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Conserved domains on  [gi|490236703|ref|WP_004135012|]
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MULTISPECIES: aspartate--tRNA ligase [Gardnerella]

Protein Classification

aspartate--tRNA ligase family protein( domain architecture ID 11478785)

aspartate--tRNA ligase family protein such as aspartate--tRNA ligase that attaches aspartate to the 3' OH group of ribose of its cognate tRNA(Asp) and aspartate--tRNA(Asp/Asn) ligase that aspartylates both tRNA(Asp) and tRNA(Asn)

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
aspS PRK00476
aspartyl-tRNA synthetase; Validated
6-596 0e+00

aspartyl-tRNA synthetase; Validated


:

Pssm-ID: 234775 [Multi-domain]  Cd Length: 588  Bit Score: 1009.98  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703   6 YRTHHAVEVTEELVGQKVTIAGWVDRRRDHGGVAFVDVRDNTGLVQVVIYDE----ETARPLRSEFVVQVTGEVRLRPDG 81
Cdd:PRK00476   3 MRTHYCGELRESHVGQTVTLCGWVHRRRDHGGLIFIDLRDREGIVQVVFDPDaeafEVAESLRSEYVIQVTGTVRARPEG 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  82 NENDHLATGKIEIVAQTVTILAKSDALPFQVSTALENesenklpSEDVRLKYRYLDLRRPSMQRNLKLRSNMAKAARHAL 161
Cdd:PRK00476  83 TVNPNLPTGEIEVLASELEVLNKSKTLPFPIDDEEDV-------SEELRLKYRYLDLRRPEMQKNLKLRSKVTSAIRNFL 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 162 EDMDFTEVETPTFIKSTPEGARDFVVPARLVPGSWYALPQSPQLLKQLLMVSGVERYYQLARCYRDEDFRADRQPEFTQL 241
Cdd:PRK00476 156 DDNGFLEIETPILTKSTPEGARDYLVPSRVHPGKFYALPQSPQLFKQLLMVAGFDRYYQIARCFRDEDLRADRQPEFTQI 235
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 242 DMEMSFASQEDVMAMAERVIAAIWKEA-GHEITLPLPRITWQEAMDKYGSDKPDLRFGNPLIELTDFFKNTPFRVFQA-- 318
Cdd:PRK00476 236 DIEMSFVTQEDVMALMEGLIRHVFKEVlGVDLPTPFPRMTYAEAMRRYGSDKPDLRFGLELVDVTDLFKDSGFKVFAGaa 315
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 319 ---SYVGAVLFKGGAETP-RRQFDAWQDWAKQRGAKGLAYVVFGEDGeLKGPVAKNLSEEERAGLKEAVGAEDGDAVFFA 394
Cdd:PRK00476 316 ndgGRVKAIRVPGGAAQLsRKQIDELTEFAKIYGAKGLAYIKVNEDG-LKGPIAKFLSEEELAALLERTGAKDGDLIFFG 394
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 395 AGSRESSQLLLGAVRVELASRAGLLHPDEFAFTWVVDFPLFKRTDdpddddvavGHSKWTSMHHPFTMPSADWIDKFDK- 473
Cdd:PRK00476 395 ADKAKVVNDALGALRLKLGKELGLIDEDKFAFLWVVDFPMFEYDE---------EEGRWVAAHHPFTMPKDEDLDELETt 465
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 474 DPEHAMSDSYDIVCNGNEMGGGSVRIHRDDIQDRVLNVLGIDKAEADEKFGFLLEAFKYGAPPHAGIALGWDRTAAILAG 553
Cdd:PRK00476 466 DPGKARAYAYDLVLNGYELGGGSIRIHRPEIQEKVFEILGISEEEAEEKFGFLLDALKYGAPPHGGIAFGLDRLVMLLAG 545
                        570       580       590       600
                 ....*....|....*....|....*....|....*....|...
gi 490236703 554 ASSIRDVIAFPKAGGGRDPLTGAPAPISDEQRAETGVDYDPEE 596
Cdd:PRK00476 546 ADSIRDVIAFPKTQSAQDLLTGAPSPVDEKQLRELGIRLRKKE 588
 
Name Accession Description Interval E-value
aspS PRK00476
aspartyl-tRNA synthetase; Validated
6-596 0e+00

aspartyl-tRNA synthetase; Validated


Pssm-ID: 234775 [Multi-domain]  Cd Length: 588  Bit Score: 1009.98  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703   6 YRTHHAVEVTEELVGQKVTIAGWVDRRRDHGGVAFVDVRDNTGLVQVVIYDE----ETARPLRSEFVVQVTGEVRLRPDG 81
Cdd:PRK00476   3 MRTHYCGELRESHVGQTVTLCGWVHRRRDHGGLIFIDLRDREGIVQVVFDPDaeafEVAESLRSEYVIQVTGTVRARPEG 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  82 NENDHLATGKIEIVAQTVTILAKSDALPFQVSTALENesenklpSEDVRLKYRYLDLRRPSMQRNLKLRSNMAKAARHAL 161
Cdd:PRK00476  83 TVNPNLPTGEIEVLASELEVLNKSKTLPFPIDDEEDV-------SEELRLKYRYLDLRRPEMQKNLKLRSKVTSAIRNFL 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 162 EDMDFTEVETPTFIKSTPEGARDFVVPARLVPGSWYALPQSPQLLKQLLMVSGVERYYQLARCYRDEDFRADRQPEFTQL 241
Cdd:PRK00476 156 DDNGFLEIETPILTKSTPEGARDYLVPSRVHPGKFYALPQSPQLFKQLLMVAGFDRYYQIARCFRDEDLRADRQPEFTQI 235
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 242 DMEMSFASQEDVMAMAERVIAAIWKEA-GHEITLPLPRITWQEAMDKYGSDKPDLRFGNPLIELTDFFKNTPFRVFQA-- 318
Cdd:PRK00476 236 DIEMSFVTQEDVMALMEGLIRHVFKEVlGVDLPTPFPRMTYAEAMRRYGSDKPDLRFGLELVDVTDLFKDSGFKVFAGaa 315
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 319 ---SYVGAVLFKGGAETP-RRQFDAWQDWAKQRGAKGLAYVVFGEDGeLKGPVAKNLSEEERAGLKEAVGAEDGDAVFFA 394
Cdd:PRK00476 316 ndgGRVKAIRVPGGAAQLsRKQIDELTEFAKIYGAKGLAYIKVNEDG-LKGPIAKFLSEEELAALLERTGAKDGDLIFFG 394
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 395 AGSRESSQLLLGAVRVELASRAGLLHPDEFAFTWVVDFPLFKRTDdpddddvavGHSKWTSMHHPFTMPSADWIDKFDK- 473
Cdd:PRK00476 395 ADKAKVVNDALGALRLKLGKELGLIDEDKFAFLWVVDFPMFEYDE---------EEGRWVAAHHPFTMPKDEDLDELETt 465
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 474 DPEHAMSDSYDIVCNGNEMGGGSVRIHRDDIQDRVLNVLGIDKAEADEKFGFLLEAFKYGAPPHAGIALGWDRTAAILAG 553
Cdd:PRK00476 466 DPGKARAYAYDLVLNGYELGGGSIRIHRPEIQEKVFEILGISEEEAEEKFGFLLDALKYGAPPHGGIAFGLDRLVMLLAG 545
                        570       580       590       600
                 ....*....|....*....|....*....|....*....|...
gi 490236703 554 ASSIRDVIAFPKAGGGRDPLTGAPAPISDEQRAETGVDYDPEE 596
Cdd:PRK00476 546 ADSIRDVIAFPKTQSAQDLLTGAPSPVDEKQLRELGIRLRKKE 588
AspS COG0173
Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Aspartyl-tRNA ...
6-598 0e+00

Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Aspartyl-tRNA synthetase is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases


