257 286 - E LEE D L F VEPEG DSLL SQL Q N DI 308
Name
Accession
Description
Interval
E-value
recC
PRK11069 exodeoxyribonuclease V subunit gamma;
1-1124
0e+00
exodeoxyribonuclease V subunit gamma;
Pssm-ID: 236835 [Multi-domain]
Cd Length: 1122
Bit Score: 2213.60
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 1 M LR VYHSN R LDVL E ALM EYIV E Q E R LDDPFEPEM V LVQS T GMAQWLQM S L S QKFGIAANIDFPLPA S FIW E MF V RVLPDI 80
Cdd:PRK11069 1 M FT VYHSN Q LDVL K ALM VFLI E R E P LDDPFEPEM I LVQS P GMAQWLQM E L A QKFGIAANIDFPLPA T FIW D MF T RVLPDI 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 81 P EQ SAFNK QS M A WKLMTLLP DM L A R D EF AM LRHYL N DD T DKRKLFQLA S R T ADL Y DQYLVYR AD WL IR WEAG E LV D GL PE 160
Cdd:PRK11069 81 P KE SAFNK EA M T WKLMTLLP QL L E R P EF TP LRHYL T DD E DKRKLFQLA A R I ADL F DQYLVYR PE WL AS WEAG Q LV E GL GD 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 161 AQ I WQAPLWKALVE H T GK LGQP K WHRANLY D RFI SI LE NSAER P AR LP S RVFICGISALPPVYL N AL K ALGKH T DIH I LF 240
Cdd:PRK11069 161 AQ P WQAPLWKALVE Y T HQ LGQP R WHRANLY Q RFI ET LE SATTC P PG LP K RVFICGISALPPVYL Q AL Q ALGKH I DIH L LF 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 241 TNPCR H YWGDIQDP RW L SR L VT RQR KRL FE E R AV PLF K DSENA A QLF DEE G I Q NLP NPLLASWGKLGRD YI YLLS DIT SS 320
Cdd:PRK11069 241 TNPCR Y YWGDIQDP AF L AK L LA RQR RHS FE D R EL PLF R DSENA E QLF NSD G E Q DVG NPLLASWGKLGRD NL YLLS QLE SS 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 321 G E gd V DAF A DI T PD S LLHNIQ L DIL D LE NR AV A G ITA EEF A RSD K KR K LDPDDRS IAI HVCHSPQREVE I LHDRLLAML Q 400
Cdd:PRK11069 321 Q E -- L DAF V DI E PD N LLHNIQ A DIL E LE DH AV I G VND EEF S RSD H KR P LDPDDRS LSF HVCHSPQREVE V LHDRLLAML E 398
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 401 D DPTLTPRDI V VMVADIDSYSPFIQAVFG S A TGD RYLP Y AISDRRARQ S HP A LQAFISLLSLPDSRF IS EDVLALL D VP V 480
Cdd:PRK11069 399 A DPTLTPRDI I VMVADIDSYSPFIQAVFG N A PAE RYLP F AISDRRARQ A HP V LQAFISLLSLPDSRF TA EDVLALL E VP A 478
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 481 LAARF N I N EEGLRYLRQWV N ESG V RWG I DDDNV Q E F ELPATGQHTW Q FGLTRMLLGYAMES IH GEW ND VLPYDESSGLIA 560
Cdd:PRK11069 479 LAARF A I T EEGLRYLRQWV E ESG I RWG L DDDNV R E L ELPATGQHTW R FGLTRMLLGYAMES AA GEW QG VLPYDESSGLIA 558
