|
Name |
Accession |
Description |
Interval |
E-value |
| KdpD |
COG2205 |
K+-sensing histidine kinase KdpD [Signal transduction mechanisms]; |
408-633 |
2.79e-23 |
|
K+-sensing histidine kinase KdpD [Signal transduction mechanisms];
Pssm-ID: 441807 [Multi-domain] Cd Length: 239 Bit Score: 99.60 E-value: 2.79e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 408 EETRLRLLVNEMFETMSRRSRSlvdqQLSVI----DQLERNEE--DPARLDSLFRLDHLAARLRRNSANLLVLAG--AQI 479
Cdd:COG2205 8 ELEELERLKSEFLANVSHELRT----PLTSIlgaaELLLDEEDlsPEERRELLEIIRESAERLLRLIEDLLDLSRleSGK 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 480 TRDHREPVPLSTVISAAVSEVED-----YRRVDIARVPDCAVVGAAAGGVIHLLAELIDNALRYSSPTTPVRVAAAIgSE 554
Cdd:COG2205 84 LSLELEPVDLAELLEEAVEELRPlaeekGIRLELDLPPELPLVYADPELLEQVLANLLDNAIKYSPPGGTITISARR-EG 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489997671 555 GSVLLRISDSGLGMTDADRRMANMRLRAGGEVTPDSARHMGLFVVGRLAGRHGIRVGlrgpVTGEQGTGTTAEVYLPLA 633
Cdd:COG2205 163 DGVRISVSDNGPGIPEEELERIFERFYRGDNSRGEGGTGLGLAIVKRIVEAHGGTIW----VESEPGGGTTFTVTLPLA 237
|
|
| HATPase_c |
smart00387 |
Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases. |
526-633 |
7.44e-15 |
|
Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Pssm-ID: 214643 [Multi-domain] Cd Length: 111 Bit Score: 71.14 E-value: 7.44e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 526 HLLAELIDNALRYSSPTTPVRVAAAIgSEGSVLLRISDSGLGMTDADRRMANMRLRAGGEVTPDSARH-MGLFVVGRLAG 604
Cdd:smart00387 8 QVLSNLLDNAIKYTPEGGRITVTLER-DGDHVEITVEDNGPGIPPEDLEKIFEPFFRTDKRSRKIGGTgLGLSIVKKLVE 86
|
90 100
....*....|....*....|....*....
gi 489997671 605 RHGIRVGlrgpVTGEQGTGTTAEVYLPLA 633
Cdd:smart00387 87 LHGGEIS----VESEPGGGTTFTITLPLE 111
|
|
| HATPase_c |
pfam02518 |
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; This family represents the ... |
526-633 |
5.74e-13 |
|
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.
Pssm-ID: 460579 [Multi-domain] Cd Length: 109 Bit Score: 65.85 E-value: 5.74e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 526 HLLAELIDNALRYSSPTTPVRVaaAIGSEGSVLLRISDSGLGMTDADRRMANMRLrAGGEVTPDSARHMGLFVVGRLAGR 605
Cdd:pfam02518 8 QVLSNLLDNALKHAAKAGEITV--TLSEGGELTLTVEDNGIGIPPEDLPRIFEPF-STADKRGGGGTGLGLSIVRKLVEL 84
|
90 100
....*....|....*....|....*...