Pssm-ID: 439943 [Multi-domain]  Cd Length: 589  Bit Score: 1005.68  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703   6 YRTHHAVEVTEELVGQKVTIAGWVDRRRDHGGVAFVDVRDNTGLVQVVIYDE------ETARPLRSEFVVQVTGEVRLRP 79
Cdd:COG0173    2 YRTHYCGELRESDVGQEVTLSGWVHRRRDHGGLIFIDLRDRYGITQVVFDPDdsaeafEKAEKLRSEYVIAVTGKVRARP 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  80 DGNENDHLATGKIEIVAQTVTILAKSDALPFQVStalenesENKLPSEDVRLKYRYLDLRRPSMQRNLKLRSNMAKAARH 159
Cdd:COG0173   82 EGTVNPKLPTGEIEVLASELEILNKAKTPPFQID-------DDTDVSEELRLKYRYLDLRRPEMQKNLILRHKVTKAIRN 154
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 160 ALEDMDFTEVETPTFIKSTPEGARDFVVPARLVPGSWYALPQSPQLLKQLLMVSGVERYYQLARCYRDEDFRADRQPEFT 239
Cdd:COG0173  155 YLDENGFLEIETPILTKSTPEGARDYLVPSRVHPGKFYALPQSPQLFKQLLMVSGFDRYFQIARCFRDEDLRADRQPEFT 234
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 240 QLDMEMSFASQEDVMAMAERVIAAIWKE-AGHEITLPLPRITWQEAMDKYGSDKPDLRFGNPLIELTDFFKNTPFRVFQA 318
Cdd:COG0173  235 QLDIEMSFVDQEDVFELMEGLIRHLFKEvLGVELPTPFPRMTYAEAMERYGSDKPDLRFGLELVDVTDIFKDSGFKVFAG 314
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 319 -----SYVGAVLFKGGAETPRRQFDAWQDWAKQRGAKGLAYVVFGEDGeLKGPVAKNLSEEERAGLKEAVGAEDGDAVFF 393
Cdd:COG0173  315 aaengGRVKAINVPGGASLSRKQIDELTEFAKQYGAKGLAYIKVNEDG-LKSPIAKFLSEEELAAILERLGAKPGDLIFF 393
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 394 AAGSRESSQLLLGAVRVELASRAGLLHPDEFAFTWVVDFPLFKRTDDPddddvavghSKWTSMHHPFTMPSADWIDKFDK 473
Cdd:COG0173  394 VADKPKVVNKALGALRLKLGKELGLIDEDEFAFLWVVDFPLFEYDEEE---------GRWVAMHHPFTMPKDEDLDLLET 464
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 474 DPEHAMSDSYDIVCNGNEMGGGSVRIHRDDIQDRVLNVLGIDKAEADEKFGFLLEAFKYGAPPHAGIALGWDRTAAILAG 553
Cdd:COG0173  465 DPGKVRAKAYDLVLNGYELGGGSIRIHDPELQEKVFELLGISEEEAEEKFGFLLEAFKYGAPPHGGIAFGLDRLVMLLAG 544
                        570       580       590       600
                 ....*....|....*....|....*....|....*....|....*
gi 490236703 554 ASSIRDVIAFPKAGGGRDPLTGAPAPISDEQRAETGVDYDPEEDE 598
Cdd:COG0173  545 EDSIRDVIAFPKTQSAQDLMTGAPSEVDEKQLKELHIRLRPPEKK 589
aspS_bact TIGR00459
aspartyl-tRNA synthetase, bacterial type; Asparate--tRNA ligases in this family may be ...
7-594 0e+00

aspartyl-tRNA synthetase, bacterial type; Asparate--tRNA ligases in this family may be discriminating (6.1.1.12) or nondiscriminating (6.1.1.23). In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences. [Protein synthesis, tRNA aminoacylation]


Pssm-ID: 211576 [Multi-domain]  Cd Length: 583  Bit Score: 729.23  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703    7 RTHHAVEVTEELVGQKVTIAGWVDRRRDHGGVAFVDVRDNTGLVQVVIYDEETARP----LRSEFVVQVTGEVRLRPDGN 82
Cdd:TIGR00459   2 RTHYCGQLRTEHLGQTVTLAGWVNRRRDLGGLIFIDLRDRSGIVQVVCDPDADALKlakgLRNEDVVQVKGKVSARPEGN 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703   83 ENDHLATGKIEIVAQTVTILAKSDALPFQVStalENESEnklpsEDVRLKYRYLDLRRPSMQRNLKLRSNMAKAARHALE 162
Cdd:TIGR00459  82 INRNLDTGEIEILAESITLLNKSKTPPLIIE---KTDAE-----EEVRLKYRYLDLRRPEMQQRLKLRHKVTKAVRNFLD 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  163 DMDFTEVETPTFIKSTPEGARDFVVPARLVPGSWYALPQSPQLLKQLLMVSGVERYYQLARCYRDEDFRADRQPEFTQLD 242
Cdd:TIGR00459 154 QQGFLEIETPMLTKSTPEGARDYLVPSRVHKGEFYALPQSPQLFKQLLMVSGVDRYYQIARCFRDEDLRADRQPEFTQID 233
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  243 MEMSFASQEDVMAMAERVIAAIWKE-AGHEITLPLPRITWQEAMDKYGSDKPDLRFGNPLIELTDFFKNTPFRVFQA--- 318
Cdd:TIGR00459 234 MEMSFMTQEDVMELIEKLVSHVFLEvKGIDLKKPFPVMTYAEAMERYGSDKPDLRFPLELIDVTDLFKDSEFKVFSNlin 313
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  319 --SYVGAVLFKGGAET-PRRQFDAWQDWAKQRGAKGLAYVVFGEDGeLKGPVAKNLSEEERAGLKEAVGAEDGDAVFFAA 395
Cdd:TIGR00459 314 dgGRVKAIRVPGGWAElSRKSIKELRKFAKEYGAKGLAYLKVNEDG-INSPIKKFLDEKKGKILLERTDAQNGDILLFGA 392
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  396 GSRESSQLLLGAVRVELASRAGLLHPDEFAFTWVVDFPLFKRTddpddddvavGHSKWTSMHHPFTMPSADWIDKFDKDP 475
Cdd:TIGR00459 393 GSKKIVLDALGALRLKLGKDLGLVDPDLFSFLWVVDFPMFEKD----------KEGRLCAAHHPFTMPKDEDLENLEAAP 462
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  476 EHAMSDSYDIVCNGNEMGGGSVRIHRDDIQDRVLNVLGIDKAEADEKFGFLLEAFKYGAPPHAGIALGWDRTAAILAGAS 555
Cdd:TIGR00459 463 EEALAEAYDLVLNGVELGGGSIRIHDPEVQKKVFEILGIDPEEAREKFGFLLEAFKYGTPPHAGFALGLDRLMMLLTGTD 542
                         570       580       590
                  ....*....|....*....|....*....|....*....
gi 490236703  556 SIRDVIAFPKAGGGRDPLTGAPAPISDEQRAETGVDYDP 594
Cdd:TIGR00459 543 NIRDVIAFPKTTAAACLMTEAPSFIDEKQLEELSIKYVV 581
AspRS_core cd00777
Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its ...
147-565 3.57e-151

Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.


Pssm-ID: 238400 [Multi-domain]  Cd Length: 280  Bit Score: 436.24  E-value: 3.57e-151
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 147 LKLRSNMAKAARHALEDMDFTEVETPTFIKSTPEGARDFVVPARLVPGSWYALPQSPQLLKQLLMVSGVERYYQLARCYR 226
Cdd:cd00777    1 LRLRSRVIKAIRNFLDEQGFVEIETPILTKSTPEGARDFLVPSRLHPGKFYALPQSPQLFKQLLMVSGFDRYFQIARCFR 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 227 DEDFRADRQPEFTQLDMEMSFASQEDVMAMAERVIAAIWKEA-GHEITLPLPRITWQEAMDKYGsdkpdlrfgnplielt 305
Cdd:cd00777   81 DEDLRADRQPEFTQIDIEMSFVDQEDIMSLIEGLLKYVFKEVlGVELTTPFPRMTYAEAMERYG---------------- 144
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 306 dffkntpfrvfqasyvgavlfkggaetprrqfdawqdwakqrgakglayvvfgedgelkgpvaknlseeeraglkeavga 385
Cdd:cd00777      --------------------------------------------------------------------------------
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 386 edgdavffaagsressqlllgavrvelasragllhpdeFAFTWVVDFPLFKRTDDpddddvavgHSKWTSMHHPFTMPSA 465
Cdd:cd00777  145 --------------------------------------FKFLWIVDFPLFEWDEE---------EGRLVSAHHPFTAPKE 177
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 466 DWIDKFDKDPEHAMSDSYDIVCNGNEMGGGSVRIHRDDIQDRVLNVLGIDKAEADEKFGFLLEAFKYGAPPHAGIALGWD 545
Cdd:cd00777  178 EDLDLLEKDPEDARAQAYDLVLNGVELGGGSIRIHDPDIQEKVFEILGLSEEEAEEKFGFLLEAFKYGAPPHGGIALGLD 257
                        410       420
                 ....*....|....*....|
gi 490236703 546 RTAAILAGASSIRDVIAFPK 565
Cdd:cd00777  258 RLVMLLTGSESIRDVIAFPK 277
tRNA-synt_2 pfam00152
tRNA synthetases class II (D, K and N);
126-565 2.43e-132

tRNA synthetases class II (D, K and N);


