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Conserved domains on  [gi|489966319|ref|WP_003869563|]
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MULTISPECIES: methionine ABC transporter permease [Thermoanaerobacter]

Protein Classification

methionine ABC transporter permease( domain architecture ID 10005172)

methionine ABC transporter permease is the transmembrane (TM) subunit of the ABC transporter complex, such as MetNPQ, that is involved in methionine import, and is responsible for the translocation of the substrate across the membrane

EC:  7.4.2.11
Gene Ontology:  GO:0033232|GO:0048473|GO:0042626
PubMed:  22095702|11421270|25750732|24638992
TCDB:  3.A.1.24

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MetP COG2011
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ...
 1-215 8.55e-107

ABC-type methionine transport system, permease component [Amino acid transport and metabolism];


:

Pssm-ID: 441614  Cd Length: 220  Bit Score: 306.21  E-value: 8.55e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489966319   1 MSETINLLLVGTWQTIYMVVVSTLIATIFGVPLGVLLMVTDKDQILHNEPLNKILGTIVNIFRSVPFVILLIVLIPFTRL 80
Cdd:COG2011    5 WSELWPLLLQATGETLYMVGVSTLIAVLLGLPLGVLLVLTRPGGLLPNPVLYRVLGVIVNIFRSIPFIILLVALIPLTRL 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489966319  81 LVGKAIGTTAAIVPLSVAAIPFMGRLTETALREVDRGVIEAAQSMGASPFQIITKVLIPEALPSIAAGVTITTINLVGYS 160
Cdd:COG2011   85 IVGTSIGTTAAIVPLTIAAIPFFARLVENALREVDPGVIEAAQAMGASPWQIIFKVLLPEALPSLILGLTVTLISLIGYS 164

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 489966319 161 AMAGVIGGGGLGDLAVRYGYQRFMLDIMLYTVAILVAMVQLIQFLGDILVKHLSR 215
Cdd:COG2011  165 AMAGAVGGGGLGDLAIRYGYQRFDTDVMLVTVVILIVLVQIIQFLGDRLARRLDH 219
 
Name Accession Description Interval E-value
MetP COG2011
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ...
 1-215 8.55e-107

ABC-type methionine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 441614  Cd Length: 220  Bit Score: 306.21  E-value: 8.55e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489966319   1 MSETINLLLVGTWQTIYMVVVSTLIATIFGVPLGVLLMVTDKDQILHNEPLNKILGTIVNIFRSVPFVILLIVLIPFTRL 80
Cdd:COG2011    5 WSELWPLLLQATGETLYMVGVSTLIAVLLGLPLGVLLVLTRPGGLLPNPVLYRVLGVIVNIFRSIPFIILLVALIPLTRL 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489966319  81 LVGKAIGTTAAIVPLSVAAIPFMGRLTETALREVDRGVIEAAQSMGASPFQIITKVLIPEALPSIAAGVTITTINLVGYS 160
Cdd:COG2011   85 IVGTSIGTTAAIVPLTIAAIPFFARLVENALREVDPGVIEAAQAMGASPWQIIFKVLLPEALPSLILGLTVTLISLIGYS 164

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 489966319 161 AMAGVIGGGGLGDLAVRYGYQRFMLDIMLYTVAILVAMVQLIQFLGDILVKHLSR 215
Cdd:COG2011  165 AMAGAVGGGGLGDLAIRYGYQRFDTDVMLVTVVILIVLVQIIQFLGDRLARRLDH 219
PRK10782 PRK10782
D-methionine ABC transporter permease MetI;
1-215 8.84e-62

D-methionine ABC transporter permease MetI;


Pssm-ID: 182726  Cd Length: 217  Bit Score: 191.87  E-value: 8.84e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489966319   1 MSETINLLLV-GTWQTIYMVVVSTLIATIFGVPLGVLLMVTDKDQILHNEPLNKILGTIVNIFRSVPFVILLIVLIPFTR 79
Cdd:PRK10782   1 MSEAMMWLLVrGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTLSALVNIFRSIPFIILLVWMIPFTR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489966319  80 LLVGKAIGTTAAIVPLSVAAIPFMGRLTETALREVDRGVIEAAQSMGASPFQIITKVLIPEALPSIAAGVTITTINLVGY 159
Cdd:PRK10782  81 VIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGY 160