gi 489997671 606 HGIRVGlrgpVTGEQGTGTTAEVYLPLA 633
Cdd:pfam02518 85 LGGTIT----VESEPGGGTTVTLTLPLA 108
|
|
| COG4251 |
COG4251 |
Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal ... |
171-633 |
1.16e-07 |
|
Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms];
Pssm-ID: 443393 [Multi-domain] Cd Length: 503 Bit Score: 55.18 E-value: 1.16e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 171 LLLTAQNVIDASVRVDSEQIRTQVQGLSRAVGARGQMTMQEILVTRGADLAEPQLRSAMVTLAGTEPSTLFGMSAALGAG 250
Cdd:COG4251 16 LLLLLLLLLLLVLLLALALLLLLALLVLLLLLIRLLLLLLLSLLALLLLLLLLLLLLLVLAALALLLLLLLLELALVLLA 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 251 SPDTKNLQQQMVTRMAIMSDPAVALVNNPELLHSIQITRDIAEQVITDTTEAVTKSVQSQATDRRDAAIRDAVLVLAAIA 330
Cdd:COG4251 96 LLLVLLLLLALLLLLALLLLLELLLLLLALLLLLLLLALLLLEELALLRLALALLLLLLLLLLLLLLLLALILALLLAAL 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 331 TAIVVVLVVARTLVGPMRVLRDGALKVAHTDLDGEIAAVRAGDEPIPEPLAVYTTEEIGQVAHAVDELHTRALLLAGEET 410
Cdd:COG4251 176 AELELLLLLLLVLLLLLLLLLLLLLLLLRLLLELLLLLEAELLLSLGGGLGLLLLLLLLLVLLLLLILLLLLLILVLELL 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 411 RLRLLVNEMFETMSRRSRSLVD--QQL-------------------SVIDQLERNEEDpaRLDSlfRLDHLAARLRRNSA 469
Cdd:COG4251 256 ELRLELEELEEELEERTAELERsnEELeqfayvashdlreplrkisGFSQLLEEDYGD--KLDE--EGREYLERIRDAAE 331
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 470 -------NLLVLAGAQITRDHREPVPLSTVISAAVSEVE---DYRRVDIaRVPDCAVVGAAAGGVIHLLAELIDNALRYS 539
Cdd:COG4251 332 rmqalidDLLAYSRVGRQELEFEPVDLNELLEEVLEDLEpriEERGAEI-EVGPLPTVRGDPTLLRQVFQNLISNAIKYS 410
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 540 SPTTPVRVA-AAIGSEGSVLLRISDSGLG--MTDADR------RMANMRLRAG-GevtpdsarhMGLFVVGRLAGRHGIR 609
Cdd:COG4251 411 RPGEPPRIEiGAEREGGEWVFSVRDNGIGidPEYAEKifeifqRLHSRDEYEGtG---------IGLAIVKKIVERHGGR 481
|
490 500
....*....|....*....|....
gi 489997671 610 VGlrgpVTGEQGTGTTAEVYLPLA 633
Cdd:COG4251 482 IW----VESEPGEGATFYFTLPKA 501
|
|
| HATPase_BasS-like |
cd16940 |
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ... |
527-630 |
7.09e-07 |
|
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli BasS; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) similar to Escherichia coli BasS HK of the BasS-BasR two-component regulatory system (TCS). Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA); some contain a HAMP sensory domain, while some an N-terminal two-component sensor kinase domain.
Pssm-ID: 340417 [Multi-domain] Cd Length: 113 Bit Score: 48.56 E-value: 7.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 527 LLAELIDNALRYSSPTTpvRVAAAIGSEGSVLLRISDSGLGMTDADRRMANMRL-RAGGEVTPDSArhMGLFVVGRLAGR 605
Cdd:cd16940 17 LLRNLVDNAVRYSPQGS--RVEIKLSADDGAVIRVEDNGPGIDEEELEALFERFyRSDGQNYGGSG--LGLSIVKRIVEL 92
|
90 100
....*....|....*....|....*
gi 489997671 606 HGIRVGLrGPVtgeQGTGTTAEVYL 630
Cdd:cd16940 93 HGGQIFL-GNA---QGGGLEAWVRL 113
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| KdpD |
COG2205 |
K+-sensing histidine kinase KdpD [Signal transduction mechanisms]; |
408-633 |
2.79e-23 |
|