Pssm-ID: 425487 [Multi-domain]  Cd Length: 318  Bit Score: 389.62  E-value: 2.43e-132
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  126 SEDVRLKYRYLDLRRPSMQRNLKLRSNMAKAARHALEDMDFTEVETPTFIKS-TPEGARDFVVPARLVpGSWYALPQSPQ 204
Cdd:pfam00152   1 DEETRLKYRYLDLRRPKMQANLKLRSKIIKAIRNFLDENGFLEVETPILTKSaTPEGARDFLVPSRAL-GKFYALPQSPQ 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  205 LLKQLLMVSGVERYYQLARCYRDEDFRADRQPEFTQLDMEMSFASQEDVMAMAERVIAAIWKEAGH-----------EIT 273
Cdd:pfam00152  80 LYKQLLMVAGFDRVFQIARCFRDEDLRTDRQPEFTQLDLEMSFVDYEDVMDLTEELIKEIFKEVEGiakeleggtllDLK 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  274 LPLPRITWQEAMDK----------YGSDKPDLRFGNPLIeltdffkntpfrvfqasyvgavlfkggaetprrqfdawqdw 343
Cdd:pfam00152 160 KPFPRITYAEAIEKlngkdveelgYGSDKPDLRFLLELV----------------------------------------- 198
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  344 akqrgakglayvvfgedgelkgpvaknlseeeraglkeavgaedgdavffaagsressqlllgavrvelasraglLHPDE 423
Cdd:pfam00152 199 ---------------------------------------------------------------------------IDKNK 203
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  424 FAFTWVVDFPlfkrtddpddddvavghskwtSMHHPFTMPSADWIDkfdkdpehAMSDSYDIVCNGNEMGGGSVRIHRDD 503
Cdd:pfam00152 204 FNPLWVTDFP---------------------AEHHPFTMPKDEDDP--------ALAEAFDLVLNGVEIGGGSIRIHDPE 254
                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490236703  504 IQDRVLNVLGIDKAEADEKFGFLLEAFKYGAPPHAGIALGWDRTAAILAGASSIRDVIAFPK 565
Cdd:pfam00152 255 LQEERFEEQGLDPEEAEEKFGFYLDALKYGAPPHGGLGIGLDRLVMLLTGLESIREVIAFPK 316
 
Name Accession Description Interval E-value
aspS PRK00476
aspartyl-tRNA synthetase; Validated
6-596 0e+00

aspartyl-tRNA synthetase; Validated


Pssm-ID: 234775 [Multi-domain]  Cd Length: 588  Bit Score: 1009.98  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703   6 YRTHHAVEVTEELVGQKVTIAGWVDRRRDHGGVAFVDVRDNTGLVQVVIYDE----ETARPLRSEFVVQVTGEVRLRPDG 81
Cdd:PRK00476   3 MRTHYCGELRESHVGQTVTLCGWVHRRRDHGGLIFIDLRDREGIVQVVFDPDaeafEVAESLRSEYVIQVTGTVRARPEG 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  82 NENDHLATGKIEIVAQTVTILAKSDALPFQVSTALENesenklpSEDVRLKYRYLDLRRPSMQRNLKLRSNMAKAARHAL 161
Cdd:PRK00476  83 TVNPNLPTGEIEVLASELEVLNKSKTLPFPIDDEEDV-------SEELRLKYRYLDLRRPEMQKNLKLRSKVTSAIRNFL 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 162 EDMDFTEVETPTFIKSTPEGARDFVVPARLVPGSWYALPQSPQLLKQLLMVSGVERYYQLARCYRDEDFRADRQPEFTQL 241
Cdd:PRK00476 156 DDNGFLEIETPILTKSTPEGARDYLVPSRVHPGKFYALPQSPQLFKQLLMVAGFDRYYQIARCFRDEDLRADRQPEFTQI 235
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 242 DMEMSFASQEDVMAMAERVIAAIWKEA-GHEITLPLPRITWQEAMDKYGSDKPDLRFGNPLIELTDFFKNTPFRVFQA-- 318
Cdd:PRK00476 236 DIEMSFVTQEDVMALMEGLIRHVFKEVlGVDLPTPFPRMTYAEAMRRYGSDKPDLRFGLELVDVTDLFKDSGFKVFAGaa 315
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 319 ---SYVGAVLFKGGAETP-RRQFDAWQDWAKQRGAKGLAYVVFGEDGeLKGPVAKNLSEEERAGLKEAVGAEDGDAVFFA 394
Cdd:PRK00476 316 ndgGRVKAIRVPGGAAQLsRKQIDELTEFAKIYGAKGLAYIKVNEDG-LKGPIAKFLSEEELAALLERTGAKDGDLIFFG 394
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 395 AGSRESSQLLLGAVRVELASRAGLLHPDEFAFTWVVDFPLFKRTDdpddddvavGHSKWTSMHHPFTMPSADWIDKFDK- 473
Cdd:PRK00476 395 ADKAKVVNDALGALRLKLGKELGLIDEDKFAFLWVVDFPMFEYDE---------EEGRWVAAHHPFTMPKDEDLDELETt 465
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 474 DPEHAMSDSYDIVCNGNEMGGGSVRIHRDDIQDRVLNVLGIDKAEADEKFGFLLEAFKYGAPPHAGIALGWDRTAAILAG 553
Cdd:PRK00476 466 DPGKARAYAYDLVLNGYELGGGSIRIHRPEIQEKVFEILGISEEEAEEKFGFLLDALKYGAPPHGGIAFGLDRLVMLLAG 545
                        570       580       590       600
                 ....*....|....*....|....*....|....*....|...
gi 490236703 554 ASSIRDVIAFPKAGGGRDPLTGAPAPISDEQRAETGVDYDPEE 596
Cdd:PRK00476 546 ADSIRDVIAFPKTQSAQDLLTGAPSPVDEKQLRELGIRLRKKE 588
AspS COG0173
Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Aspartyl-tRNA ...
6-598 0e+00

Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Aspartyl-tRNA synthetase is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases


Pssm-ID: 439943 [Multi-domain]  Cd Length: 589  Bit Score: 1005.68  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703   6 YRTHHAVEVTEELVGQKVTIAGWVDRRRDHGGVAFVDVRDNTGLVQVVIYDE------ETARPLRSEFVVQVTGEVRLRP 79
Cdd:COG0173    2 YRTHYCGELRESDVGQEVTLSGWVHRRRDHGGLIFIDLRDRYGITQVVFDPDdsaeafEKAEKLRSEYVIAVTGKVRARP 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  80 DGNENDHLATGKIEIVAQTVTILAKSDALPFQVStalenesENKLPSEDVRLKYRYLDLRRPSMQRNLKLRSNMAKAARH 159
Cdd:COG0173   82 EGTVNPKLPTGEIEVLASELEILNKAKTPPFQID-------DDTDVSEELRLKYRYLDLRRPEMQKNLILRHKVTKAIRN 154
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 160 ALEDMDFTEVETPTFIKSTPEGARDFVVPARLVPGSWYALPQSPQLLKQLLMVSGVERYYQLARCYRDEDFRADRQPEFT 239
Cdd:COG0173  155 YLDENGFLEIETPILTKSTPEGARDYLVPSRVHPGKFYALPQSPQLFKQLLMVSGFDRYFQIARCFRDEDLRADRQPEFT 234
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 240 QLDMEMSFASQEDVMAMAERVIAAIWKE-AGHEITLPLPRITWQEAMDKYGSDKPDLRFGNPLIELTDFFKNTPFRVFQA 318
Cdd:COG0173  235 QLDIEMSFVDQEDVFELMEGLIRHLFKEvLGVELPTPFPRMTYAEAMERYGSDKPDLRFGLELVDVTDIFKDSGFKVFAG 314
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 319 -----SYVGAVLFKGGAETPRRQFDAWQDWAKQRGAKGLAYVVFGEDGeLKGPVAKNLSEEERAGLKEAVGAEDGDAVFF 393
Cdd:COG0173  315 aaengGRVKAINVPGGASLSRKQIDELTEFAKQYGAKGLAYIKVNEDG-LKSPIAKFLSEEELAAILERLGAKPGDLIFF 393
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 394 AAGSRESSQLLLGAVRVELASRAGLLHPDEFAFTWVVDFPLFKRTDDPddddvavghSKWTSMHHPFTMPSADWIDKFDK 473
Cdd:COG0173  394 VADKPKVVNKALGALRLKLGKELGLIDEDEFAFLWVVDFPLFEYDEEE---------GRWVAMHHPFTMPKDEDLDLLET 464
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 474 DPEHAMSDSYDIVCNGNEMGGGSVRIHRDDIQDRVLNVLGIDKAEADEKFGFLLEAFKYGAPPHAGIALGWDRTAAILAG 553
Cdd:COG0173  465 DPGKVRAKAYDLVLNGYELGGGSIRIHDPELQEKVFELLGISEEEAEEKFGFLLEAFKYGAPPHGGIAFGLDRLVMLLAG 544
                        570       580       590       600
                 ....*....|....*....|....*....|....*....|....*
gi 490236703 554 ASSIRDVIAFPKAGGGRDPLTGAPAPISDEQRAETGVDYDPEEDE 598
Cdd:COG0173  545 EDSIRDVIAFPKTQSAQDLMTGAPSEVDEKQLKELHIRLRPPEKK 589
aspS_bact TIGR00459
aspartyl-tRNA synthetase, bacterial type; Asparate--tRNA ligases in this family may be ...
7-594 0e+00