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 561 EL V GHLASLLMQLN R WRR A L M QPRPLEEWLPVCR EM L N DFFLPD S ETEAA M ALIE K QWQAI VD EG VNSH Y HE AVPLSLLR 640
Cdd:PRK11069 559 EL A GHLASLLMQLN I WRR G L A QPRPLEEWLPVCR QL L D DFFLPD A ETEAA L ALIE Q QWQAI IE EG LDAQ Y GD AVPLSLLR 638
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 641 DEL T QRLDQERISQRFLAGPVN I CTLMPMRSIPFKVVCLLGMNDG I YPR A LPPLGFDLMS AQ PKRGDRSRRDDDRYLFLE 720
Cdd:PRK11069 639 DEL A QRLDQERISQRFLAGPVN F CTLMPMRSIPFKVVCLLGMNDG V YPR T LPPLGFDLMS QK PKRGDRSRRDDDRYLFLE 718
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 721 AL M SAQ SR LYISYIGRSIQDNSERFPSVLV Q EL VD YIGQS HY LPGDEA C NCDES ER RV I AH I TC H H S RMPFDP V N YV P D E 800
Cdd:PRK11069 719 AL L SAQ QQ LYISYIGRSIQDNSERFPSVLV S EL LE YIGQS YC LPGDEA L NCDES AA RV K AH L TC L H T RMPFDP Q N FQ P G E 798
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 801 L QSYAREWLPAA KKA G TPQT DF I Q A L EPRAIDT LT FEQ LQRFW A HPVRAFFQ Q RL Q VNFR S EESE I PD A EPF I LDGL E R F 880
Cdd:PRK11069 799 Q QSYAREWLPAA SQQ G KAHP DF V Q P L PFEPPEE LT LDE LQRFW R HPVRAFFQ R RL K VNFR T EESE L PD E EPF T LDGL S R Y 878
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 881 K LN S QLLNAL VDEE DA SK LFRR Y RA S G L LPYGAFGEI V W DA QC E EM RA LADRV I ACRQP AS S I EIDL DC NG MH L S GWL TH 960
Cdd:PRK11069 879 Q LN Q QLLNAL IEQD DA ER LFRR Q RA A G K LPYGAFGEI F W ET QC Q EM QQ LADRV R ACRQP GQ S L EIDL TL NG VQ L T GWL PQ 958
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 961 VQ S DGLLRWRP SM LSV SH GLQLWLEHLVY S ASG HE GESRLF V RK D GEWRFP RMEP EQA LT YLS LY IEGYR Q GM NK PLLLL 1040
Cdd:PRK11069 959 VQ P DGLLRWRP GL LSV AD GLQLWLEHLVY C ASG GN GESRLF G RK E GEWRFP PLAA EQA KQ YLS QL IEGYR E GM SA PLLLL 1038
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 1041 P E SGGAW I KACYD AQ NDA M L T DE ASL QKAR S K F LQA Y EGNMMVRGEGDD VWY QRLWR T L EP E YFDI I TQE AQRYLLPL YK 1120
Cdd:PRK11069 1039 P K SGGAW L KACYD RE NDA I L D DE ETQ QKAR K K L LQA W EGNMMVRGEGDD IYI QRLWR Q L DD E TLEA I IEQ AQRYLLPL FR 1118
....
gi 489959467 1121 FNQS 1124
Cdd:PRK11069 1119 FNQS 1122
RecC
COG1330 Scaffold subunit RecC of the DNA repair enzyme RecBCD (exonuclease V) [Replication, ...