K+-sensing histidine kinase KdpD [Signal transduction mechanisms];
Pssm-ID: 441807 [Multi-domain] Cd Length: 239 Bit Score: 99.60 E-value: 2.79e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 408 EETRLRLLVNEMFETMSRRSRSlvdqQLSVI----DQLERNEE--DPARLDSLFRLDHLAARLRRNSANLLVLAG--AQI 479
Cdd:COG2205 8 ELEELERLKSEFLANVSHELRT----PLTSIlgaaELLLDEEDlsPEERRELLEIIRESAERLLRLIEDLLDLSRleSGK 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 480 TRDHREPVPLSTVISAAVSEVED-----YRRVDIARVPDCAVVGAAAGGVIHLLAELIDNALRYSSPTTPVRVAAAIgSE 554
Cdd:COG2205 84 LSLELEPVDLAELLEEAVEELRPlaeekGIRLELDLPPELPLVYADPELLEQVLANLLDNAIKYSPPGGTITISARR-EG 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 489997671 555 GSVLLRISDSGLGMTDADRRMANMRLRAGGEVTPDSARHMGLFVVGRLAGRHGIRVGlrgpVTGEQGTGTTAEVYLPLA 633
Cdd:COG2205 163 DGVRISVSDNGPGIPEEELERIFERFYRGDNSRGEGGTGLGLAIVKRIVEAHGGTIW----VESEPGGGTTFTVTLPLA 237
|
|
| BaeS |
COG0642 |
Signal transduction histidine kinase [Signal transduction mechanisms]; |
317-633 |
9.79e-17 |
|
Signal transduction histidine kinase [Signal transduction mechanisms];
Pssm-ID: 440407 [Multi-domain] Cd Length: 328 Bit Score: 82.26 E-value: 9.79e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 317 AAIRDAVLVLAAIATAIVVVLVVARTLVGPMRVLRDGALKVAHTDLDGEIAAVRAGDEPIPEPLAVYTTEEIGQVAHAVD 396
Cdd:COG0642 1 LLLLLLLLVLLLLLLLLLLLALLLLLLLLLLLALLLLLALLLLLLLLLLLLLLLALALLALLLLLLLLLLLLLLLLLLLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 397 ELHTRALLLAGEETRLRLLVNEMFETMSRRSRSLVD------QQLSVID---QLERNEEDPARLDSLFRLDHLAARLRRN 467
Cdd:COG0642 81 LLLLLLLLLLLLLLLLLALLLLLEEANEAKSRFLANvshelrTPLTAIRgylELLLEELDEEQREYLETILRSADRLLRL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 468 SANLLVLA--GAQITRDHREPVPLSTVISAAVSEVEDY---RRVDIA-RVPDCAVVGAAAGGVIH-LLAELIDNALRYSS 540
Cdd:COG0642 161 INDLLDLSrlEAGKLELEPEPVDLAELLEEVVELFRPLaeeKGIELElDLPDDLPTVRGDPDRLRqVLLNLLSNAIKYTP 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 541 PTTPVRVAAAIgSEGSVLLRISDSGLGMTDADRRMANMRLRAGGEVTPDSARHMGLFVVGRLAGRHGIRVGlrgpVTGEQ 620
Cdd:COG0642 241 EGGTVTVSVRR-EGDRVRISVEDTGPGIPPEDLERIFEPFFRTDPSRRGGGTGLGLAIVKRIVELHGGTIE----VESEP 315
|
330
....*....|...
gi 489997671 621 GTGTTAEVYLPLA 633
Cdd:COG0642 316 GKGTTFTVTLPLA 328
|
|
| HATPase_c |
smart00387 |
Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases. |
526-633 |
7.44e-15 |
|
Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Pssm-ID: 214643 [Multi-domain] Cd Length: 111 Bit Score: 71.14 E-value: 7.44e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 526 HLLAELIDNALRYSSPTTPVRVAAAIgSEGSVLLRISDSGLGMTDADRRMANMRLRAGGEVTPDSARH-MGLFVVGRLAG 604
Cdd:smart00387 8 QVLSNLLDNAIKYTPEGGRITVTLER-DGDHVEITVEDNGPGIPPEDLEKIFEPFFRTDKRSRKIGGTgLGLSIVKKLVE 86
|
90 100
....*....|....*....|....*....
gi 489997671 605 RHGIRVGlrgpVTGEQGTGTTAEVYLPLA 633
Cdd:smart00387 87 LHGGEIS----VESEPGGGTTFTITLPLE 111
|
|
| HATPase_c |
pfam02518 |
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; This family represents the ... |
526-633 |
5.74e-13 |
|
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.
