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Conserved domains on  [gi|490226726|ref|WP_004125078|]
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InlB B-repeat-containing protein [Gardnerella vaginalis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Flg_new pfam09479
Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core ...
 707-748 4.87e-08

Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core region of about 43 residues which occurs in more than 400 mostly secreted or cell surface-located proteins from over 300 eubacterial and few archaeal species. These proteins contain between one and 34 copies of the domain that often occur in tandem arrays with up to more than 20 copies.


:

Pssm-ID: 462813 [Multi-domain]  Cd Length: 65  Bit Score: 50.32  E-value: 4.87e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 490226726  707 SMPDNPTKAGFTFNGWYQGENGTGDAFTGDTVVANSDMTVYA 748
Cdd:pfam09479  23 TLPADPTKEGYTFAGWYTDSDGTTKYTFGTDVTPTGDITLYA 64
PRK10819 super family cl35954
transport protein TonB; Provisional
 784-875 8.38e-06

transport protein TonB; Provisional


The actual alignment was detected with superfamily member PRK10819:

Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 48.14  E-value: 8.38e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490226726 784 LEPESKPTPEktPEPDVMPEPEPIPVPDVPDVPYVPDDSWIPVPE-------NPEYSVVEQPVLDSvhsldKPVEYSVEQ 856
Cdd:PRK10819  58 LEPPQAVQPP--PEPVVEPEPEPEPIPEPPKEAPVVIPKPEPKPKpkpkpkpKPVKKVEEQPKREV-----KPVEPRPAS 130

                         90
                 ....*....|....*....
gi 490226726 857 RFKAVDAGESYNVKAPAKH 875
Cdd:PRK10819 131 PFENTAPARPTSSTATAAA 149
 
Name Accession Description Interval E-value
Flg_new pfam09479
Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core ...
 707-748 4.87e-08

Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core region of about 43 residues which occurs in more than 400 mostly secreted or cell surface-located proteins from over 300 eubacterial and few archaeal species. These proteins contain between one and 34 copies of the domain that often occur in tandem arrays with up to more than 20 copies.


Pssm-ID: 462813 [Multi-domain]  Cd Length: 65  Bit Score: 50.32  E-value: 4.87e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 490226726  707 SMPDNPTKAGFTFNGWYQGENGTGDAFTGDTVVANSDMTVYA 748
Cdd:pfam09479  23 TLPADPTKEGYTFAGWYTDSDGTTKYTFGTDVTPTGDITLYA 64
PRK10819 PRK10819
transport protein TonB; Provisional
 784-875 8.38e-06

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 48.14  E-value: 8.38e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490226726 784 LEPESKPTPEktPEPDVMPEPEPIPVPDVPDVPYVPDDSWIPVPE-------NPEYSVVEQPVLDSvhsldKPVEYSVEQ 856
Cdd:PRK10819  58 LEPPQAVQPP--PEPVVEPEPEPEPIPEPPKEAPVVIPKPEPKPKpkpkpkpKPVKKVEEQPKREV-----KPVEPRPAS 130

                         90
                 ....*....|....*....
gi 490226726 857 RFKAVDAGESYNVKAPAKH 875
Cdd:PRK10819 131 PFENTAPARPTSSTATAAA 149
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 785-838 1.81e-05

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 48.23  E-value: 1.81e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 490226726 785 EPESKPTPEKtPEPDVMPEPEPiPVPDVPDVPYVPDDSWIPVPENPEYSVVEQP 838
Cdd:NF033839 406 KPEVKPQPEK-PKPEVKPQPEK-PKPEVKPQPEKPKPEVKPQPEKPKPEVKPQP 457
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 785-838 8.55e-05

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 46.30  E-value: 8.55e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 490226726 785 EPESKPTPEkTPEPDVMPEPEPiPVPDVPDVPYVPDDSWIPVPENPEYSVVEQP 838
Cdd:NF033839 373 KPEVKPQPE-TPKPEVKPQPEK-PKPEVKPQPEKPKPEVKPQPEKPKPEVKPQP 424
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
 785-811 9.14e-05