1-1124
0e+00
Scaffold subunit RecC of the DNA repair enzyme RecBCD (exonuclease V) [Replication, recombination and repair];
Pssm-ID: 440941 [Multi-domain]
Cd Length: 1087
Bit Score: 1565.98
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 1 ML RV YHSNRL D VL EA L MEYIVEQER L D DPF E PE MV LVQS T GMA Q WLQ MS L SQK FGIAANI D FPLPASFIW EM F VR VLPD I 80
Cdd:COG1330 1 ML HL YHSNRL E VL AD L LAALLAAQP L A DPF A PE VI LVQS P GMA R WLQ LE L AER FGIAANI E FPLPASFIW QL F RA VLPD V 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 81 PE Q S A F N K QSMA W K LM T LLP DM L ARD EFA M L RH YL N DD T D K RK LF QLA S R T ADL Y DQYLVYR A DWL IR WEAGE L VD - G LP 159
Cdd:COG1330 81 PE E S P F S K EALT W R LM R LLP EL L DEP EFA P L AR YL G DD E D Q RK RY QLA G R L ADL F DQYLVYR P DWL AA WEAGE D VD g P LP 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 160 EA Q I WQA P LW K ALV EH TG K L g Q PK WHRANLY D RFI SI L ENSAE RPA R LP S RVF IC GISALPPVYL NA L K AL GK H T D I H IL 239
Cdd:COG1330 161 DD Q A WQA A LW R ALV AE TG A L - Q SA WHRANLY Q RFI AA L RSGEP RPA G LP E RVF VF GISALPPVYL EV L Q AL AR H I D V H LF 239
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 240 FT NPCR H YWGDI Q D P R W L S RL VT R Q rkrlfeeravplfkdsenaaqlf D EEGIQNLP NPLLASWGK L GRD YIY LL SDITS 319
Cdd:COG1330 240 LL NPCR E YWGDI V D A R E L A RL AA R S ----------------------- D DDDLLEVG NPLLASWGK Q GRD FLD LL AELED 296
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 320 S g EGDV DAF A D IT PD S LLH NI Q L DIL D L ENR A VAG itaeefarsd K KR K L D PDDRS IAI H V CHSP Q REVE I LHD R LLA ML 399
Cdd:COG1330 297 E - SQEI DAF V D PP PD T LLH QL Q A DIL E L RPP A EGA ---------- S KR P L A PDDRS LQV H A CHSP L REVE V LHD Q LLA LF 365
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 400 Q DDPTLTPRDI V VMV A DI DS Y S P F IQAVFG S A TG D - R YL P YA I S DR R ARQ SH P A L Q AF IS LL S LP D SRF ISED VL A LL D V 478
Cdd:COG1330 366 A DDPTLTPRDI L VMV P DI EA Y A P Y IQAVFG Q A PP D p R RI P FS I A DR S ARQ EN P L L A AF LQ LL D LP Q SRF TASE VL D LL E V 445
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 479 P VL A A RF NIN E EG L RY LR Q WV N E S G V RWG I D DDNVQEFE LPAT G Q H TW Q FGL T R M LLGYAM ESIH G E W NDV LPYDE SS GL 558
Cdd:COG1330 446 P AV A R RF GLD E DD L ER LR R WV A E A G I RWG L D AAHRARLG LPAT E Q N TW R FGL D R L LLGYAM GEEA G L W QGI LPYDE VE GL 525
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 559 I AEL V G H LA SL L MQ L NR WR RA L MQ PR P L E EWL PVC R EM L N DFF L PD S E T E A A M A LIEKQWQAIVDEGVNSH Y H E AV PL SL 638
Cdd:COG1330 526 D AEL L G R LA EF L DR L AA WR QR L AE PR T L A EWL ERL R AL L D DFF A PD E E D E W A L A QLRRALAELAEQAAEAG Y D E PL PL AV 605
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 639 L RD E L TQ RLD QERIS QRFLAG P V NI CTLMPMRSIPF K VVCLLGMNDG IY PR AL PPLGFDLM SAQ P K RGDRSRRDDDRYLF 718
Cdd:COG1330 606 V RD A L AA RLD GRPTR QRFLAG G V TF CTLMPMRSIPF R VVCLLGMNDG DF PR QQ PPLGFDLM ARH P R RGDRSRRDDDRYLF 685
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 719 LEAL M SA QS RLYISY I GRSI Q DNSER F PSVLV Q EL V DY IG Q SHY LPGD eacncde S ER R VI AH ITCH H SRM PF D P VNYV P 798
Cdd:COG1330 686 LEAL L SA RE RLYISY V GRSI R DNSER P PSVLV S EL L DY LA Q GFA LPGD ------- S GE R LR AH LVVR H PLQ PF S P RYFE P 758