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 489966319 160 SAMAGVIGGGGLGDLAVRYGYQRFMLDIMLYTVAILVAMVQLIQFLGDILVKHLSR 215
Cdd:PRK10782 161 SAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTH 216
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 13-202 1.82e-14

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 68.84  E-value: 1.82e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489966319  13 WQTIYMVVVSTLIATIFGVPLGVLLMVTDKdqilhnePLNKILGTIVNIFRSVPFVILLIVLIPFTRLLVGKAIG---TT 89
Cdd:cd06261    2 LNTLLLALIATLLALVLGLLLGIILARKRG-------KLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILpglGL 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489966319  90 AAIVPLSVAAIPFMGRLTETALREVDRGVIEAAQSMGASPFQIITKVLIPEALPSIAAGVTITTINLVGYSAMAGVIGGG 169
Cdd:cd06261   75 PALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGG 154

                        170       180       190
                 ....*....|....*....|....*....|...
gi 489966319 170 GLGDLAVRYGYQRFMLDIMLYTVAILVAMVQLI 202
Cdd:cd06261  155 EAPGPGTGLLLIFAILFPGDLGVAAAVALILLL 187
PhnE TIGR01097
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound ...
 8-147 3.60e-14

phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions]


Pssm-ID: 273441 [Multi-domain]  Cd Length: 250  Bit Score: 69.11  E-value: 3.60e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489966319    8 LLVGTWQTIYMVVVSTLIATIFGVPLGVLLMVTdkdqILHNEPLNKILGTIVNIFRSVPFVILLIVLIPftrlLVGkaIG 87
Cdd:TIGR01097  56 ILKALLETLAMAILGTVLAAVLAVPLALLAARN----ITPSPWLYGLARLLLNFLRAIPELVWALIFVA----AVG--LG 125

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 489966319   88 TTAAIVPLSVAAIPFMGRLTETALREVDRGVIEAAQSMGASPFQIITKVLIPEALPSIAA 147
Cdd:TIGR01097 126 PFAGVLALAFHTVGFLGKLFAEAIEEVDPGPVEALRATGASKLQVIRYGVLPQVLPQFLS 185
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 47-215 2.92e-13

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 65.40  E-value: 2.92e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489966319   47 HNEPLNKILGTIVNIFRSVPFVILLIVLIPFTRLLVGKAiGTTAAIVPLSVAAIPFMGRLTETALREVDRGVIEAAQSMG 126
Cdd:pfam00528  12 RGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGH-GILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALG 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489966319  127 ASPFQIITKVLIPEALPSIAAGVTITTINLVGYSAMAGVIGGGGLGDLAVRYGYQRFMLDIMLYTVAILVAMVQLIQFLG 206
Cdd:pfam00528  91 ASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLV 170


                  ....*....
gi 489966319  207 DILVKHLSR 215
Cdd:pfam00528 171 DILQRLLDP 179
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 15-149 3.77e-05

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 42.92  E-value: 3.77e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489966319  15 TIYMVVVSTLIATIFGVPLGVLLMvtdkdqiLHNEPLNKILGTIVNIFRSVPFVIL-LIVLIPFTRL----LVGKAIGTT 89
Cdd:NF038017   1 SLRVSGTATLIAALIGIPLGALLA-------LRRFPGRRLVISLLNTLMGLPPVVVgLIVYLLLSRSgplgFLGLLYTPT 73

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 489966319  90 AAIVPLSVAAIPFMGRLTETALREVDRGVIEAAQSMGASPFQIITkVLIPEALPSIAAGV 149
Cdd:NF038017  74 AMIIAQAVLALPIVAGLTLAAVQGLDPELRLQILSLGATRWQALW-TLLKEARFALLAAV 132
 