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 43.24  E-value: 9.14e-05
                          10        20
                  ....*....|....*....|....*..
gi 490226726  785 EPESKPTPEKTPEPDVMPEPEPIPVPD 811
Cdd:pfam05887  82 EPEPEPEPEPEPEPEPEPEPEPEPEPE 108
List_Bact_rpt TIGR02543
Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues ...
 712-748 6.09e-04

Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues in length, of at least two families of tandem repeats. These include 78-residue repeats from 2 to 15 in number, in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few bacteria. [Unknown function, General]


Pssm-ID: 274189 [Multi-domain]  Cd Length: 43  Bit Score: 38.37  E-value: 6.09e-04
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 490226726  712 PTKAGFTFNGWYQGENGT-GDAFTGDTVVANsDMTVYA 748
Cdd:TIGR02543   1 PTKTGYTFVGWTGDSTGTpVKNFTIPSGSTG-DLTLYA 37
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 785-908 1.36e-03

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 42.45  E-value: 1.36e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490226726 785 EPEsKPTPEKTPEPDvMPEPEPIPVPD-----VPDVPYVPDDSWIPVPENPEYSV---VEQPVLDSV--HSLDK----PV 850
Cdd:NF033839 423 QPE-KPKPEVKPQPE-KPKPEVKPQPEkpkpeVKPQPETPKPEVKPQPEKPKPEVkpqPEKPKPDNSkpQADDKkpstPN 500

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490226726 851 EYSVE-QRFKAVDAGESYNVKaPAKHLPDTGV--SLVMSISTLFVSLFAGFglsMFKSRRK 908
Cdd:NF033839 501 NLSKDkQPSNQASTNEKATNK-PKKSLPSTGSisNLALEIAGLLTLAGATI---LAKKRMK 557
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 785-838 2.32e-03

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 41.68  E-value: 2.32e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 490226726 785 EPESKPTPEkTPEPDVMPEPEPiPVPDVPDVPYVPDDSWIPVPENPEYSVVEQP 838
Cdd:NF033839 340 KPEVKPQLE-TPKPEVKPQPEK-PKPEVKPQPEKPKPEVKPQPETPKPEVKPQP 391
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 786-838 6.31e-03

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 40.14  E-value: 6.31e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 490226726 786 PESKPTPEK-----TPEPDVMPEPEPiPVPDVPDVPYVPDDSWIPVPENPEYSVVEQP 838
Cdd:NF033839 313 EPETPKPEVkpqleKPKPEVKPQPEK-PKPEVKPQLETPKPEVKPQPEKPKPEVKPQP 369
 
Name Accession Description Interval E-value
Flg_new pfam09479
Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core ...
 707-748 4.87e-08

Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core region of about 43 residues which occurs in more than 400 mostly secreted or cell surface-located proteins from over 300 eubacterial and few archaeal species. These proteins contain between one and 34 copies of the domain that often occur in tandem arrays with up to more than 20 copies.


Pssm-ID: 462813 [Multi-domain]  Cd Length: 65  Bit Score: 50.32  E-value: 4.87e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 490226726  707 SMPDNPTKAGFTFNGWYQGENGTGDAFTGDTVVANSDMTVYA 748
Cdd:pfam09479  23 TLPADPTKEGYTFAGWYTDSDGTTKYTFGTDVTPTGDITLYA 64
PRK10819 PRK10819
transport protein TonB; Provisional
 784-875 8.38e-06

transport protein TonB; Provisional


Pssm-ID: 236768 [Multi-domain]  Cd Length: 246  Bit Score: 48.14  E-value: 8.38e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490226726 784 LEPESKPTPEktPEPDVMPEPEPIPVPDVPDVPYVPDDSWIPVPE-------NPEYSVVEQPVLDSvhsldKPVEYSVEQ 856
Cdd:PRK10819  58 LEPPQAVQPP--PEPVVEPEPEPEPIPEPPKEAPVVIPKPEPKPKpkpkpkpKPVKKVEEQPKREV-----KPVEPRPAS 130

