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Conserved domains on  [gi|490205572|ref|WP_004104002|]
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MULTISPECIES: class I ribonucleotide reductase maintenance protein YfaE [Klebsiella]

Protein Classification

ferredoxin-like diferric-tyrosyl radical cofactor maintenance protein YfaE( domain architecture ID 10793447)

ferredoxin-like diferric-tyrosyl radical cofactor maintenance protein YfaE is a 2Fe-2S ferredoxin involved in cofactor maintenance and assembly

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10713 PRK10713
2Fe-2S ferredoxin-like protein;
1-84 2.77e-55

2Fe-2S ferredoxin-like protein;


:

Pssm-ID: 182668 [Multi-domain]  Cd Length: 84  Bit Score: 165.29  E-value: 2.77e-55
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490205572  1 MKRIFLKISDTRLECQDEHPSLLAALESHNIDVEYQCREGYCGSCRLRLVSGQVDWLTEPLAFVQPGEILPCCCRAKGDI 80
Cdd:PRK10713  1 MARVTLRITGTQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEPLAFIQPGEILPCCCRAKGDI 80


                ....
gi 490205572 81 EIEM 84
Cdd:PRK10713 81 EIEM 84
 
Name Accession Description Interval E-value
PRK10713 PRK10713
2Fe-2S ferredoxin-like protein;
1-84 2.77e-55

2Fe-2S ferredoxin-like protein;


Pssm-ID: 182668 [Multi-domain]  Cd Length: 84  Bit Score: 165.29  E-value: 2.77e-55
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490205572  1 MKRIFLKISDTRLECQDEHPSLLAALESHNIDVEYQCREGYCGSCRLRLVSGQVDWLTEPLAFVQPGEILPCCCRAKGDI 80
Cdd:PRK10713  1 MARVTLRITGTQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEPLAFIQPGEILPCCCRAKGDI 80


                ....
gi 490205572 81 EIEM 84
Cdd:PRK10713 81 EIEM 84
Fdx COG0633
Ferredoxin [Energy production and conversion];
1-84 4.14e-17

Ferredoxin [Energy production and conversion];


Pssm-ID: 440398 [Multi-domain]  Cd Length: 87  Bit Score: 68.72  E-value: 4.14e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490205572  1 MKRIFLKISDTRLECqDEHPSLLAALESHNIDVEYQCREGYCGSCRLRLVSGQVD-----WLTEPLafVQPGEILPCCCR 75
Cdd:COG0633   1 MPKVTFIPEGHTVEV-PAGESLLEAALRAGIDLPYSCRSGACGTCHVRVLEGEVDhreedALSDEE--RAAGSRLACQAR 77


                ....*....
gi 490205572 76 AKGDIEIEM 84
Cdd:COG0633  78 PTSDLVVEL 86
fer2 cd00207
2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in ...
 3-83 1.17e-14

2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.


Pssm-ID: 238126 [Multi-domain]  Cd Length: 84  Bit Score: 62.41  E-value: 1.17e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490205572  3 RIFLKISDTRLECqDEHPSLLAALESHNIDVEYQCREGYCGSCRLRLVSGQVDWLTEPLAF---VQPGEILPCCCRAKGD 79
Cdd:cd00207   2 TINVPGSGVEVEV-PEGETLLDAAREAGIDIPYSCRAGACGTCKVEVVEGEVDQSDPSLLDeeeAEGGYVLACQTRVTDG 80


                ....
gi 490205572 80 IEIE 83
Cdd:cd00207  81 LVIE 84
Fer2 pfam00111
2Fe-2S iron-sulfur cluster binding domain;
4-77 2.27e-10

2Fe-2S iron-sulfur cluster binding domain;


Pssm-ID: 395061 [Multi-domain]  Cd Length: 77  Bit Score: 51.37  E-value: 2.27e-10
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 490205572   4 IFLKISDTRLECQDEHPSLLAALESHNIDVEYQCREGYCGSCRLRLVSGQVD---WLTEPLAFVQPGEILPCCCRAK 77
Cdd:pfam00111  1 VTINGKGVTIEVPDGETTLLDAAEEAGIDIPYSCRGGGCGTCAVKVLEGEDQsdqSFLEDDELAAGYVVLACQTYPK 77
 