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 799 D -- E L Q SY AR EWL P AA KKA G T P QTD ---- FI Q A L E P RA - IDTL T FEQ L Q RF WA HPVRAF FQ QRL Q V NFRS EE S E IP DAEP 871
Cdd:COG1330 759 G sp R L F SY DA EWL A AA RAL G Q P RAP appf LA Q P L P P PE p EEEV T LDD L L RF LR HPVRAF LR QRL G V RLPE EE E E LE DAEP 838
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 872 F I LDGLER FK L NSQ LL N AL VDEE D ASK LF R R Y RA S GLLP Y GAFGE IVWDAQC EE MR ALA DRVIACRQ -- P AS S IEI DLD C 949
Cdd:COG1330 839 F E LDGLER YQ L RQR LL E AL LAGD D PAE LF A R L RA R GLLP P GAFGE LLLERLL EE VA ALA AALRPLLA gp P LE S LDV DLD L 918
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 950 N G MH L S GWL TH V QS DGL L RWRP SM L SVSHG L Q LWLEHL VYS A S G HE G ESRLF V RK DG E WR FPRME PE Q A LTY L SLYIEG Y 1029
Cdd:COG1330 919 G G VR L T GWL DG V RG DGL V RWRP GK L KAKDL L R LWLEHL ALC A A G PP G GESVL V GR DG V WR LAPLP PE E A RAL L AELLAL Y 998
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 1030 RQG MNK PL L L L P ESGG AW IK ACY daqndamlt D EASLQ KA RSKFL QA Y EG NMM V R GEGDD VWY QR LW R T L E P - E YFDIIT 1108
Cdd:COG1330 999 RQG LRQ PL P L F P KTAW AW AE ACY --------- D GKTQE KA LEAAR QA W EG GDF V P GEGDD PYL QR VF R G L D P l E LDERFA 1069
1130
....*....|....*.
gi 489959467 1109 QE A Q R Y LLPL YKFNQS 1124
Cdd:COG1330 1070 AL A E R L LLPL LAHLEA 1085
recC
TIGR01450 exodeoxyribonuclease V, gamma subunit; This model describes the gamma subunit of ...
2-1089
0e+00
exodeoxyribonuclease V, gamma subunit; This model describes the gamma subunit of exodeoxyribonuclease V. Species containing this protein should also have the alpha (TIGR01447) and beta (TIGR00609) subunits. Candidates from Borrelia and from the Chlamydias differ dramatically and score between trusted and noise cutoffs. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273633 [Multi-domain]
Cd Length: 1060
Bit Score: 1358.26
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 2 L R V YHSNRLDVL E AL MEYIVEQER LDDPFEPE MV LVQS T GMAQWLQM S L SQKF G I AAN ID FPLPASFIW E MFV R VLP D IP 81
Cdd:TIGR01450 1 F R L YHSNRLDVL A AL LAALLRDPP LDDPFEPE LI LVQS P GMAQWLQM T L AEDL G V AAN LE FPLPASFIW Q MFV A VLP E IP 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 82 E Q SAFNK QS M A W K LM T LLP DM L A R D EF AM LRHYL N DD T D K RK LF QLA S R T ADL Y DQYLVYR A DWL IR WEAG EL V D G LPEA 161
Cdd:TIGR01450 81 E E SAFNK EV M S W R LM A LLP AL L E R P EF RT LRHYL A DD S D L RK RY QLA E R L ADL F DQYLVYR P DWL AA WEAG DD V E G PGDL 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 162 Q I WQA P LW K ALV EHT G KL GQP K w HRANL YD RFI SI L ENSAER P AR LP S R V FI C GISALPP V YL N AL K AL GK H T D I H ILF T 241
Cdd:TIGR01450 161 Q A WQA I LW R ALV AGV G AD GQP T - HRANL HQ RFI ER L RSGTTH P PG LP A R L FI F GISALPP T YL Q AL A AL AQ H C D V H LFL T 239
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 242 NPCR H YWGDI Q D PRW L S RL V TR Q R krl FEERAV PL FK D S E NA A Q lfdeegiqnl PN PLLASWGKLGRD Y IYLL SDITS S G 321
Cdd:TIGR01450 240 NPCR E YWGDI I D FKY L A RL L TR H R --- GADPLL PL RQ D L E EH A A ---------- GH PLLASWGKLGRD F IYLL PELEQ S Q 306