Pssm-ID: 460579 [Multi-domain] Cd Length: 109 Bit Score: 65.85 E-value: 5.74e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 526 HLLAELIDNALRYSSPTTPVRVaaAIGSEGSVLLRISDSGLGMTDADRRMANMRLrAGGEVTPDSARHMGLFVVGRLAGR 605
Cdd:pfam02518 8 QVLSNLLDNALKHAAKAGEITV--TLSEGGELTLTVEDNGIGIPPEDLPRIFEPF-STADKRGGGGTGLGLSIVRKLVEL 84
|
90 100
....*....|....*....|....*...
gi 489997671 606 HGIRVGlrgpVTGEQGTGTTAEVYLPLA 633
Cdd:pfam02518 85 LGGTIT----VESEPGGGTTVTLTLPLA 108
|
|
| WalK |
COG5002 |
Sensor histidine kinase WalK [Signal transduction mechanisms]; |
257-633 |
9.59e-09 |
|
Sensor histidine kinase WalK [Signal transduction mechanisms];
Pssm-ID: 444026 [Multi-domain] Cd Length: 390 Bit Score: 58.41 E-value: 9.59e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 257 LQQQMVTRMAIMSDPAVALVNNPELLHSIQITRDIAEQVITDTTEAVTKSVQSQATDRRDAAIRDAVLVLAAIATAIVVV 336
Cdd:COG5002 15 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLALLLLLLLLLLLLLALLLLLLLLLLLLALALLLLALLLLLLL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 337 LVVARTLVGPMRVLRDGALKVAHTDLDGEIAAVRAGDEPIPEPLAVYTTEEIGQVAHAVDELHTRALllagEETRLRLLV 416
Cdd:COG5002 95 LLLLLALLILLLLLALLILLAALLLLLSELLLLLLLLGRLSLRLSALLLGLLLLAAVERDITELERL----EQMRREFVA 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 417 N------------EMF-ETMSRRSRSLVDQQLSVIDQLERNeedparldslfrldhlAARLRRNSANLLVLA--GAQITR 481
Cdd:COG5002 171 NvshelrtpltsiRGYlELLLDGAADDPEERREYLEIILEE----------------AERLSRLVNDLLDLSrlESGELK 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 482 DHREPVPLSTVISAAVSEVEDY---RRVDI-ARVPDCAVVGAAAGGVIH-LLAELIDNALRYSSPTTPVRVAAAIgSEGS 556
Cdd:COG5002 235 LEKEPVDLAELLEEVVEELRPLaeeKGIELeLDLPEDPLLVLGDPDRLEqVLTNLLDNAIKYTPEGGTITVSLRE-EDDQ 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 557 VLLRISDSGLGMTDADRRmanmRL-----RAggevtpDSARH-------MGLFVVGRLAGRHGIRVGlrgpVTGEQGTGT 624
Cdd:COG5002 314 VRISVRDTGIGIPEEDLP----RIferfyRV------DKSRSretggtgLGLAIVKHIVEAHGGRIW----VESEPGKGT 379
|
....*....
gi 489997671 625 TAEVYLPLA 633
Cdd:COG5002 380 TFTITLPLA 388
|
|
| COG4251 |
COG4251 |
Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal ... |
171-633 |
1.16e-07 |
|
Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms];
Pssm-ID: 443393 [Multi-domain] Cd Length: 503 Bit Score: 55.18 E-value: 1.16e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 171 LLLTAQNVIDASVRVDSEQIRTQVQGLSRAVGARGQMTMQEILVTRGADLAEPQLRSAMVTLAGTEPSTLFGMSAALGAG 250
Cdd:COG4251 16 LLLLLLLLLLLVLLLALALLLLLALLVLLLLLIRLLLLLLLSLLALLLLLLLLLLLLLVLAALALLLLLLLLELALVLLA 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 251 SPDTKNLQQQMVTRMAIMSDPAVALVNNPELLHSIQITRDIAEQVITDTTEAVTKSVQSQATDRRDAAIRDAVLVLAAIA 330
Cdd:COG4251 96 LLLVLLLLLALLLLLALLLLLELLLLLLALLLLLLLLALLLLEELALLRLALALLLLLLLLLLLLLLLLALILALLLAAL 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 331 TAIVVVLVVARTLVGPMRVLRDGALKVAHTDLDGEIAAVRAGDEPIPEPLAVYTTEEIGQVAHAVDELHTRALLLAGEET 410
Cdd:COG4251 176 AELELLLLLLLVLLLLLLLLLLLLLLLLRLLLELLLLLEAELLLSLGGGLGLLLLLLLLLVLLLLLILLLLLLILVLELL 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 411 RLRLLVNEMFETMSRRSRSLVD--QQL-------------------SVIDQLERNEEDpaRLDSlfRLDHLAARLRRNSA 469
Cdd:COG4251 256 ELRLELEELEEELEERTAELERsnEELeqfayvashdlreplrkisGFSQLLEEDYGD--KLDE--EGREYLERIRDAAE 331
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 470 -------NLLVLAGAQITRDHREPVPLSTVISAAVSEVE---DYRRVDIaRVPDCAVVGAAAGGVIHLLAELIDNALRYS 539
Cdd:COG4251 332 rmqalidDLLAYSRVGRQELEFEPVDLNELLEEVLEDLEpriEERGAEI-EVGPLPTVRGDPTLLRQVFQNLISNAIKYS 410
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 540 SPTTPVRVA-AAIGSEGSVLLRISDSGLG--MTDADR------RMANMRLRAG-GevtpdsarhMGLFVVGRLAGRHGIR 609
Cdd:COG4251 411 RPGEPPRIEiGAEREGGEWVFSVRDNGIGidPEYAEKifeifqRLHSRDEYEGtG---------IGLAIVKKIVERHGGR 481
|
490 500
....*....|....*....|....