                         90
                 ....*....|....*....
gi 490226726 857 RFKAVDAGESYNVKAPAKH 875
Cdd:PRK10819 131 PFENTAPARPTSSTATAAA 149
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 785-838 1.81e-05

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 48.23  E-value: 1.81e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 490226726 785 EPESKPTPEKtPEPDVMPEPEPiPVPDVPDVPYVPDDSWIPVPENPEYSVVEQP 838
Cdd:NF033839 406 KPEVKPQPEK-PKPEVKPQPEK-PKPEVKPQPEKPKPEVKPQPEKPKPEVKPQP 457
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 785-838 8.55e-05

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 46.30  E-value: 8.55e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 490226726 785 EPESKPTPEkTPEPDVMPEPEPiPVPDVPDVPYVPDDSWIPVPENPEYSVVEQP 838
Cdd:NF033839 373 KPEVKPQPE-TPKPEVKPQPEK-PKPEVKPQPEKPKPEVKPQPEKPKPEVKPQP 424
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
 785-811 9.14e-05

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 43.24  E-value: 9.14e-05
                          10        20
                  ....*....|....*....|....*..
gi 490226726  785 EPESKPTPEKTPEPDVMPEPEPIPVPD 811
Cdd:pfam05887  82 EPEPEPEPEPEPEPEPEPEPEPEPEPE 108
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
 785-811 1.48e-04

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 42.47  E-value: 1.48e-04
                          10        20
                  ....*....|....*....|....*..
gi 490226726  785 EPESKPTPEKTPEPDVMPEPEPIPVPD 811
Cdd:pfam05887  84 EPEPEPEPEPEPEPEPEPEPEPEPEPE 110
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
 785-808 1.63e-04

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 42.47  E-value: 1.63e-04
                          10        20
                  ....*....|....*....|....
gi 490226726  785 EPESKPTPEKTPEPDVMPEPEPIP 808
Cdd:pfam05887  88 EPEPEPEPEPEPEPEPEPEPEPEP 111
PRK14960 PRK14960
DNA polymerase III subunit gamma/tau;
785-863 2.01e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237868 [Multi-domain]  Cd Length: 702  Bit Score: 45.04  E-value: 2.01e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490226726 785 EPESKPTPEKTPEPDVMPEPEPIPVPD------------------VPDVPYVPDDSWIPVPENPEYSVVEQPVLDSV--- 843
Cdd:PRK14960 421 EPEPEPEPEPEPEPEPEPEPEPQPNQDlmvfdpnhheliglesavVQETVSVLEEDFIPVPEQKLVQVQAETQVKQIepe 500

                         90       100
                 ....*....|....*....|....*....
gi 490226726 844 -HSLDKPV--------EYSVEQRFKAVDA 863
Cdd:PRK14960 501 pASTAEPIglfeassaEFSLAQDTSAYDL 529
List_Bact_rpt TIGR02543
Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues ...
 712-748 6.09e-04

Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues in length, of at least two families of tandem repeats. These include 78-residue repeats from 2 to 15 in number, in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few bacteria. [Unknown function, General]


Pssm-ID: 274189 [Multi-domain]  Cd Length: 43  Bit Score: 38.37  E-value: 6.09e-04
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 490226726  712 PTKAGFTFNGWYQGENGT-GDAFTGDTVVANsDMTVYA 748
Cdd:TIGR02543   1 PTKTGYTFVGWTGDSTGTpVKNFTIPSGSTG-DLTLYA 37
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
 778-816 8.54e-04

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 40.55  E-value: 8.54e-04
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 490226726  778 PEPKPVLEPESKPTPEKTPEPDVMPEPEPIPVPDVPDVP 816
Cdd:pfam05887  69 PEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP 107
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 785-908 1.36e-03