Name Accession Description Interval E-value
MetP COG2011
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ...
 1-215 8.55e-107

ABC-type methionine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 441614  Cd Length: 220  Bit Score: 306.21  E-value: 8.55e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489966319   1 MSETINLLLVGTWQTIYMVVVSTLIATIFGVPLGVLLMVTDKDQILHNEPLNKILGTIVNIFRSVPFVILLIVLIPFTRL 80
Cdd:COG2011    5 WSELWPLLLQATGETLYMVGVSTLIAVLLGLPLGVLLVLTRPGGLLPNPVLYRVLGVIVNIFRSIPFIILLVALIPLTRL 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489966319  81 LVGKAIGTTAAIVPLSVAAIPFMGRLTETALREVDRGVIEAAQSMGASPFQIITKVLIPEALPSIAAGVTITTINLVGYS 160
Cdd:COG2011   85 IVGTSIGTTAAIVPLTIAAIPFFARLVENALREVDPGVIEAAQAMGASPWQIIFKVLLPEALPSLILGLTVTLISLIGYS 164

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 489966319 161 AMAGVIGGGGLGDLAVRYGYQRFMLDIMLYTVAILVAMVQLIQFLGDILVKHLSR 215
Cdd:COG2011  165 AMAGAVGGGGLGDLAIRYGYQRFDTDVMLVTVVILIVLVQIIQFLGDRLARRLDH 219
PRK10782 PRK10782
D-methionine ABC transporter permease MetI;
1-215 8.84e-62

D-methionine ABC transporter permease MetI;


Pssm-ID: 182726  Cd Length: 217  Bit Score: 191.87  E-value: 8.84e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489966319   1 MSETINLLLV-GTWQTIYMVVVSTLIATIFGVPLGVLLMVTDKDQILHNEPLNKILGTIVNIFRSVPFVILLIVLIPFTR 79
Cdd:PRK10782   1 MSEAMMWLLVrGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTLSALVNIFRSIPFIILLVWMIPFTR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489966319  80 LLVGKAIGTTAAIVPLSVAAIPFMGRLTETALREVDRGVIEAAQSMGASPFQIITKVLIPEALPSIAAGVTITTINLVGY 159
Cdd:PRK10782  81 VIVGTSIGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGY 160

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 489966319 160 SAMAGVIGGGGLGDLAVRYGYQRFMLDIMLYTVAILVAMVQLIQFLGDILVKHLSR 215
Cdd:PRK10782 161 SAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTH 216
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 12-168 3.58e-21

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 87.03  E-value: 3.58e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489966319  12 TWQTIYMVVVSTLIATIFGVPLGVLlmvtdkdqILHNEPLNKILGTIVNIFRSVPFVILLIVLIPFTrllvgkAIGTTAA 91
Cdd:COG1174   20 LLEHLLLVLLALLIALLIAVPLGIL--------ITRRRRLAGLVLGVANILQTIPSLALLALLIPLL------GIGPAPA 85

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489966319  92 IVPLSVAAIPFMGRLTETALREVDRGVIEAAQSMGASPFQIITKVLIPEALPSIAAGVTITTINLVGYSAMAGVIGG 168
Cdd:COG1174   86 IIALVLYALLPILRNTYTGLRSVDPAVVEAARGMGMTPWQRLWRVELPLALPVILAGIRTAAVQNIGTATLAALIGA 162
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 8-151 5.06e-17

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 76.73  E-value: 5.06e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489966319   8 LLVGTWQTIYMVVVSTLIATIFGVPLGVLlmvtdkdqILHNEPLNKILGTIVNIFRSVPFVILLIVLIpftrLLVGkaIG 87
Cdd:COG0600   59 LWEHLLASLLRVLLGFALAALLGVPLGLL--------LGLSRLLRRLLDPLLVFLRPIPPLALAPLLI----LWFG--IG 124