gi 489997671 610 VGlrgpVTGEQGTGTTAEVYLPLA 633
Cdd:COG4251 482 IW----VESEPGEGATFYFTLPKA 501
|
|
| HATPase_BasS-like |
cd16940 |
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ... |
527-630 |
7.09e-07 |
|
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli BasS; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) similar to Escherichia coli BasS HK of the BasS-BasR two-component regulatory system (TCS). Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA); some contain a HAMP sensory domain, while some an N-terminal two-component sensor kinase domain.
Pssm-ID: 340417 [Multi-domain] Cd Length: 113 Bit Score: 48.56 E-value: 7.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 527 LLAELIDNALRYSSPTTpvRVAAAIGSEGSVLLRISDSGLGMTDADRRMANMRL-RAGGEVTPDSArhMGLFVVGRLAGR 605
Cdd:cd16940 17 LLRNLVDNAVRYSPQGS--RVEIKLSADDGAVIRVEDNGPGIDEEELEALFERFyRSDGQNYGGSG--LGLSIVKRIVEL 92
|
90 100
....*....|....*....|....*
gi 489997671 606 HGIRVGLrGPVtgeQGTGTTAEVYL 630
Cdd:cd16940 93 HGGQIFL-GNA---QGGGLEAWVRL 113
|
|
| CitA |
COG3290 |
Sensor histidine kinase DipB regulating citrate/malate metabolism [Signal transduction ... |
318-633 |
6.78e-06 |
|
Sensor histidine kinase DipB regulating citrate/malate metabolism [Signal transduction mechanisms];
Pssm-ID: 442519 [Multi-domain] Cd Length: 389 Bit Score: 49.46 E-value: 6.78e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 318 AIRDAVLVLAAIATaIVVVLVVARTLVG-----------PMRVLRDGALKVAHTDLDGEIAAVRAgdePIpeplaVYTTE 386
Cdd:COG3290 92 SIREGVIAVDRDGR-ITLINDAARRLLGldaigrpidevLAEVLETGERDEEILLNGRVLVVNRV---PI-----RDDGR 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 387 EIGQVAHAVDelHTRALLLAGEETRLRLLVNEMfetmsrrsRSlvdQ------QLSVID---QLERNEEDPARLDSLFR- 456
Cdd:COG3290 163 VVGAVATFRD--RTELERLEEELEGVKELAEAL--------RA---QrhdfrnHLHTISgllQLGEYDEALEYIDEISEe 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 457 LDHLAARLRRNSANLlVLAGaqitrdhrepvplstVISAAVSEVEDYR-RVDIARVPDCAVVGAAAGGVIHLLAELIDNA 535
Cdd:COG3290 230 LQELIDSLLSRIGNP-VLAA---------------LLLGKAARARERGiDLTIDIDSDLPDLPLSDTDLVTILGNLLDNA 293
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 536 LRY--SSPTTPVRVAAAIGSEGS-VLLRISDSGLGMTDADRRmanmRLRAGGEVTPDSARH-MGLFVVGRLAGRHGIRVG 611
Cdd:COG3290 294 IEAveKLPEEERRVELSIRDDGDeLVIEVEDSGPGIPEELLE----KIFERGFSTKLGEGRgLGLALVKQIVEKYGGTIE 369
|
330 340
....*....|....*....|..