aspartyl-tRNA synthetase, bacterial type; Asparate--tRNA ligases in this family may be discriminating (6.1.1.12) or nondiscriminating (6.1.1.23). In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences. [Protein synthesis, tRNA aminoacylation]


Pssm-ID: 211576 [Multi-domain]  Cd Length: 583  Bit Score: 729.23  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703    7 RTHHAVEVTEELVGQKVTIAGWVDRRRDHGGVAFVDVRDNTGLVQVVIYDEETARP----LRSEFVVQVTGEVRLRPDGN 82
Cdd:TIGR00459   2 RTHYCGQLRTEHLGQTVTLAGWVNRRRDLGGLIFIDLRDRSGIVQVVCDPDADALKlakgLRNEDVVQVKGKVSARPEGN 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703   83 ENDHLATGKIEIVAQTVTILAKSDALPFQVStalENESEnklpsEDVRLKYRYLDLRRPSMQRNLKLRSNMAKAARHALE 162
Cdd:TIGR00459  82 INRNLDTGEIEILAESITLLNKSKTPPLIIE---KTDAE-----EEVRLKYRYLDLRRPEMQQRLKLRHKVTKAVRNFLD 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  163 DMDFTEVETPTFIKSTPEGARDFVVPARLVPGSWYALPQSPQLLKQLLMVSGVERYYQLARCYRDEDFRADRQPEFTQLD 242
Cdd:TIGR00459 154 QQGFLEIETPMLTKSTPEGARDYLVPSRVHKGEFYALPQSPQLFKQLLMVSGVDRYYQIARCFRDEDLRADRQPEFTQID 233
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  243 MEMSFASQEDVMAMAERVIAAIWKE-AGHEITLPLPRITWQEAMDKYGSDKPDLRFGNPLIELTDFFKNTPFRVFQA--- 318
Cdd:TIGR00459 234 MEMSFMTQEDVMELIEKLVSHVFLEvKGIDLKKPFPVMTYAEAMERYGSDKPDLRFPLELIDVTDLFKDSEFKVFSNlin 313
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  319 --SYVGAVLFKGGAET-PRRQFDAWQDWAKQRGAKGLAYVVFGEDGeLKGPVAKNLSEEERAGLKEAVGAEDGDAVFFAA 395
Cdd:TIGR00459 314 dgGRVKAIRVPGGWAElSRKSIKELRKFAKEYGAKGLAYLKVNEDG-INSPIKKFLDEKKGKILLERTDAQNGDILLFGA 392
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  396 GSRESSQLLLGAVRVELASRAGLLHPDEFAFTWVVDFPLFKRTddpddddvavGHSKWTSMHHPFTMPSADWIDKFDKDP 475
Cdd:TIGR00459 393 GSKKIVLDALGALRLKLGKDLGLVDPDLFSFLWVVDFPMFEKD----------KEGRLCAAHHPFTMPKDEDLENLEAAP 462
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  476 EHAMSDSYDIVCNGNEMGGGSVRIHRDDIQDRVLNVLGIDKAEADEKFGFLLEAFKYGAPPHAGIALGWDRTAAILAGAS 555
Cdd:TIGR00459 463 EEALAEAYDLVLNGVELGGGSIRIHDPEVQKKVFEILGIDPEEAREKFGFLLEAFKYGTPPHAGFALGLDRLMMLLTGTD 542
                         570       580       590
                  ....*....|....*....|....*....|....*....
gi 490236703  556 SIRDVIAFPKAGGGRDPLTGAPAPISDEQRAETGVDYDP 594
Cdd:TIGR00459 543 NIRDVIAFPKTTAAACLMTEAPSFIDEKQLEELSIKYVV 581
PLN02903 PLN02903
aminoacyl-tRNA ligase
7-587 0e+00

aminoacyl-tRNA ligase


Pssm-ID: 215490 [Multi-domain]  Cd Length: 652  Bit Score: 624.89  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703   7 RTHHAVEVTEELVGQKVTIAGWVDRRRDHGGVAFVDVRDNTGLVQVVIYDEE------TARPLRSEFVVQVTGEVRLRPD 80
Cdd:PLN02903  59 RSHLCGALSVNDVGSRVTLCGWVDLHRDMGGLTFLDVRDHTGIVQVVTLPDEfpeahrTANRLRNEYVVAVEGTVRSRPQ 138
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  81 GNENDHLATGKIEIVAQTVTIL-AKSDALPFQVSTALENESEnklPSEDVRLKYRYLDLRRPSMQRNLKLRSNMAKAARH 159
Cdd:PLN02903 139 ESPNKKMKTGSVEVVAESVDILnVVTKSLPFLVTTADEQKDS---IKEEVRLRYRVLDLRRPQMNANLRLRHRVVKLIRR 215
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 160 ALEDM-DFTEVETPTFIKSTPEGARDFVVPARLVPGSWYALPQSPQLLKQLLMVSGVERYYQLARCYRDEDFRADRQPEF 238
Cdd:PLN02903 216 YLEDVhGFVEIETPILSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDRYYQIARCFRDEDLRADRQPEF 295
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 239 TQLDMEMSFASQEDVMAMAERVIAAIWKE-AGHEITLPLPRITWQEAMDKYGSDKPDLRFGNPLIELTDFFKNTPFRVFQ 317
Cdd:PLN02903 296 TQLDMELAFTPLEDMLKLNEDLIRQVFKEiKGVQLPNPFPRLTYAEAMSKYGSDKPDLRYGLELVDVSDVFAESSFKVFA 375
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 318 ASY-----VGAVLFKGGAE----TPRRQFDAWQDwAKQRGAKGLAYVVFGEDGELKGPVA--KNLSEEERAGLKEAVGAE 386
Cdd:PLN02903 376 GALesggvVKAICVPDGKKisnnTALKKGDIYNE-AIKSGAKGLAFLKVLDDGELEGIKAlvESLSPEQAEQLLAACGAG 454
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 387 DGDAVFFAAGSRESSQLLLGAVRVELASRAGLLHPDEFAFTWVVDFPLFKRTDDpddddvavgHSKWTSMHHPFTMPSAD 466
Cdd:PLN02903 455 PGDLILFAAGPTSSVNKTLDRLRQFIAKTLDLIDPSRHSILWVTDFPMFEWNED---------EQRLEALHHPFTAPNPE 525
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 467 WIDkfdkDPEHAMSDSYDIVCNGNEMGGGSVRIHRDDIQDRVLNVLGIDKAEADEKFGFLLEAFKYGAPPHAGIALGWDR 546
Cdd:PLN02903 526 DMG----DLSSARALAYDMVYNGVEIGGGSLRIYRRDVQQKVLEAIGLSPEEAESKFGYLLEALDMGAPPHGGIAYGLDR 601
                        570       580       590       600
                 ....*....|....*....|....*....|....*....|.
gi 490236703 547 TAAILAGASSIRDVIAFPKAGGGRDPLTGAPAPISDEQRAE 587
Cdd:PLN02903 602 LVMLLAGAKSIRDVIAFPKTTTAQCALTRAPSEVDDKQLQD 642
PRK12820 PRK12820
bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; ...
19-590 3.48e-179

bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional


Pssm-ID: 105955 [Multi-domain]  Cd Length: 706  Bit Score: 523.78  E-value: 3.48e-179
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  19 VGQKVTIAGWVDRRRDHGGVAFVDVRDNTGLVQVVIYDEETAR-------PLRSEFVVQVTGEVRLRPDGNENDHLATGK 91
Cdd:PRK12820  17 TGREVCLAGWVDAFRDHGELLFIHLRDRNGFIQAVFSPEAAPAdvyelaaSLRAEFCVALQGEVQKRLEETENPHIETGD 96
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  92 IEIVAQTVTILAKSDALPFQVS----TALENESENKLPSEDVRLKYRYLDLRRPSMQRNLKLRSNMAKAARHALEDMDFT 167
Cdd:PRK12820  97 IEVFVRELSILAASEALPFAISdkamTAGAGSAGADAVNEDLRLQYRYLDIRRPAMQDHLAKRHRIIKCARDFLDSRGFL 176
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 168 EVETPTFIKSTPEGARDFVVPARLVPGSWYALPQSPQLLKQLLMVSGVERYYQLARCYRDEDFRADRQPEFTQLDMEMSF 247
Cdd:PRK12820 177 EIETPILTKSTPEGARDYLVPSRIHPKEFYALPQSPQLFKQLLMIAGFERYFQLARCFRDEDLRPNRQPEFTQLDIEASF 256
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 248 ASQEDVMAMAERVIAAIWKEAGHEITLPLPRITWQEAMDKYGSDKPDLRFGNPLIELTDFFKNTPFRVFQ-----ASYVG 322
Cdd:PRK12820 257 IDEEFIFELIEELTARMFAIGGIALPRPFPRMPYAEAMDTTGSDRPDLRFDLKFADATDIFENTRYGIFKqilqrGGRIK 336
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 323 AVLFKGGAETPRR---QFDAWQDWAKQRGAKGLAYVVfGEDGELKGPVAKNLSEEERAGLKEAVGAEDGDAVFFAA-GSR 398
Cdd:PRK12820 337 GINIKGQSEKLSKnvlQNEYAKEIAPSFGAKGMTWMR-AEAGGLDSNIVQFFSADEKEALKRRFHAEDGDVIIMIAdASC 415
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 399 ESSQLLLGAVRVELASRAGLLHPDEFAFTWVVDFPLFKRTDDPDDddvavghskwTSMHHPFTMPsadwiDKFDKDPEHA 478
Cdd:PRK12820 416 AIVLSALGQLRLHLADRLGLIPEGVFHPLWITDFPLFEATDDGGV----------TSSHHPFTAP-----DREDFDPGDI 480
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 479 M------SDSYDIVCNGNEMGGGSVRIHRDDIQDRVLNVLGIDKAEADEKFGFLLEAFKYGAPPHAGIALGWDRTAAILA 552
Cdd:PRK12820 481 EelldlrSRAYDLVVNGEELGGGSIRINDKDIQLRIFAALGLSEEDIEDKFGFFLRAFDFAAPPHGGIALGLDRVVSMIL 560
                        570       580       590
                 ....*....|....*....|....*....|....*...
gi 490236703 553 GASSIRDVIAFPKAGGGRDPLTGAPAPISDEQRAETGV 590
Cdd:PRK12820 561 QTPSIREVIAFPKNRSAACPLTGAPSEVAQEQLAELGL 598
AspRS_core cd00777
Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its ...
147-565 3.57e-151

Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.


Pssm-ID: 238400 [Multi-domain]  Cd Length: 280  Bit Score: 436.24  E-value: 3.57e-151
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 147 LKLRSNMAKAARHALEDMDFTEVETPTFIKSTPEGARDFVVPARLVPGSWYALPQSPQLLKQLLMVSGVERYYQLARCYR 226
Cdd:cd00777    1 LRLRSRVIKAIRNFLDEQGFVEIETPILTKSTPEGARDFLVPSRLHPGKFYALPQSPQLFKQLLMVSGFDRYFQIARCFR 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 227 DEDFRADRQPEFTQLDMEMSFASQEDVMAMAERVIAAIWKEA-GHEITLPLPRITWQEAMDKYGsdkpdlrfgnplielt 305
Cdd:cd00777   81 DEDLRADRQPEFTQIDIEMSFVDQEDIMSLIEGLLKYVFKEVlGVELTTPFPRMTYAEAMERYG---------------- 144
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 306 dffkntpfrvfqasyvgavlfkggaetprrqfdawqdwakqrgakglayvvfgedgelkgpvaknlseeeraglkeavga 385
Cdd:cd00777      --------------------------------------------------------------------------------
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 386 edgdavffaagsressqlllgavrvelasragllhpdeFAFTWVVDFPLFKRTDDpddddvavgHSKWTSMHHPFTMPSA 465
Cdd:cd00777  145 --------------------------------------FKFLWIVDFPLFEWDEE---------EGRLVSAHHPFTAPKE 177
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 466 DWIDKFDKDPEHAMSDSYDIVCNGNEMGGGSVRIHRDDIQDRVLNVLGIDKAEADEKFGFLLEAFKYGAPPHAGIALGWD 545
Cdd:cd00777  178 EDLDLLEKDPEDARAQAYDLVLNGVELGGGSIRIHDPDIQEKVFEILGLSEEEAEEKFGFLLEAFKYGAPPHGGIALGLD 257
                        410       420
                 ....*....|....*....|
gi 490236703 546 RTAAILAGASSIRDVIAFPK 565
Cdd:cd00777  258 RLVMLLTGSESIRDVIAFPK 277
tRNA-synt_2 pfam00152
tRNA synthetases class II (D, K and N);
126-565 2.43e-132

tRNA synthetases class II (D, K and N);


Pssm-ID: 425487 [Multi-domain]  Cd Length: 318  Bit Score: 389.62  E-value: 2.43e-132
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  126 SEDVRLKYRYLDLRRPSMQRNLKLRSNMAKAARHALEDMDFTEVETPTFIKS-TPEGARDFVVPARLVpGSWYALPQSPQ 204
Cdd:pfam00152   1 DEETRLKYRYLDLRRPKMQANLKLRSKIIKAIRNFLDENGFLEVETPILTKSaTPEGARDFLVPSRAL-GKFYALPQSPQ 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  205 LLKQLLMVSGVERYYQLARCYRDEDFRADRQPEFTQLDMEMSFASQEDVMAMAERVIAAIWKEAGH-----------EIT 273
Cdd:pfam00152  80 LYKQLLMVAGFDRVFQIARCFRDEDLRTDRQPEFTQLDLEMSFVDYEDVMDLTEELIKEIFKEVEGiakeleggtllDLK 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  274 LPLPRITWQEAMDK----------YGSDKPDLRFGNPLIeltdffkntpfrvfqasyvgavlfkggaetprrqfdawqdw 343
Cdd:pfam00152 160 KPFPRITYAEAIEKlngkdveelgYGSDKPDLRFLLELV----------------------------------------- 198
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  344 akqrgakglayvvfgedgelkgpvaknlseeeraglkeavgaedgdavffaagsressqlllgavrvelasraglLHPDE 423
Cdd:pfam00152 199 ---------------------------------------------------------------------------IDKNK 203
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  424 FAFTWVVDFPlfkrtddpddddvavghskwtSMHHPFTMPSADWIDkfdkdpehAMSDSYDIVCNGNEMGGGSVRIHRDD 503
Cdd:pfam00152 204 FNPLWVTDFP---------------------AEHHPFTMPKDEDDP--------ALAEAFDLVLNGVEIGGGSIRIHDPE 254
                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490236703  504 IQDRVLNVLGIDKAEADEKFGFLLEAFKYGAPPHAGIALGWDRTAAILAGASSIRDVIAFPK 565
Cdd:pfam00152 255 LQEERFEEQGLDPEEAEEKFGFYLDALKYGAPPHGGLGIGLDRLVMLLTGLESIREVIAFPK 316
aspC PRK05159
aspartyl-tRNA synthetase; Provisional
6-572 3.59e-84