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 489966319  88 TTAAIVPLSVAAIPFMGRLTETALREVDRGVIEAAQSMGASPFQIITKVLIPEALPSIAAGVTI 151
Cdd:COG0600  125 EASKIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTGLRI 188
PhnE COG3639
ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport ...
 5-147 1.62e-15

ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 442856 [Multi-domain]  Cd Length: 244  Bit Score: 72.42  E-value: 1.62e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489966319   5 INLLLVGTWQTIYMVVVSTLIATIFGVPLGVLLMVTdkdqILHNEPLNKILGTIVNIFRSVPFVILLIVLIPftrlLVGk 84
Cdd:COG3639   46 LPDLLSALLETLAIALLGTLLGAVLALPLAFLAARN----LAPNPWVRLLARRLLNVLRAIPELVWALIFVA----AVG- 116

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489966319  85 aIGTTAAIVPLSVAAIPFMGRLTETALREVDRGVIEAAQSMGASPFQIITKVLIPEALPSIAA 147
Cdd:COG3639  117 -LGPFAGVLALAIHTIGFLGKLFAEAIEEIDPGPVEALRATGASRLQVIRYGVLPQVLPQFLS 178
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 13-202 1.82e-14

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 68.84  E-value: 1.82e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489966319  13 WQTIYMVVVSTLIATIFGVPLGVLLMVTDKdqilhnePLNKILGTIVNIFRSVPFVILLIVLIPFTRLLVGKAIG---TT 89
Cdd:cd06261    2 LNTLLLALIATLLALVLGLLLGIILARKRG-------KLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILpglGL 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489966319  90 AAIVPLSVAAIPFMGRLTETALREVDRGVIEAAQSMGASPFQIITKVLIPEALPSIAAGVTITTINLVGYSAMAGVIGGG 169
Cdd:cd06261   75 PALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGG 154

                        170       180       190
                 ....*....|....*....|....*....|...
gi 489966319 170 GLGDLAVRYGYQRFMLDIMLYTVAILVAMVQLI 202
Cdd:cd06261  155 EAPGPGTGLLLIFAILFPGDLGVAAAVALILLL 187
PhnE TIGR01097
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound ...
 8-147 3.60e-14

phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions]


Pssm-ID: 273441 [Multi-domain]  Cd Length: 250  Bit Score: 69.11  E-value: 3.60e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489966319    8 LLVGTWQTIYMVVVSTLIATIFGVPLGVLLMVTdkdqILHNEPLNKILGTIVNIFRSVPFVILLIVLIPftrlLVGkaIG 87
Cdd:TIGR01097  56 ILKALLETLAMAILGTVLAAVLAVPLALLAARN----ITPSPWLYGLARLLLNFLRAIPELVWALIFVA----AVG--LG 125

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 489966319   88 TTAAIVPLSVAAIPFMGRLTETALREVDRGVIEAAQSMGASPFQIITKVLIPEALPSIAA 147
Cdd:TIGR01097 126 PFAGVLALAFHTVGFLGKLFAEAIEEVDPGPVEALRATGASKLQVIRYGVLPQVLPQFLS 185
PstC COG0573
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 8-149 2.89e-13

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440338 [Multi-domain]  Cd Length: 303  Bit Score: 67.04  E-value: 2.89e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489966319   8 LLVGTwqtiymvVVSTLIATIFGVPLGVL--LMVTDkdqiLHNEPLNKILGTIVNIFRSVPFVIL----LIVLIPFTRLL 81
Cdd:COG0573   78 LIVGT-------LLVSLIALLIAVPLGLGiaIFLSE----YAPPRLRRILKPAIELLAGIPSVVYgfwgLFVLVPLLRDL 146

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 489966319  82 VGKAIGT----TAAIVpLSVAAIPFMGRLTETALREVDRGVIEAAQSMGASPFQIITKVLIPEALPSIAAGV 149
Cdd:COG0573  147 FPWPPSGfsllTAGIV-LAIMILPTITSLSRDALRAVPRSLREAALALGATRWETIRKVVLPAARSGIIAAV 217
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 47-215 2.92e-13