gi 489997671 612 lrgpVTGEQGTGTTAEVYLPLA 633
Cdd:COG3290 370 ----VESEEGEGTVFTVRLPKE 387
|
|
| YesM |
COG2972 |
Sensor histidine kinase YesM [Signal transduction mechanisms]; |
323-632 |
1.04e-05 |
|
Sensor histidine kinase YesM [Signal transduction mechanisms];
Pssm-ID: 442211 [Multi-domain] Cd Length: 445 Bit Score: 48.86 E-value: 1.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 323 VLVLAAIATAIVVVLVVARTLVGPMRVLRDGALKVAHTDLdgeiaavragdepipEPLAVYTTEEIGQVAHAVDELHTRA 402
Cdd:COG2972 161 LIILLLLLLALLLSYLLSRSITRPIKRLKKAMKKVEKGDL---------------VRLEVSGNDEIGILARSFNEMVERI 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 403 LLLAGEETRLRLLVNEMfetmsrRSRSLvDQQ---------LSVIDQLERnEEDPARLDSLfrLDHLAARLRRNsanllv 473
Cdd:COG2972 226 KELIEEVYELELEKKEA------ELKAL-QAQinphflfntLNSIRWLAE-LEDPEEAEEM--LEALSKLLRYS------ 289
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 474 lagaqiTRDHREPVPLSTVISAAVS--EVEDYR-------RVDI------ARVPdcavvgaaaggvIHLLAELIDNALRY 538
Cdd:COG2972 290 ------LSKGDELVTLEEELELIKSylEIQKLRfgdrlevEIEIdeelldLLIP------------KLILQPLVENAIEH 351
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 539 S-SPTTP---VRVAAAIgSEGSVLLRISDSGLGMTDADRRmanmRLRAGGEVTPDSaRHMGLF-VVGRLAGRHGIRVGLR 613
Cdd:COG2972 352 GiEPKEGggtIRISIRK-EGDRLVITVEDNGVGMPEEKLE----KLLEELSSKGEG-RGIGLRnVRERLKLYYGEEYGLE 425
|
330
....*....|....*....
gi 489997671 614 gpVTGEQGTGTTAEVYLPL 632
Cdd:COG2972 426 --IESEPGEGTTVTIRIPL 442
|
|
| HAMP |
COG2770 |
HAMP domain [Signal transduction mechanisms]; |
112-628 |
9.19e-05 |
|
HAMP domain [Signal transduction mechanisms];
Pssm-ID: 442051 [Multi-domain] Cd Length: 631 Bit Score: 46.26 E-value: 9.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 112 AQKNFTARKYELQTRLADTDVIADVRSGVNTLLNGGQALLDKVLADSIGLRDRVTAYAPLLLTAQNVIDASVRVDSEQIR 191
Cdd:COG2770 5 LLALLLLLLLLLLLLLLAGALLVLALISLRLLLALLLLLLLLLALLLLLLLLLLLLLAALVLLALLLAAALLLLLLLLSL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 192 TQVQGLSRAVGARGQMTMQEILVTRGADLAEPQLRSAMVTLAGTEPSTLFGMSAALGAGSPDTKNLQQQMVTRMAIMSDP 271
Cdd:COG2770 85 VALAALLLALLLLLLLALLLLLAALLLLLLLAALALLLLLLLLLAALLALLLALALLALLLGLAAARLLLAALLALAAAL 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 272 AVALVNNPELLHSIQITRDIAEQVITDTTEAVTKSVQSQATDRRDAAIRDAVLVLAAIATAIVVVLVVARTLVGPMRVLR 351
Cdd:COG2770 165 ALALGAGELLLLADLAAAIAALLAALLLLLLGGLLLVVLLEAALAALLLLLLLALLALLLALLLALLLARRITRPLRRLA 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 352 DGALKVAHTDLDGEIaavragdepipeplAVYTTEEIGQVAHAVDELhTRALLLAGEETRLRLLVNEMFETMSRRSRSLV 431
Cdd:COG2770 245 EAARRIAAGDLDVRI--------------PVSRKDEIGELARAFNRM-ADSLRESIEEAEEEEELAEAELARLLEALLEL 309
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 432 DQQLSVIDQLERNEEDPARLDSLFRLDHLAARLRRNSANLLVLAGAQITRDHREPVPLSTVISAAVSEVEDYRRVDIARV 511
Cdd:COG2770 310 LLALLLLLLALLLLAAAALLLELLLLLLLALLLLLLLAADLLLALALAALLLLLALELLLEAELLVLLALEALALEAELA 389
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 512 PDCAVVGAAAGGVIHLLAELIDNALRYSSPTTPVRVAAAIGSEGSVLLRISDSGLGMTDADRRMANMRLRAGGEVTPDSA 591
Cdd:COG2770 390 AVLALLAALAAALLLLELALEELVLALLALALLALAAAAAAAEAAAAALELAAAAIAAAAAAEAEGGLAELEAEELVAAA 469
|
490 500 510
....*....|....*....|....*....|....*..