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 322 E gd V DAF ADI TPD S LLH NI Q L DIL D LE N R A V agitaeefars D K K RKLD P D DRSI AI H V CHSP Q REVE I LHDRLLA M L QD 401
Cdd:TIGR01450 307 E -- I DAF LEA TPD T LLH QL Q A DIL H LE P R P V ----------- D A K LPSA P L DRSI QF H A CHSP L REVE V LHDRLLA L L EE 373
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 402 DPTL T PRDI V VMV A DIDSY S P F I Q AVFG S A TG D - R Y LPY AI SDRR A RQ SH P A L Q AFI S LL S LP D SRF ISEDV LALLD V P V 480
Cdd:TIGR01450 374 DPTL Q PRDI I VMV P DIDSY A P Y I E AVFG Q A PV D a R F LPY SL SDRR L RQ RE P L L E AFI H LL D LP E SRF TASEI LALLD I P P 453
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 481 LA ARF N I N E EG L RY LR Q WV N E S G V RWG I D DDNVQ E FE LPAT G QH - TW Q FGL T RMLLGYAM ESIH G E W ND VLPYD ESS GL I 559
Cdd:TIGR01450 454 VR ARF G I D E DD L ET LR R WV A E A G I RWG L D AEHRR E LG LPAT D QH n TW R FGL E RMLLGYAM GEDA G I W QG VLPYD DVG GL Q 533
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 560 AEL V G H LA SL L MQ L NR WRR A L M QPRPLE E WL PVC R EM L NDF F LP D SE TE A A MALI E KQ W QAIVD E GVNSHYHEAV PL SLL 639
Cdd:TIGR01450 534 AEL A G R LA EF L ER L SH WRR G L A QPRPLE Q WL ERL R DL L DAL F AV D DT TE L A LTQL E RE W VDWQA E AAGAQFAQPL PL EVV 613
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 640 RD E L TQR LD Q E RI S Q RFLAG P VN I CTL M PMRSIPF K VVCLLGMNDG I YPR ALP P L GFDLM SAQ P KR GDRSRRDDDRYLFL 719
Cdd:TIGR01450 614 RD H L AAL LD D E PT S A RFLAG G VN F CTL V PMRSIPF R VVCLLGMNDG D YPR QQH P A GFDLM ARE P RK GDRSRRDDDRYLFL 693
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 720 EAL M SAQ SR LYISY I GRSI Q DNSER F PSVL VQ EL V DY IG Q S HYL P GD eacncdes ER R VI A HI T CH H SRM PF D P V N YV P D 799
Cdd:TIGR01450 694 EAL L SAQ EQ LYISY V GRSI R DNSER P PSVL LG EL I DY LV Q T HYL D GD -------- SA R LA A RL T EQ H PLQ PF S P Q N FQ P G 765
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 800 ELQ --- SYAREWL P AA KK A GTPQT DF I Q A L EP R AID --- T L TFEQ L Q RFWAHPV R AFFQQRL Q V N F RS E ESE I P D A EPF I 873
Cdd:TIGR01450 766 GRL kpf SYAREWL A AA QA A EGKRP DF D Q P L PG R PAE ppa E L PLAD L I RFWAHPV K AFFQQRL G V S F PW E VET I E D S EPF E 845
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 874 LDGL E R FKL N S QLL NALV -- DEE - D ASK L FR R Y RA S GLLP Y GAFG E I VWDA Q CEEM R A LA DR V - IACR QP AS S I EIDLD C 949
Cdd:TIGR01450 846 LDGL S R YQI N E QLL RFAL qd DEE r D LAQ L AA R L RA R GLLP S GAFG R I FAKE Q QQRA R Q LA TA V l AHRK QP PQ S V EIDLD L 925
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 950 N - G MH LSGWL THVQS DGL L RWR PSM L SVSHG L QL WLEHL VYS ASG HEG ES R LF V RK D G EWRF --- P RMEP EQAL T YLS LY 1025
Cdd:TIGR01450 926 Q d G IR LSGWL GQLYP DGL V RWR YGK L NSPQL L RA WLEHL ILC ASG PPV ES V LF C RK V G RLHI alp P LVPA EQAL A YLS EL 1005
1050 1060 1070 1080 1090 1100
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489959467 1026 I E G YRQGM NK PL LLL P ESGG AW IK A C YDAQ N damltdeasl Q KA RS K FLQ AYEGN MMVR GEGD D 1089
Cdd:TIGR01450 1006 V E L YRQGM RQ PL PFP P KTAL AW AE A R YDAQ D ---------- E KA LK K ARE AYEGN FFRK GEGD A 1059
RecC_C-like
cd22353 C-terminal nuclease-like domain of exodeoxyribonuclease V subunit RecC and similar proteins; ...