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 65.40  E-value: 2.92e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489966319   47 HNEPLNKILGTIVNIFRSVPFVILLIVLIPFTRLLVGKAiGTTAAIVPLSVAAIPFMGRLTETALREVDRGVIEAAQSMG 126
Cdd:pfam00528  12 RGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGH-GILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALG 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489966319  127 ASPFQIITKVLIPEALPSIAAGVTITTINLVGYSAMAGVIGGGGLGDLAVRYGYQRFMLDIMLYTVAILVAMVQLIQFLG 206
Cdd:pfam00528  91 ASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLV 170


                  ....*....
gi 489966319  207 DILVKHLSR 215
Cdd:pfam00528 171 DILQRLLDP 179
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 1-163 4.12e-13

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 65.48  E-value: 4.12e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489966319   1 MSETINLLLVGTWQTIYMVVVSTLIATIFGVPLGVLlmvtdkdQILHNEPLNKILGTIVNIFRSVPFVILLIVL---IPF 77
Cdd:COG0765    8 LLDYLPLLLEGLLVTLLLTVLAIVLGLVLGLLLALA-------RLSPNPVLRWLATAYVEFFRGTPLLVQLFFIyfgLPL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489966319  78 TRLLVGkaiGTTAAIVPLSVAAIPFMGRLTETALREVDRGVIEAAQSMGASPFQIITKVLIPEALPSIAAGVTITTINLV 157
Cdd:COG0765   81 LGIDLS---PFVAAVIALTLNSAAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIILPQALRIILPPLGNEFISLL 157


                 ....*.
gi 489966319 158 GYSAMA 163
Cdd:COG0765  158 KDTSLV 163
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 8-152 3.53e-12

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 63.59  E-value: 3.53e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489966319   8 LLVGTWQTIYMVVVSTLIATIFGVPLGVLLMVTDKdqilhnePLNKILGTIVNIFRSVPFVILLIVLIPFTRLlvgkaiG 87
Cdd:COG1173   74 LLYGARISLLVGLLAVLIALVIGVLLGLLAGYFGG-------WVDAVLMRLVDVLLAFPSLLLAIALVAVLGP------G 140

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489966319  88 TTAAIVPLSVAAIPFMGRLTET-ALREVDRGVIEAAQSMGASPFQIITKVLIPEALPSIAAGVTIT 152
Cdd:COG1173  141 LLNVILALGLTGWPGYARLVRAqVLSLREREYVEAARALGASPLRIIFRHILPNVLPPLIVQATLG 206
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 15-152 8.94e-12

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 62.46  E-value: 8.94e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489966319  15 TIYMVVVSTLIATIFGVPLGVLLmvtdkdqILHNEPLNKILGTIVNIFRSVP-FVILLIVLIPF-TRLLVGKAIG----- 87
Cdd:COG0555   59 SLGTALIAALINLVFGLPLAWVL-------VRYRFPGKRLVDALVDLPFALPtAVAGIALLLLFgPNGWLGQLLAplgik 131

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489966319  88 ----TTAAIVPLSVAAIPFMGRLTETALREVDRGVIEAAQSMGASPFQIITKVLIPEALPSIAAGVTIT 152
Cdd:COG0555  132 vaftPLGIVLAQTFVSLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALA 200
PRK10952 PRK10952
proline/glycine betaine ABC transporter permease ProW;
10-152 9.78e-10

proline/glycine betaine ABC transporter permease ProW;


Pssm-ID: 236805  Cd Length: 355  Bit Score: 57.41  E-value: 9.78e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489966319  10 VGTWQ----TIYMVVVSTLIATIFGVPLGVLLMvtdkdqilHNEPLNKILGTIVNIFRSVP-FVILLIVLIPFtrllvgk 84
Cdd:PRK10952 140 IGAWSqamvTLALVLTALLFCIVIGLPLGIWLA--------RSPRAAKIIRPLLDAMQTTPaFVYLVPIVMLF------- 204