Name Accession Description Interval E-value
PRK10713 PRK10713
2Fe-2S ferredoxin-like protein;
1-84 2.77e-55

2Fe-2S ferredoxin-like protein;


Pssm-ID: 182668 [Multi-domain]  Cd Length: 84  Bit Score: 165.29  E-value: 2.77e-55
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490205572  1 MKRIFLKISDTRLECQDEHPSLLAALESHNIDVEYQCREGYCGSCRLRLVSGQVDWLTEPLAFVQPGEILPCCCRAKGDI 80
Cdd:PRK10713  1 MARVTLRITGTQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEPLAFIQPGEILPCCCRAKGDI 80


                ....
gi 490205572 81 EIEM 84
Cdd:PRK10713 81 EIEM 84
Fdx COG0633
Ferredoxin [Energy production and conversion];
1-84 4.14e-17

Ferredoxin [Energy production and conversion];


Pssm-ID: 440398 [Multi-domain]  Cd Length: 87  Bit Score: 68.72  E-value: 4.14e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490205572  1 MKRIFLKISDTRLECqDEHPSLLAALESHNIDVEYQCREGYCGSCRLRLVSGQVD-----WLTEPLafVQPGEILPCCCR 75
Cdd:COG0633   1 MPKVTFIPEGHTVEV-PAGESLLEAALRAGIDLPYSCRSGACGTCHVRVLEGEVDhreedALSDEE--RAAGSRLACQAR 77


                ....*....
gi 490205572 76 AKGDIEIEM 84
Cdd:COG0633  78 PTSDLVVEL 86
fer2 cd00207
2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in ...
 3-83 1.17e-14

2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.


Pssm-ID: 238126 [Multi-domain]  Cd Length: 84  Bit Score: 62.41  E-value: 1.17e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490205572  3 RIFLKISDTRLECqDEHPSLLAALESHNIDVEYQCREGYCGSCRLRLVSGQVDWLTEPLAF---VQPGEILPCCCRAKGD 79
Cdd:cd00207   2 TINVPGSGVEVEV-PEGETLLDAAREAGIDIPYSCRAGACGTCKVEVVEGEVDQSDPSLLDeeeAEGGYVLACQTRVTDG 80


                ....
gi 490205572 80 IEIE 83
Cdd:cd00207  81 LVIE 84
PRK07609 PRK07609
CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
 3-83 5.46e-13

CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated


Pssm-ID: 181058 [Multi-domain]  Cd Length: 339  Bit Score: 61.81  E-value: 5.46e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490205572   3 RIFLKISDTRLECQDEHPSLLAALeSHNIDVEYQCREGYCGSCRLRLVSGQVD-------WLTEplAFVQPGEILPCCCR 75
Cdd:PRK07609   4 QVTLQPSGRQFTAEPDETILDAAL-RQGIHLPYGCKNGACGSCKGRLLEGEVEqgphqasALSG--EERAAGEALTCCAK 80


                 ....*...
gi 490205572  76 AKGDIEIE 83
Cdd:PRK07609  81 PLSDLVLE 88
PRK10684 PRK10684
HCP oxidoreductase, NADH-dependent; Provisional
 21-83 6.74e-12

HCP oxidoreductase, NADH-dependent; Provisional


Pssm-ID: 236735 [Multi-domain]  Cd Length: 332  Bit Score: 58.95  E-value: 6.74e-12
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 490205572  21 SLLAALESHNIDVEYQCREGYCGSCRLRLVSGQVDW-----LTEplAFVQPGEILPCCCRAKGDIEIE 83
Cdd:PRK10684 267 TLLEALESNKVPVVAACRAGVCGCCKTKVVSGEYTVsstmtLTP--AEIAQGYVLACSCHPQGDLVLA 332
Fer2 pfam00111
2Fe-2S iron-sulfur cluster binding domain;
4-77 2.27e-10