835-1118
2.06e-146
C-terminal nuclease-like domain of exodeoxyribonuclease V subunit RecC and similar proteins; Exodeoxyribonuclease V subunit beta (RecC) is part of the RecBCD complex that processes DNA ends resulting from a double-strand break. Its C-terminal domain contacts the two separate strands of the DNA substrate and may be responsible for stabilizing RecD interactions with the complex. It belongs to a superfamily of PDDEXK nucleases including very short patch repair (Vsr) endonucleases, archaeal Holliday junction resolvases, MutH methyl-directed DNA mismatch-repair endonucleases, and catalytic domains of many restriction endonucleases, such as EcoRI, BamHI, and FokI.
Pssm-ID: 411757 [Multi-domain]
Cd Length: 283
Bit Score: 440.05
E-value: 2.06e-146
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 835 TFEQ L Q RFW A HPVR A FFQ Q RL Q V N F RS EE S E I PD A EPF I LDGLER FK LN S QLLNAL VDEE D ASK L FR RYRASG L LPYGAF 914
Cdd:cd22353 1 ELDE L L RFW R HPVR Y FFQ R RL K V F F EQ EE T E L PD E EPF S LDGLER YQ LN Q QLLNAL IEGK D IDQ L YQ RYRASG K LPYGAF 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 915 GE IV W DA Q CE EM RA LA DRVIAC R QPASSI EI D L DC NG MH L S GWL TH VQ S DGLLRWRP SM L SVSH GL Q LWLEHL V Y S A S G H 994
Cdd:cd22353 81 GE LY W EK Q LK EM QE LA EKIRPL R TELKDL EI N L KI NG IR L T GWL KQ VQ Q DGLLRWRP GK L NAKD GL S LWLEHL I Y C A L G G 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 995 E GESRL FV R KDGE WRFP RMEPE QA LT YL SLY IEGY R QGMN K PLLLLP E SGGAW IK ACYD AQ N D a MLT DE ASLQ KAR S K F L 1074
Cdd:cd22353 161 K GESRL IG R NNSI WRFP PLSAD QA KK YL EKL IEGY L QGMN Q PLLLLP K SGGAW LE ACYD KK N Q - IKW DE NTQE KAR K K L L 239
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 489959467 1075 QA YE GN MMVR GEGDD VWY QRL WRT L EP E YFDI I TQE A Q R Y LLPL 1118
Cdd:cd22353 240 QA WN GN YYIS GEGDD PYI QRL IPQ L NE E LIEQ I IKL A E R W LLPL 283
Exonuc_V_gamma
pfam04257 Exodeoxyribonuclease V, gamma subunit; The Exodeoxyribonuclease V enzyme is a multi-subunit ...