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489966319  85 AIGTTAAIVPLSVAAIPFMGRLTETALREVDRGVIEAAQSMGASPFQIITKVLIPEALPSIAAGVTIT 152
Cdd:PRK10952 205 GIGNVPGVVVTIIFALPPIVRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQT 272
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 8-148 1.74e-09

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 55.89  E-value: 1.74e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489966319   8 LLVGTWQTIYMVVVSTLIATIFGVPLGVLLmvtdkdqILHNEPLNKILGTIVNIFRSVPFVILLIVLIPFTRLLvGKAIG 87
Cdd:COG1177   59 LLDALLNSLLIALLSTLLATVLGTPAALAL-------ARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSAL-GLSGG 130

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489966319  88 TTAAIVPLSVAAIPFMGRLTETALREVDRGVIEAAQSMGASPFQIITKVLIPEALPSIAAG 148
Cdd:COG1177  131 LWGLILAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAG 191
phosphate_pstC TIGR02138
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ...
 16-149 4.01e-09

phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273992 [Multi-domain]  Cd Length: 295  Bit Score: 55.35  E-value: 4.01e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489966319   16 IYMVVVSTLIATIFGVPLGVLLMVTDKDqiLHNEPLNKILGTIVNIFRSVPFVIL----LIVLIPFTRLLVGKAIGTT-- 89
Cdd:TIGR02138  65 IVGTLITSLIALLIAVPVGIGIAIFLSE--IAPKRVRSVLKPVVELLAGIPSVVYgfwgLFVLVPFLKPHFQPFLGSNlg 142

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489966319   90 ----------AAIVPLSVAAIPFMGRLTETALREVDRGVIEAAQSMGASPFQIITKVLIPEALPSIAAGV 149
Cdd:TIGR02138 143 liplfggpilTAGIVLAIMILPTIASISRDALRAVPRSYKEASYALGATKWETIRRVILPAARSGIVGAV 212
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
12-148 6.14e-09

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 55.17  E-value: 6.14e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489966319  12 TWQTIYMVVVSTLIATIFGVPLGVLLmvtdkdqILHNEPLNKILGTIVNIFRSVPFVIL-LIVLIPFTRLLVGKAIGTTA 90
Cdd:COG1178  340 LLNSLLLALLAALLAVLLALLLAYLV-------RRRRGRLARLLDRLAMLPYAVPGIVLgLGLLLLFNRPLPLLLYGTLA 412

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 489966319  91 AIV-PLSVAAIPFMGRLTETALREVDRGVIEAAQSMGASPFQIITKVLIPEALPSIAAG 148
Cdd:COG1178  413 ILVlAYVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAA 471
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 101-152 1.45e-07

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 50.77  E-value: 1.45e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 489966319 101 PFMGRLTETALREVDRGVIEAAQSMGASPFQIITKVLIPEALPSIAAGVTIT 152
Cdd:PRK15050 174 PFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLC 225
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
12-152 2.13e-07

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 50.54  E-value: 2.13e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489966319  12 TWQTIYMVVVSTLIATIFGVPLGVLLMVTDKdqilhnePLNKILGTIVNIFRSVPFVILLIVLI-------PFTRLLVGK 84
Cdd:COG1178   56 LGNTLLLALLVTLLSLLLGVPLAWLLARTDF-------PGRRLLRWLLLLPLALPPYVVALAWIalfgpngLLNTLLRAL 128

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 489966319  85 AI-------GTTAAIVPLSVAAIPFMGRLTETALREVDRGVIEAAQSMGASPFQIITKVLIPEALPSIAAGVTIT 152
Cdd:COG1178  129 FGleppdiyGLGGIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLV 203
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 100-154 2.95e-07

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 49.76  E-value: 2.95e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 489966319 100 IPFMGRLTETALREVDRGVIEAAQSMGASPFQIITKVLIPEALPSIAAGVTITTI 154
Cdd:COG1176  166 LPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFI 220
ssuC PRK11365
aliphatic sulfonate ABC transporter permease SsuC;
53-162 1.48e-06

aliphatic sulfonate ABC transporter permease SsuC;