aspartyl-tRNA synthetase; Provisional


Pssm-ID: 235354 [Multi-domain]  Cd Length: 437  Bit Score: 269.75  E-value: 3.59e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703   6 YRTHHAVEVTEELVGQKVTIAGWVDRRRDHGGVAFVDVRDNTGLVQVVIYDE------ETARPLRSEFVVQVTGEVRlrp 79
Cdd:PRK05159   2 MKRHLTSELTPELDGEEVTLAGWVHEIRDLGGIAFLILRDRSGIIQVVVKKKvdeelfETIKKLKRESVVSVTGTVK--- 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  80 dgnENDHlATGKIEIVAQTVTILAKSDA-LPFQVStaleneseNKLPSE-DVRLKYRYLDLRRPSMQRNLKLRSNMAKAA 157
Cdd:PRK05159  79 ---ANPK-APGGVEVIPEEIEVLNKAEEpLPLDIS--------GKVLAElDTRLDNRFLDLRRPRVRAIFKIRSEVLRAF 146
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 158 RHALEDMDFTEVETPTFIKSTPEGArdfvvpARLVPGSWYA----LPQSPQLLKQLLMVSGVERYYQLARCYRDEDFRAD 233
Cdd:PRK05159 147 REFLYENGFTEIFTPKIVASGTEGG------AELFPIDYFEkeayLAQSPQLYKQMMVGAGFERVFEIGPVFRAEEHNTS 220
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 234 RQ-PEFTQLDMEMSFA-SQEDVMAMAERVIAAIWKEAgheitlplpRITWQEAMDKYGSDKPDLrfgnplieltdffkNT 311
Cdd:PRK05159 221 RHlNEYTSIDVEMGFIdDHEDVMDLLENLLRYMYEDV---------AENCEKELELLGIELPVP--------------ET 277
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 312 PFrvfqasyvgavlfkggaetPRRQFDAWQDWAKQRGAKglayVVFGEDgelkgpvaknLS-EEERAgLKEAVGAEDGDA 390
Cdd:PRK05159 278 PI-------------------PRITYDEAIEILKSKGNE----ISWGDD----------LDtEGERL-LGEYVKEEYGSD 323
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 391 VFFaagsressqlllgavrvelasragllhpdefaftwVVDFPLFKRtddpddddvavghskwtsmhhPF-TMPsadwid 469
Cdd:PRK05159 324 FYF-----------------------------------ITDYPSEKR---------------------PFyTMP------ 341
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 470 kFDKDPEhaMSDSYDIVCNGNEMGGGSVRIHRDD-----IQDRVLNVlgidkaeadEKFGFLLEAFKYGAPPHAGIALGW 544
Cdd:PRK05159 342 -DEDDPE--ISKSFDLLFRGLEITSGGQRIHRYDmlvesIKEKGLNP---------ESFEFYLEAFKYGMPPHGGFGLGL 409
                        570       580
                 ....*....|....*....|....*...
gi 490236703 545 DRTAAILAGASSIRDVIAFPkagggRDP 572
Cdd:PRK05159 410 ERLTMKLLGLENIREAVLFP-----RDR 432
AsnS COG0017
Aspartyl/asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; ...
7-572 1.46e-69

Aspartyl/asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Aspartyl/asparaginyl-tRNA synthetase is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases


Pssm-ID: 439788 [Multi-domain]  Cd Length: 430  Bit Score: 231.09  E-value: 1.46e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703   7 RTHHAVEVTEELVGQKVTIAGWVDRRRDHGGVAFVDVRDNTGLVQVVIYDE-----ETARPLRSEFVVQVTGEVRLRPDg 81
Cdd:COG0017    1 KRTYIKDLLPEHVGQEVTVAGWVRTKRDSGGISFLILRDGSGFIQVVVKKDklenfEEAKKLTTESSVEVTGTVVESPR- 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  82 nendhlATGKIEIVAQTVTILAKSDA-LPFQVSTAlenesenklpSEDVRLKYRYLDLRRPSMQRNLKLRSNMAKAARHA 160
Cdd:COG0017   80 ------APQGVELQAEEIEVLGEADEpYPLQPKRH----------SLEFLLDNRHLRLRTNRFGAIFRIRSELARAIREF 143
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 161 LEDMDFTEVETPTFIKSTPEGARD-FVV-----PArlvpgswYaLPQSPQLLKQlLMVSGVERYYQLARCYRDEDFRADR 234
Cdd:COG0017  144 FQERGFVEVHTPIITASATEGGGElFPVdyfgkEA-------Y-LTQSGQLYKE-ALAMALEKVYTFGPTFRAEKSNTRR 214
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 235 Q-PEFTQLDMEMSFASQEDVMAMAERVIAAIWKeagheitlplpritwqEAMDKYgsdKPDLRFGNPLIELTDFFKNTPF 313
Cdd:COG0017  215 HlAEFWMIEPEMAFADLEDVMDLAEEMLKYIIK----------------YVLENC---PEELEFLGRDVERLEKVPESPF 275
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 314 rvfqasyvgavlfkggaetPRRQFDAWQDWAKQRGAKglayVVFGEDgelkgpvaknL-SEEERAgLKEAVGaedGDAVF 392
Cdd:COG0017  276 -------------------PRITYTEAIEILKKSGEK----VEWGDD----------LgTEHERY-LGEEFF---KKPVF 318
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 393 faagsressqlllgavrvelasragllhpdefaftwVVDFPLFKRtddpddddvavghskwtsmhhPF-TMPSADwidkf 471
Cdd:COG0017  319 ------------------------------------VTDYPKEIK---------------------AFyMKPNPD----- 336
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 472 dkDPEhaMSDSYDIVCNG-NEMGGGSVRIHRDDIQDRVLNVLGIDKaeadEKFGFLLEAFKYGAPPHAGIALGWDRTAAI 550
Cdd:COG0017  337 --DPK--TVAAFDLLAPGiGEIIGGSQREHRYDVLVERIKEKGLDP----EDYEWYLDLRRYGSVPHAGFGLGLERLVMW 408
                        570       580
                 ....*....|....*....|..
gi 490236703 551 LAGASSIRDVIAFPkagggRDP 572
Cdd:COG0017  409 LTGLENIREVIPFP-----RDP 425
Asp_Lys_Asn_RS_core cd00669
Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of ...
147-565 4.76e-69

Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.


Pssm-ID: 238358 [Multi-domain]  Cd Length: 269  Bit Score: 224.66  E-value: 4.76e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 147 LKLRSNMAKAARHALEDMDFTEVETPTFIKSTP-EGARDFVVPARlVPGSWYALPQSPQLLKQLLMVSGVERYYQLARCY 225
Cdd:cd00669    1 FKVRSKIIKAIRDFMDDRGFLEVETPMLQKITGgAGARPFLVKYN-ALGLDYYLRISPQLFKKRLMVGGLDRVFEINRNF 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 226 RDEDFRADRQPEFTQLDMEMSFASQEDVMAMAERVIAAIWKEA-GH----------EITLPLPRITWQEAMDKYGsdkpd 294
Cdd:cd00669   80 RNEDLRARHQPEFTMMDLEMAFADYEDVIELTERLVRHLAREVlGVtavtygfeleDFGLPFPRLTYREALERYG----- 154
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 295 lrfgnplieltdffkntpfrvfqasyvgavlfkggaetprrqfdawqdwakqrgakglayvvfgedgelkgpvaknlsee 374
Cdd:cd00669      --------------------------------------------------------------------------------
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 375 eraglkeavgaedgdavffaagsressqlllgavrvelasragllhpdefAFTWVVDFPLFkrtddpddddvavghskwt 454
Cdd:cd00669  155 --------------------------------------------------QPLFLTDYPAE------------------- 165
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 455 sMHHPFTMPsadwidkFDKDPEHAmsDSYDIVCNGNEMGGGSVRIHRDDIQDRVLNVLGIDKAEADEKFGFLLEAFKYGA 534
Cdd:cd00669  166 -MHSPLASP-------HDVNPEIA--DAFDLFINGVEVGNGSSRLHDPDIQAEVFQEQGINKEAGMEYFEFYLKALEYGL 235
                        410       420       430
                 ....*....|....*....|....*....|.
gi 490236703 535 PPHAGIALGWDRTAAILAGASSIRDVIAFPK 565
Cdd:cd00669  236 PPHGGLGIGIDRLIMLMTNSPTIREVIAFPK 266
EcAspRS_like_N cd04317
EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli ...
7-143 2.05e-63

EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS. These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with mitochondrial protein synthesis. Human mtAspRS participates in mitochondrial biosynthesis; this enzyme been shown to charge E.coli native tRNAsp in addition to in vitro transcribed human mitochondrial tRNAsp. T. thermophilus is rare among bacteria in having both a D_AspRS and a ND_AspRS. H.pylori ND-AspRS can charge both tRNAASp and tRNAAsn, it is fractionally more efficient at aminoacylating tRNAAsp over tRNAAsn. The H.pylori genome does not contain AsnRS.