2-344
8.07e-127
Exodeoxyribonuclease V, gamma subunit; The Exodeoxyribonuclease V enzyme is a multi-subunit enzyme comprised of the proteins RecB, RecC (this family) and RecD. This enzyme plays an important role in homologous genetic recombination, repair of double strand DNA breaks resistance to UV irradiation and chemical DNA-damage. The enzyme (EC:3.1.11.5) catalyzes ssDNA or dsDNA-dependent ATP hydrolysis, hydrolysis of ssDNA or dsDNA and unwinding of dsDNA. This subunit recognizes and binds DNA forks containing Chi sequences in a sequence specific manner while Chi interactions with the phosphodiester backbone (mainly arginine side chains) stabilize the twisted conformation of the DNA. These interactions induce conformational changes that switch RecBCD from bacteriophage destruction and CRISPR spacer acquisition, to constructive host DNA repair.
Pssm-ID: 461240 [Multi-domain]
Cd Length: 308
Bit Score: 389.75
E-value: 8.07e-127
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 2 L RV Y H SNRL D VL EA L MEYIV e QER L D DPFEPE MV LVQS T GMA Q WL QMS L SQ KFGIAANI D FP L PASF I W EM F VR VL PDI P 81
Cdd:pfam04257 1 L TI Y Q SNRL E VL AE L LAALL - RRP L A DPFEPE II LVQS K GMA R WL TLE L AE KFGIAANI E FP F PASF L W KL F RA VL GKL P 79
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 82 E Q S A F N K QSMA W K LM T LLP DM L ARD EFA M LRHYL N DD T D KR KLFQLA S R T ADL Y DQYL V YR A DWL IR WEAG ELVDG LP EA 161
Cdd:pfam04257 80 E E S P F A K EVLT W R LM R LLP EL L EQP EFA P LRHYL A DD G D QL KLFQLA E R I ADL F DQYL L YR P DWL AA WEAG KSPEA LP AD 159
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 162 QI WQA P LW K ALV EHTGKL gqpkw HRA N LY DR F ISI L ENSAE - R P AR LP S R V F IC GIS A LPP V YL NA L K AL GK H T D I H ILF 240
Cdd:pfam04257 160 EA WQA I LW R ALV AEIKLR ----- HRA R LY ED F LQA L QKEGD k A P KD LP K R L F VF GIS S LPP L YL DI L Q AL AR H I D V H LFL 234
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 241 T NPCR H YWGDI Q D P R W L S RL VT R Q R K R LF EE R avplfkdsenaaqlfdeegiqnlp NPLLASWGK L GRD YIY LL S ditss 320
Cdd:pfam04257 235 L NPCR E YWGDI V D R R E L L RL AE R E R Q R RG EE G ------------------------ NPLLASWGK Q GRD FFD LL E ----- 285
330 340
....*....|....*....|....
gi 489959467 321 g E GDV D A F ADITP DSLL HNI Q L DI 344
Cdd:pfam04257 286 - E LEE D L F VEPEG DSLL SQL Q N DI 308
RecC_C
pfam17946 RecC C-terminal domain; This entry corresponds to the C-terminal domain of the RecC protein. ...
832-1052
4.93e-75
RecC C-terminal domain; This entry corresponds to the C-terminal domain of the RecC protein. This domain has a PD(D/E)XK like fold. Deleting this domain eliminates RecD assembly within the RecBCD complex.