Pssm-ID: 183100  Cd Length: 263  Bit Score: 47.62  E-value: 1.48e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489966319  53 KILGTIVNIFRSVPFvillIVLIPFTRLLVGkaIGTTAAIVPLSVAAIPFMGRLTETALREVDRGVIEAAQSMGASPFQI 132
Cdd:PRK11365  95 RLLDTSIQMLRNVPH----LALIPLVILWFG--IDESAKIFLVALGTLFPIYINTWHGIRNIDRGLVEMARSYGLSGIPL 168

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 489966319 133 ITKVLIPEALPSIAAGV---------------TITTINLVGYSAM 162
Cdd:PRK11365 169 FIHVILPGALPSIMVGVrfalglmwltlivaeTISANSGIGYLAM 213
PRK10160 PRK10160
taurine ABC transporter permease TauC;
19-151 3.05e-05

taurine ABC transporter permease TauC;


Pssm-ID: 182276  Cd Length: 275  Bit Score: 43.62  E-value: 3.05e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489966319  19 VVVSTLIATIFGVPLGVLLMVtdkdqilhNEPLNKILGTIVNIFRSVP-FVILLIVLIPFtrllvgkAIGTTAAIVPLSV 97
Cdd:PRK10160  87 IVLALLAAVVIGIPVGIAMGL--------SPTVRGILDPLIELYRPVPpLAYLPLMVIWF-------GIGETSKILLIYL 151

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 489966319  98 AAIPFMGRLTETALREVDRGVIEAAQSMGASPFQIITKVLIPEALPSIAAGVTI 151
Cdd:PRK10160 152 AIFAPVAMSALAGVKSAQQVRIRAAQSLGASRAQVLWFVILPGALPEILTGLRI 205
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 15-149 3.77e-05

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 42.92  E-value: 3.77e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489966319  15 TIYMVVVSTLIATIFGVPLGVLLMvtdkdqiLHNEPLNKILGTIVNIFRSVPFVIL-LIVLIPFTRL----LVGKAIGTT 89
Cdd:NF038017   1 SLRVSGTATLIAALIGIPLGALLA-------LRRFPGRRLVISLLNTLMGLPPVVVgLIVYLLLSRSgplgFLGLLYTPT 73

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 489966319  90 AAIVPLSVAAIPFMGRLTETALREVDRGVIEAAQSMGASPFQIITkVLIPEALPSIAAGV 149
Cdd:NF038017  74 AMIIAQAVLALPIVAGLTLAAVQGLDPELRLQILSLGATRWQALW-TLLKEARFALLAAV 132
PRK15100 PRK15100
cystine ABC transporter permease;
7-163 5.34e-05

cystine ABC transporter permease;


Pssm-ID: 185055 [Multi-domain]  Cd Length: 220  Bit Score: 42.81  E-value: 5.34e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489966319   7 LLLVGTWQTiymvVVSTLIATIFGVPLGVLLMVTdkdQILHNEPLNKILGTIVNIFRSVPFVILLIVLIPFTRLLVGKAI 86
Cdd:PRK15100  14 FLLKGAGYT----LQLSIGGMFFGLLLGFILALM---RLSPIWPVRWLARFYVSIFRGTPLIAQLFMIYYGLPQFGIELD 86

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 489966319  87 GTTAAIVPLSVAAIPFMGRLTETALREVDRGVIEAAQSMGASPFQIITKVLIPEALPSIAAGVTITTINLVGYSAMA 163
Cdd:PRK15100  87 PIPAAMIGLSLNTAAYAAETLRAAISSIDKGQWEAAASIGMTRWQTLRRAILPQAARTALPPLSNSFISLVKDTSLA 163
cysT CHL00187
sulfate transport protein; Provisional
 75-152 8.31e-05

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 42.31  E-value: 8.31e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489966319  75 IPFTRLLVGKAIGTtaaivplsvAAIPFMGRLTETALREVDRGVIEAAQSMGASPFQIITKVLIPEALPSIAAGVTIT 152
Cdd:CHL00187 133 IVFTKLGVLLAMIF---------VSFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALT 201
modB PRK09421
molybdate ABC transporter permease subunit;
89-149 1.21e-04