gi 489997671 592 RHMGLFVVGRLAGRHGIRVGLRGPVTGEQGTGTTAEV 628
Cdd:COG2770 470 EALLLLAALLLLAALGALELLLLEEEEEAGAAAEELA 506
|
|
| HATPase_DpiB-CitA-like |
cd16915 |
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ... |
525-631 |
3.11e-04 |
|
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli K-12 DpiB, DcuS, and Bacillus subtilis CitS, DctS, and YufL; This family includes histidine kinase-like ATPase domains of Escherichia coli K-12 DpiB and DcuS, and Bacillus subtilis CitS, DctS and MalK histidine kinases (HKs) all of which are two component transduction systems (TCSs). E. coli K-12 DpiB (also known as CitA) is the histidine kinase (HK) of DpiA-DpiB, a two-component signal transduction system (TCS) required for the expression of citrate-specific fermentation genes and genes involved in plasmid inheritance. E. coli K-12 DcuS (also known as YjdH) is the HK of DcuS-DcuR, a TCS that in the presence of the extracellular C4-dicarboxlates, activates the expression of the genes of anaerobic fumarate respiration and of aerobic C4-dicarboxylate uptake. CitS is the HK of Bacillus subtilis CitS-CitT, a TCS which regulates expression of CitM, the Mg-citrate transporter. Bacillus subtilis DctS forms a tripartite sensor unit (DctS/DctA/DctB) for sensing C4 dicarboxylates. Bacillus subtilis MalK (also known as YfuL) is the HK of MalK-MalR (YufL-YufM) a TCS which regulates the expression of the malate transporters MaeN (YufR) and YflS, and is essential for utilization of malate in minimal medium. Proteins having this DpiB-CitA-like HATPase domain generally have sensor domains such as Cache and PAS, and a histidine kinase A (HisKA)-like SpoOB-type, alpha-helical domain.
Pssm-ID: 340392 [Multi-domain] Cd Length: 104 Bit Score: 40.73 E-value: 3.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 525 IHLLAELIDNALRYSSPTTPV--RVAAAIGSEGS-VLLRISDSGLGMTDADRRMANMRlraGGEVTPDSARHMGLFVVGR 601
Cdd:cd16915 2 ITIVGNLIDNALDALAATGAPnkQVEVFLRDEGDdLVIEVRDTGPGIAPELRDKVFER---GVSTKGQGERGIGLALVRQ 78
|
90 100 110
....*....|....*....|....*....|
gi 489997671 602 LAGRHGIRVglrgPVTGEQGTGTTAEVYLP 631
Cdd:cd16915 79 SVERLGGSI----TVESEPGGGTTFSIRIP 104
|
|
| Tar |
COG0840 |
Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms]; |
141-398 |
9.96e-04 |
|
Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms];
Pssm-ID: 440602 [Multi-domain] Cd Length: 533 Bit Score: 42.70 E-value: 9.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 141 NTLLNGGQALLDKVLADSIGLRDRVTAYAPLLLTAQNVIDASVRVDSEQIRTQVQGLSRAVGARGQMTMQEILVTRGADL 220
Cdd:COG0840 4 LLLLLALLLALLLLALSLLALLAAALLILLALLLAALTALALLLLLSLLALLLLLLLLALALLLVLLALLLLLALVVLLA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 221 AEPQLRSAMVTLAGTEPSTLFGMSAALGAGSPDTKNLQQQMVTRMAIMSDPAVALVNNPELLHSIQITRDIAEQVITDTT 300
Cdd:COG0840 84 LLLALLLLLLALLALALAALALLAALAALLALLELLLAALLAALAIALLALAALLALAALALALLALALLAAAAAAAAAL 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 301 EAVTKSVQSQATDRRDAAIRDAVLVLAAIATAIVVVLVVARTLVGPMRVLRDGALKVAHTDLDGEIAAVRAGdepipepl 380
Cdd:COG0840 164 AALLEAAALALAAAALALALLAAALLALVALAIILALLLSRSITRPLRELLEVLERIAEGDLTVRIDVDSKD-------- 235
|
250
....*....|....*...