2Fe-2S iron-sulfur cluster binding domain;


Pssm-ID: 395061 [Multi-domain]  Cd Length: 77  Bit Score: 51.37  E-value: 2.27e-10
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 490205572   4 IFLKISDTRLECQDEHPSLLAALESHNIDVEYQCREGYCGSCRLRLVSGQVD---WLTEPLAFVQPGEILPCCCRAK 77
Cdd:pfam00111  1 VTINGKGVTIEVPDGETTLLDAAEEAGIDIPYSCRGGGCGTCAVKVLEGEDQsdqSFLEDDELAAGYVVLACQTYPK 77
PTZ00038 PTZ00038
ferredoxin; Provisional
 10-83 3.55e-09

ferredoxin; Provisional


Pssm-ID: 240237 [Multi-domain]  Cd Length: 191  Bit Score: 50.61  E-value: 3.55e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 490205572  10 DTRLECqDEHPSLLAALESHNIDVEYQCREGYCGSCRLRLVSGQVD-----WLTEplAFVQPGEILPCCCRAKGDIEIE 83
Cdd:PTZ00038 106 EKVIEC-DEDEYILDAAERQGVELPYSCRGGSCSTCAAKLLEGEVDnedqsYLDD--EQLKKGYCLLCTCYPKSDCTIE 181
PLN03136 PLN03136
Ferredoxin; Provisional
 10-83 8.59e-07

Ferredoxin; Provisional


Pssm-ID: 178681 [Multi-domain]  Cd Length: 148  Bit Score: 43.58  E-value: 8.59e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 490205572  10 DTRLECqDEHPSLLAALESHNIDVEYQCREGYCGSCRLRLVSGQVDWLTEPL---AFVQPGEILPCCCRAKGDIEIE 83
Cdd:PLN03136  65 EQEVEC-EEDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFlddEQISEGYVLTCVAYPTSDVVIE 140
petF CHL00134
ferredoxin; Validated
 10-82 3.39e-06

ferredoxin; Validated


Pssm-ID: 177056 [Multi-domain]  Cd Length: 99  Bit Score: 41.24  E-value: 3.39e-06
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 490205572 10 DTRLECQDEHPSLLAAlESHNIDVEYQCREGYCGSCRLRLVSGQVD-----WLTEPLafVQPGEILPCCCRAKGDIEI 82
Cdd:CHL00134 16 DVTIDCPDDVYILDAA-EEQGIDLPYSCRAGACSTCAGKVTEGTVDqsdqsFLDDDQ--LEAGFVLTCVAYPTSDCTI 90
PRK05713 PRK05713
iron-sulfur-binding ferredoxin reductase;
22-83 3.46e-06

iron-sulfur-binding ferredoxin reductase;


Pssm-ID: 235575 [Multi-domain]  Cd Length: 312  Bit Score: 42.79  E-value: 3.46e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 490205572  22 LLAALESHNIDVEYQCREGYCGSCRLRLVSGQV-DWLTEPLAFVQ--PGEILPCCCRAKGDIEIE 83
Cdd:PRK05713  19 LLDALNAAGVAVPYSCRAGSCHACLVRCLQGEPeDALPEALAAEKreQGWRLACQCRVVGDLRVE 83
antC PRK11872
anthranilate 1,2-dioxygenase electron transfer component AntC;
22-79 5.97e-03

anthranilate 1,2-dioxygenase electron transfer component AntC;


Pssm-ID: 183350 [Multi-domain]  Cd Length: 340  Bit Score: 33.56  E-value: 5.97e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 490205572  22 LLAALESHNIDVEYQCREGYCGSCRLRLVSGQ-----VDWLTEPLAFVQPGEILPCCCRAKGD 79
Cdd:PRK11872  25 LLDAALRNGINLPLDCREGVCGTCQGRCESGIysqdyVDEDALSERDLAQRKMLACQTRVKSD 87
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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