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 41.83  E-value: 1.21e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489966319  89 TAAIVPLSVAAIPFMGRLTETALREVDRGVIEAAQSMGASPFQIITKVLIPEALPSIAAGV 149
Cdd:PRK09421  93 RGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGT 153
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
93-158 2.87e-04

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 40.89  E-value: 2.87e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 489966319  93 VPLSVAAIPFMGRLTETALREVDRGVIEAAQSMGASPFQIITKVLIPEALPSIAAGVTITTINLVG 158
Cdd:PRK10971 145 VAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLG 210
HEQRo_perm_3TM TIGR01726
amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; This ...
 7-74 4.27e-04

amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; This model represents one of several classes of multiple membrane spanning regions found immediately N-terminal to the domain described by pfam00528, binding-protein-dependent transport systems inner membrane component. The region covered by this model generally is predicted to contain three transmembrane helices. Substrate specificities attributed to members of this family include histidine, arginine, glutamine, glutamate, and (in Agrobacterium) the opines octopine and nopaline. [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 130787 [Multi-domain]  Cd Length: 99  Bit Score: 38.28  E-value: 4.27e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 489966319    7 LLLVGTWQTIYMVVVSTLIATIFGVPLGVLLMVtdkdqilHNEPLNKILGTIVNIFRSVPFVILLIVL 74
Cdd:TIGR01726   4 FLLKGLLLTLLLSVLSILLGLVLGLLLALLRLS-------GNRPLRWIATVYVELFRGTPLLVQLFFI 64
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 111-148 5.69e-04

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 39.97  E-value: 5.69e-04
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 489966319 111 LREVDRGVIEAAQSMGASPFQIITKVLIPEALPSIAAG 148
Cdd:PRK09500 150 LKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVAAG 187
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 89-148 1.56e-03

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 38.52  E-value: 1.56e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 489966319  89 TAAIVPLSVAAIPFMGRLTETALREVDRGVIEAAQSMGASPFQIITKVLIPEALPSIAAG 148
Cdd:PRK09497 151 SAVIIGLVYILLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAG 210
PRK09881 PRK09881
D,D-dipeptide ABC transporter permease;
8-145 4.78e-03

D,D-dipeptide ABC transporter permease;


Pssm-ID: 182131 [Multi-domain]  Cd Length: 296  Bit Score: 37.10  E-value: 4.78e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489966319   8 LLVGTWQTIYMVVVSTLIATIFGVPLGVLLMVTDKDqilhnepLNKILGTIVNIFRSVPFVILLIVLipftrllvGKAIG 87
Cdd:PRK09881  89 VLVGSQQSILAGLVVVAIAGMIGSLLGCLSGVLGGR-------ADAIIMRIMDIMLSIPSLVLTMAL--------AAALG 153

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 489966319  88 TTA--AIVPLSVAAIPFMGRLTE-TALREVDRGVIEAAQSMGASPFQIITKVLIPEALPSI 145
Cdd:PRK09881 154 PSLfnAMLAIAIVRIPFYVRLARgQALVVRQYTYVQAAKTFGASRWHLISWHILRNSLPPL 214
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 8-147 8.76e-03

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 36.23  E-value: 8.76e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489966319   8 LLVGTWQTIYMVVVSTLIATIFGVPLGVLLMVTDKdqilhnePLNKILGTIVNIFRSVPFVILLIVLIpftrLLVGKA-- 85
Cdd:COG0395   72 FGRYLLNSLIVAVVSTVLSLLLSSLAAYALARFRF-------RGRKLLFLLILATLMIPGQVLLIPLY----LLFRQLgl 140

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 489966319  86 IGTTAA-IVPLSVAAIPFMGRLTETALREVDRGVIEAAQSMGASPFQIITKVLIPEALPSIAA 147
Cdd:COG0395  141 LNTYWGlILPYLAFGLPFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALAT 203
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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