gi 489997671 381 avytteEIGQVAHAVDEL 398
Cdd:COG0840 236 ------EIGQLADAFNRM 247
|
|
| COG3920 |
COG3920 |
Two-component sensor histidine kinase, HisKA and HATPase domains [Signal transduction ... |
126-636 |
3.06e-03 |
|
Two-component sensor histidine kinase, HisKA and HATPase domains [Signal transduction mechanisms];
Pssm-ID: 443125 [Multi-domain] Cd Length: 495 Bit Score: 41.04 E-value: 3.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 126 RLADTDVIADVRSGVNTLLNGGQALLDKVLADSIGLRDRVTAYAPLLLTAQNVIDASVRVDSEQIRTQVQGLSRAVGARG 205
Cdd:COG3920 19 LAALLLLAAALLLALLALLLLALLLLALLLASALLALLALSAAALAAALAVALAAAVGAAAALLALLVLLLLLLLAAAAL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 206 QMTMQEILVTRGADLAEPQLRSAMVTLAGTEPSTLFGMSAALGAGSPDTKNLQQQMVTRMAIMSDPAVALVNNPELLHSI 285
Cdd:COG3920 99 ALALLLAALAGLLLLAALLLLRLVALLAALALLALLLLLLLLLAILALAELAVALAELAAALLLLAEELAALRLAAAALL 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 286 QITRDIAEQVITDTTEAVTKSVQSQATDRRDAAIRDAVLVLAAIATAIVVVLVVARTLVGPMRVLRDGALKVAHTDLDGE 365
Cdd:COG3920 179 LLLAALLDLGLALAALAAAALLALLLALELLLALLLLLLLLLALLLVLLAALLRLRAAVLEELERRRRARGLGRLLLLLL 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 366 IAAVRAGDEPIpeplavytteEIGQVAHAVDELHTRALLLAGEETRLRLLVNEmfetMSRRSR-------SLVDQQLsvi 438
Cdd:COG3920 259 LLLLLLRALLL----------LAAGIRLVITERKRAEEELEASLEEKELLLRE----LHHRVKnnlqvvsSLLRLQA--- 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 439 dqleRNEEDPARLDSlfrLDHLAARLRrnsanllVLAGAQ---ITRDHREPVPLSTVISAAVSEVED-YRRVDIARVPDC 514
Cdd:COG3920 322 ----RRADDPEAREA---LEESQNRIQ-------ALALVHellYQSEDWEGVDLRDYLRELLEPLRDsYGGRGIRIELDG 387
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 489997671 515 AVVGAAAGGVIHL---LAELIDNALRYSSPTTP---VRVAAAIgSEGSVLLRISDSGLGMTDadrrmanmrlraggEVTP 588
Cdd:COG3920 388 PDVELPADAAVPLgliLNELVTNALKHAFLSGEggrIRVSWRR-EDGRLRLTVSDNGVGLPE--------------DVDP 452
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 489997671 589 DSARHMGLFVVGRLAGRhgirvgLRGPVTGEQGTGTTAEVYLPLAVLE 636
Cdd:COG3920 453 PARKGLGLRLIRALVRQ------LGGTLELDRPEGTRVRITFPLAELA 494
|
|
|