Pssm-ID: 436165 [Multi-domain]
Cd Length: 223
Bit Score: 247.19
E-value: 4.93e-75
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 832 DTL T FEQ L Q RF WAH P V RAF FQ QRL Q V NFRS EE SEIP DAEPF I LDGLER FK L NSQ LL N AL VDEE D ASK L FR R Y RA S GLLP Y 911
Cdd:pfam17946 2 AEV T LDD L I RF LRN P A RAF LR QRL G V RLPE EE EALE DAEPF A LDGLER WQ L GDR LL E AL LAGA D LEA L LA R L RA R GLLP P 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 912 GAFGE IVWDAQCE E MR ALA D R VI A CRQ -- P ASSIEI DLD CN G MH L S GWL THVQSD GLLRWR P S M L SVSHG L QL WLEHL VY 989
Cdd:pfam17946 82 GAFGE LLLEELLA E VQ ALA E R LR A LLG gg P LRPLDV DLD LG G GR L T GWL GGLRRR GLLRWR Y S R L KAKDL L RA WLEHL AL 161
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489959467 990 S A S G H EG ESR L f V R KDGEW R FPRMEPEQ A LTY L SLYIEG YRQG MNK PL LLL P ESGG A WIK A CY 1052
Cdd:pfam17946 162 C A A G P EG TTL L - G R DGSDL R LAPLPADD A REL L AQLLAL YRQG LRR PL PFF P KTAW A YAE A LA 223
AddB
COG3857 ATP-dependent helicase/DNAse subunit B [Replication, recombination and repair];
335-902
5.25e-27
ATP-dependent helicase/DNAse subunit B [Replication, recombination and repair];
Pssm-ID: 443066 [Multi-domain]
Cd Length: 1019
Bit Score: 119.08
E-value: 5.25e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 335 S L LHNIQLDILDLENRAV A GITAEE FA RSDKK rkldp DDRS I A I HVCHSPQR EVE ILHDRLLAMLQDD p TLTP RDI V V M V 414
Cdd:COG3857 240 E L AKENGVEVEFKKSPEL A HLERNL FA YPPEE ----- EPEG I E I IEAANRRA EVE AVAREIRRLVREE - GYRY RDI A V V V 313
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 415 A D IDS Y S P F I QA VF gsatg DR Y - L PY A I SDR R ARQS HP ALQAFI SLL S L PD S R F IS EDV LA LL DVPV L aar FNINE E GLR 493
Cdd:COG3857 314 R D LEA Y A P L I ER VF ----- AE Y g I PY F I DEK R PLSH HP LVELIL SLL E L VR S N F RY EDV FR LL KTGL L --- RPLSR E EID 385
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 494 Y L RQW V NES G V R WGIDDDNVQ E F E LPA T GQHTWQFGLTRM L LGYAM E SIHGEWNDV lpyd ESSGLIA E LVGH L ASL L MQ L 573
Cdd:COG3857 386 R L ENY V LAY G I R GRRWLERYL E E E EEL T DEEEEDLERLNE L RDRLL E PLLPLRERL ---- KKAKTVR E WAEA L YEF L EE L 461
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 574 N r WRRA L MQP R PL EE wlpvcreml NDFFLPDS E T E A A M alie KQWQAIV DE G V NSHYH E AVP L SLLRDE L TQR L DQERIS 653
Cdd:COG3857 462 G - VPEK L EEW R EA EE --------- AGDLEEAR E H E Q A W ---- NALIELL DE L V EVLGD E KLS L EEFLRI L ESG L EELTFG 527
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 654 QRFLA - GP V NICT L MPM R SIP FK V V CL LG M N D G IY P RALPPL G F ------ DLMSAQPKRGDRSR R DDDR --- Y LF LE AL M 723
Cdd:COG3857 528 LIPPS l DQ V QVGG L DRA R GLD FK A V FV LG L N E G VF P ARPRED G L lsdeer ERLNELGLELPPTS R ERLL eer F LF YR AL T 607
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 724 S A QS RLY I SY i GRSIQDNSERF PS V L VQE L VD yigqsh YL P GD E ACNCD E S E RRV I AH itchhsrmpfdpvnyv P DELQ S 803
Cdd:COG3857 608 R A SE RLY L SY - PLADEEGKALL PS P L IDR L RE ------ LF P EL E ERSLL E E E LEY I GT ---------------- P ESAL S 664
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489959467 804 YAREW L PAAKK A gtpqt DFIQAL e PRAIDT L TFEQ L QRFW A H P VRA F FQQR L QV nfrs E E S E IPDAEPFIL ----- DG LE 878
Cdd:COG3857 665 ELAAA L RQLEL A ----- PLWWDV - YKWLLK L SVSR L ETYA A C P FQF F LRYG L KL ---- K E R E EYELDAPDR gtlfh AV LE 734
570 580
....*....|....*....|....*..
gi 489959467 879 RF --- KLNSQ L LN A LVDE E DASK L FRR 902
Cdd:COG3857 735 RF yke LKEEG L DW A DLSD E ELEE L LEE 761
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