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 42.45  E-value: 1.36e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490226726 785 EPEsKPTPEKTPEPDvMPEPEPIPVPD-----VPDVPYVPDDSWIPVPENPEYSV---VEQPVLDSV--HSLDK----PV 850
Cdd:NF033839 423 QPE-KPKPEVKPQPE-KPKPEVKPQPEkpkpeVKPQPETPKPEVKPQPEKPKPEVkpqPEKPKPDNSkpQADDKkpstPN 500

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490226726 851 EYSVE-QRFKAVDAGESYNVKaPAKHLPDTGV--SLVMSISTLFVSLFAGFglsMFKSRRK 908
Cdd:NF033839 501 NLSKDkQPSNQASTNEKATNK-PKKSLPSTGSisNLALEIAGLLTLAGATI---LAKKRMK 557
Trypan_PARP pfam05887
Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei ...
 778-831 1.53e-03

Procyclic acidic repetitive protein (PARP); This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.


Pssm-ID: 368653  Cd Length: 134  Bit Score: 39.78  E-value: 1.53e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 490226726  778 PepkpvlEPESKPTPEKTPEPDVMPEPEPIPVPDvpdvpyvPDDSWIPVPEnPE 831
Cdd:pfam05887  71 P------EPEPEPEPEPEPEPEPEPEPEPEPEPE-------PEPEPEPEPE-PE 110
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 785-838 2.32e-03

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 41.68  E-value: 2.32e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 490226726 785 EPESKPTPEkTPEPDVMPEPEPiPVPDVPDVPYVPDDSWIPVPENPEYSVVEQP 838
Cdd:NF033839 340 KPEVKPQLE-TPKPEVKPQPEK-PKPEVKPQPEKPKPEVKPQPETPKPEVKPQP 391
TonB_N pfam16031
TonB polyproline region; TonB from Escherichia coli and its homologs are critical for the ...
 785-870 2.40e-03

TonB polyproline region; TonB from Escherichia coli and its homologs are critical for the uptake of siderophores through the outer membrane of Gram-negative bacteria using chemiosmotic energy. The proline-rich segment of TonB exists in a PPII-like conformation. The result implies that the proline-rich segment of TonB possesses a length of more than 15 nm, sufficient to span the periplasm of Gram-negative bacteria.


Pssm-ID: 435086 [Multi-domain]  Cd Length: 136  Bit Score: 39.23  E-value: 2.40e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490226726  785 EPESKPTPEKTPEPDVMpePEPIPVPDVPDVPYVPDdswiPVPEnPEYSVVEQPVLDSVHSLDKPVEYSVEQRFKAVDAG 864
Cdd:pfam16031  33 APQPAPEPVVEPEPEPE--PEPLPEPPAPVVIHKPK----PKPK-PKPKPKPVKKVEVPKREVKPVEPRPESPFENAPSA 105


                  ....*.
gi 490226726  865 ESYNVK 870
Cdd:pfam16031 106 LVAPAR 111
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
 786-838 6.31e-03

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 40.14  E-value: 6.31e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 490226726 786 PESKPTPEK-----TPEPDVMPEPEPiPVPDVPDVPYVPDDSWIPVPENPEYSVVEQP 838
Cdd:NF033839 313 EPETPKPEVkpqleKPKPEVKPQPEK-PKPEVKPQLETPKPEVKPQPEKPKPEVKPQP 369
PRK09752 PRK09752
AIDA-I family autotransporter YfaL;
786-819 7.67e-03

AIDA-I family autotransporter YfaL;


Pssm-ID: 182059 [Multi-domain]  Cd Length: 1250  Bit Score: 40.04  E-value: 7.67e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 490226726  786 PESKPTPEKTPEPDVMPEPEPIPVPDvPDVPYVP 819
Cdd:PRK09752  920 PPSPPDPDPTPDPDPTPDPDPTPDPE-PTPAYQP 952
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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