Pssm-ID: 239812 [Multi-domain]  Cd Length: 135  Bit Score: 204.68  E-value: 2.05e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703   7 RTHHAVEVTEELVGQKVTIAGWVDRRRDHGGVAFVDVRDNTGLVQVVIYDE-----ETARPLRSEFVVQVTGEVRLRPDG 81
Cdd:cd04317    1 RTHYCGELRESHVGQEVTLCGWVQRRRDHGGLIFIDLRDRYGIVQVVFDPEeapefELAEKLRNESVIQVTGKVRARPEG 80
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490236703  82 NENDHLATGKIEIVAQTVTILAKSDALPFQVSTALENesenklpSEDVRLKYRYLDLRRPSM 143
Cdd:cd04317   81 TVNPKLPTGEIEVVASELEVLNKAKTLPFEIDDDVNV-------SEELRLKYRYLDLRRPKM 135
AsxRS_core cd00776
Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA ...
126-572 4.60e-37

Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.


Pssm-ID: 238399 [Multi-domain]  Cd Length: 322  Bit Score: 140.39  E-value: 4.60e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 126 SEDVRLKYRYLDLRRPSMQRNLKLRSNMAKAARHALEDMDFTEVETPTFIKSTPEGardfvvPARLVPGSWYA----LPQ 201
Cdd:cd00776    3 NLETLLDNRHLDLRTPKVQAIFRIRSEVLRAFREFLRENGFTEVHTPKITSTDTEG------GAELFKVSYFGkpayLAQ 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 202 SPQLLKQlLMVSGVERYYQLARCYRDEDFRADRQ-PEFTQLDMEMSFA-SQEDVMAMAERVIAAIWK----EAGHEItlp 275
Cdd:cd00776   77 SPQLYKE-MLIAALERVYEIGPVFRAEKSNTRRHlSEFWMLEAEMAFIeDYNEVMDLIEELIKYIFKrvleRCAKEL--- 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 276 lpritwqEAMDKYGSDkpdlrfgnplieltDFFKNTPFrvfqasyvgavlfkggaetPRRQFDAWQDWAKQRGAKglAYV 355
Cdd:cd00776  153 -------ELVNQLNRE--------------LLKPLEPF-------------------PRITYDEAIELLREKGVE--EEV 190
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 356 VFGEDgelkgpvaknLSEEEraglkeavgaedgdavffaagsressQLLLGAvrvelasraglLHPDEFAFtwVVDFPLF 435
Cdd:cd00776  191 KWGED----------LSTEH--------------------------ERLLGE-----------IVKGDPVF--VTDYPKE 221
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 436 KRtddpddddvavghskwtsmhhPF-TMPSADwidkfdkDPEhaMSDSYD-IVCNGNEMGGGSVRIHRDDIQDRVLNVLG 513
Cdd:cd00776  222 IK---------------------PFyMKPDDD-------NPE--TVESFDlLMPGVGEIVGGSQRIHDYDELEERIKEHG 271
                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 490236703 514 IDKaeadEKFGFLLEAFKYGAPPHAGIALGWDRTAAILAGASSIRDVIAFPkagggRDP 572
Cdd:cd00776  272 LDP----ESFEWYLDLRKYGMPPHGGFGLGLERLVMWLLGLDNIREAILFP-----RDP 321
PLN02850 PLN02850
aspartate-tRNA ligase
13-577 2.91e-35

aspartate-tRNA ligase


Pssm-ID: 215456 [Multi-domain]  Cd Length: 530  Bit Score: 139.46  E-value: 2.91e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  13 EVTEELVGQKVTIAGWVDRRRDHGGVAFVDVRDNTGLVQVVIYDEET---------ARPLRSEFVVQVTGEVRLRPDGNE 83
Cdd:PLN02850  74 DLGEELAGSEVLIRGRVHTIRGKGKSAFLVLRQSGFTVQCVVFVSEVtvskgmvkyAKQLSRESVVDVEGVVSVPKKPVK 153
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  84 NdhlATGKIEIVAQTVTILAKSDA-LPFQVSTALENESENKLPSE----------DVRLKYRYLDLRRPSMQRNLKLRSN 152
Cdd:PLN02850 154 G---TTQQVEIQVRKIYCVSKALAtLPFNVEDAARSESEIEKALQtgeqlvrvgqDTRLNNRVLDLRTPANQAIFRIQSQ 230
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 153 MAKAARHALEDMDFTEVETPTFIKSTPEGARD------FVVPArlvpgswyALPQSPQLLKQLLMVSGVERYYQLARCYR 226
Cdd:PLN02850 231 VCNLFREFLLSKGFVEIHTPKLIAGASEGGSAvfrldyKGQPA--------CLAQSPQLHKQMAICGDFRRVFEIGPVFR 302
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 227 DEDFRADRQ-PEFTQLDMEMSFASQED-VMAMAERVIAAIWKEAGHEITLPLPRITWQeamdkYGSDkpDLRFGNPLIEL 304
Cdd:PLN02850 303 AEDSFTHRHlCEFTGLDLEMEIKEHYSeVLDVVDELFVAIFDGLNERCKKELEAIREQ-----YPFE--PLKYLPKTLRL 375
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 305 TdffkntpfrvfqasyvgavlFKGGAETPRrqfdawqdwakqrgakglayvvfgEDGELKGPVAKNLSEEERA-G--LKE 381
Cdd:PLN02850 376 T--------------------FAEGIQMLK------------------------EAGVEVDPLGDLNTESERKlGqlVKE 411
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 382 AVGAEdgdavFFaagsressqlllgavrvelasragLLHpdefaftwvvDFPLFKRtddpddddvavghskwtsmhhPF- 460
Cdd:PLN02850 412 KYGTD-----FY------------------------ILH----------RYPLAVR---------------------PFy 431
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 461 TMPSADwidkfdkDPehAMSDSYDIVCNGNEMGGGSVRIHRDDIQDRVLNVLGIDKaeadEKFGFLLEAFKYGAPPHAGI 540
Cdd:PLN02850 432 TMPCPD-------DP--KYSNSFDVFIRGEEIISGAQRVHDPELLEKRAEECGIDV----KTISTYIDSFRYGAPPHGGF 498
                        570       580       590
                 ....*....|....*....|....*....|....*..
gi 490236703 541 ALGWDRTAAILAGASSIRDVIAFPkagggRDPLTGAP 577
Cdd:PLN02850 499 GVGLERVVMLFCGLNNIRKTSLFP-----RDPQRLAP 530
LysU COG1190
Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]; Lysyl-tRNA ...
7-564 4.23e-28

Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]; Lysyl-tRNA synthetase (class II) is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases


Pssm-ID: 440803 [Multi-domain]  Cd Length: 495  Bit Score: 117.83  E-value: 4.23e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703   7 RTHHAVEV--------TEELVGQKVTIAGWVDRRRDHGGVAFVDVRDNTGLVQVVIYDEETARPLRSEF-------VVQV 71
Cdd:COG1190   35 RTHTAAEIrekydeleAEEETGDEVSVAGRIMAKRDMGKASFADLQDGSGRIQLYLRRDELGEEAYELFklldlgdIVGV 114
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  72 TGEV-RLRpdgnendhlaTGKIEIVAQTVTILAKSdALPfqvstalenesenkLPS-----EDVRLKYR--YLDL-RRPS 142
Cdd:COG1190  115 EGTVfRTK----------TGELSVKVEELTLLSKS-LRP--------------LPEkfhglTDPETRYRqrYVDLiVNPE 169
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 143 MQRNLKLRSNMAKAARHALEDMDFTEVETPTfIKSTPEGA--RDFVVparlvpgswY--ALPQ------SPQL-LKQLLm 211
Cdd:COG1190  170 VRETFRKRSKIIRAIRRFLDERGFLEVETPM-LQPIAGGAaaRPFIT---------HhnALDMdlylriAPELyLKRLI- 238
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 212 VSGVERYYQLARCYRDEDfrADRQ--PEFTQLDMEMSFASQEDVMAMAERVIAAIWKEAGHEitlplPRITWQEAMdkyg 289
Cdd:COG1190  239 VGGFERVFEIGRNFRNEG--IDTThnPEFTMLELYQAYADYNDMMDLTEELIREAAEAVLGT-----TKVTYQGQE---- 307
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 290 sdkpdlrfgnplIELTdffknTPFRVfqASYVGAVLFKGGAE-TPRRQFDAWQDWAKQRGakglayvvfgedgelkgpva 368
Cdd:COG1190  308 ------------IDLS-----PPWRR--ITMVEAIKEATGIDvTPLTDDEELRALAKELG-------------------- 348
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 369 knLSEEERAGLKEAVgaedgDAVFfaagsressqlllgavrvELASRAGLLHPdefafTWVVDFPLFkrtddpddddvav 448
Cdd:COG1190  349 --IEVDPGWGRGKLI-----DELF------------------EELVEPKLIQP-----TFVTDYPVE------------- 385
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 449 ghskwTSmhhPFTMPSadwidkfDKDPEhaMSDSYDIVCNGNEMGGG-S----VRIHRDDIQDRVLnvlgiDKA----EA 519
Cdd:COG1190  386 -----VS---PLAKRH-------RDDPG--LTERFELFIAGREIANAfSelndPIDQRERFEEQLE-----LKAagddEA 443
                        570       580       590       600
                 ....*....|....*....|....*....|....*....|....*...
gi 490236703 520 ---DEKFgflLEAFKYGAPPHAGIALGWDRTAAILAGASSIRDVIAFP 564
Cdd:COG1190  444 mpmDEDF---LRALEYGMPPTGGLGIGIDRLVMLLTDSPSIRDVILFP 488
Asp_Lys_Asn_RS_N cd04100
Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA ...
22-104 5.67e-28

Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases (AspRS, AsnRS, and LysRS). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Included in this group are archeal and archeal-like AspRSs which are non-discriminating and can charge both tRNAAsp and tRNAAsn. E. coli cells have two isoforms of LysRSs (LysS and LysU) encoded by two distinct genes, which are differentially regulated. The cytoplasmic and the mitochondrial isoforms of human LysRS are encoded by a single gene. Yeast cytoplasmic and mitochondrial LysRSs participate in mitochondrial import of cytoplasmic tRNAlysCUU. In addition to their housekeeping role, human LysRS may function as a signaling molecule that activates immune cells. Tomato LysRS may participate in a process possibly connected to conditions of oxidative-stress conditions or heavy metal uptake. It is known that human tRNAlys and LysRS are specifically packaged into HIV-1 suggesting a role for LysRS in tRNA packaging. AsnRS is immunodominant antigen of the filarial nematode Brugia malayai and is of interest as a target for anti-parasitic drug design. Human AsnRS has been shown to be a pro-inflammatory chemokine which interacts with CCR3 chemokine receptors on T cells, immature dendritic cells and macrophages.


Pssm-ID: 239766 [Multi-domain]  Cd Length: 85  Bit Score: 107.27  E-value: 5.67e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  22 KVTIAGWVDRRRDHGGVAFVDVRDNTGLVQVVIYDE------ETARPLRSEFVVQVTGEVRLRPDGNendhLATGKIEIV 95
Cdd:cd04100    1 EVTLAGWVHSRRDHGGLIFIDLRDGSGIVQVVVNKEelgeffEEAEKLRTESVVGVTGTVVKRPEGN----LATGEIELQ 76

                 ....*....
gi 490236703  96 AQTVTILAK 104
Cdd:cd04100   77 AEELEVLSK 85
PTZ00401 PTZ00401
aspartyl-tRNA synthetase; Provisional
1-577 3.50e-25

aspartyl-tRNA synthetase; Provisional


Pssm-ID: 173592 [Multi-domain]  Cd Length: 550  Bit Score: 109.70  E-value: 3.50e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703   1 MSQTAYRTHHAVEVT----EELVGQKVTIAGWVDRRRDHGGVAFVDVRDNTGLVQVVIYDEETARPLRSEFVVQVTGEVR 76
Cdd:PTZ00401  55 VQSTTYKSRTFIPVAvlskPELVDKTVLIRARVSTTRKKGKMAFMVLRDGSDSVQAMAAVEGDVPKEMIDFIGQIPTESI 134
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  77 LRPDGN----ENDHLATGKIEIVAQTVTILAKSDAL---PFQVSTALENESENKLPSE-DVRLKYRYLDLRRPSMQRNLK 148
Cdd:PTZ00401 135 VDVEATvckvEQPITSTSHSDIELKVKKIHTVTESLrtlPFTLEDASRKESDEGAKVNfDTRLNSRWMDLRTPASGAIFR 214
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 149 LRSNMAKAARHALEDMDFTEVETPTFIKSTPEGARDfVVPARLVPGSWYaLPQSPQLLKQLLMVSGVERYYQLARCYRDE 228
Cdd:PTZ00401 215 LQSRVCQYFRQFLIDSDFCEIHSPKIINAPSEGGAN-VFKLEYFNRFAY-LAQSPQLYKQMVLQGDVPRVFEVGPVFRSE 292
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 229 DFRADRQ-PEFTQLDMEMSFASQ-EDVMAMAERVIAAIWKE-AGHEITL-------PLPRITWQ---EAMDKYG----SD 291
Cdd:PTZ00401 293 NSNTHRHlTEFVGLDVEMRINEHyYEVLDLAESLFNYIFERlATHTKELkavcqqyPFEPLVWKltpERMKELGvgviSE 372
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 292 KpdlrfgnplIELTDFFK----NTPFRVFQASYVGAVlfkggaetprrqfdawqdwakqrgakglayvvfgedgELKGPV 367
Cdd:PTZ00401 373 G---------VEPTDKYQarvhNMDSRMLRINYMHCI-------------------------------------ELLNTV 406
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 368 AknlseEERAGLKEAVGAedgdavffaagsreSSQLLLGAVRVElasRAGllhpdefaftwvVDFPLFKRtddpddddva 447
Cdd:PTZ00401 407 L-----EEKMAPTDDINT--------------TNEKLLGKLVKE---RYG------------TDFFISDR---------- 442
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 448 vghskWTSMHHPF-TMPSADwidkfdkdpEHAMSDSYDIVCNGNEMGGGSVRIHRDDIQDRVLNVLGIDKAEADEkfgfL 526
Cdd:PTZ00401 443 -----FPSSARPFyTMECKD---------DERFTNSYDMFIRGEEISSGAQRIHDPDLLLARAKMLNVDLTPIKE----Y 504
                        570       580       590       600       610
                 ....*....|....*....|....*....|....*....|....*....|.
gi 490236703 527 LEAFKYGAPPHAGIALGWDRTAAILAGASSIRDVIAFPkagggRDPLTGAP 577
Cdd:PTZ00401 505 VDSFRLGAWPHGGFGVGLERVVMLYLGLSNVRLASLFP-----RDPQRTTP 550
lysS PRK00484
lysyl-tRNA synthetase; Reviewed
7-564 1.11e-24

lysyl-tRNA synthetase; Reviewed


Pssm-ID: 234778 [Multi-domain]  Cd Length: 491  Bit Score: 107.48  E-value: 1.11e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703   7 RTHHAVEV--------TEELV--GQKVTIAGWVDRRRDHGGVAFVDVRDNTGLVQVVIYDEETARPLRSEF-------VV 69
Cdd:PRK00484  31 RTHTAAELrakyddkeKEELEelEIEVSVAGRVMLKRVMGKASFATLQDGSGRIQLYVSKDDVGEEALEAFkkldlgdII 110
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  70 QVTGEV-RLRpdgnendhlaTGKIEIVAQTVTILAKS-DALPfqvstalenESENKLPSEDVRLKYRYLDL-RRPSMQRN 146
Cdd:PRK00484 111 GVEGTLfKTK----------TGELSVKATELTLLTKSlRPLP---------DKFHGLTDVETRYRQRYVDLiVNPESRET 171
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 147 LKLRSNMAKAARHALEDMDFTEVETPTfIKSTPEG--ARDFV-------VParlvpgsWYaLPQSPQL-LKQLLmVSGVE 216
Cdd:PRK00484 172 FRKRSKIISAIRRFLDNRGFLEVETPM-LQPIAGGaaARPFIthhnaldID-------LY-LRIAPELyLKRLI-VGGFE 241
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 217 RYYQLARCYRDEDfrADRQ--PEFTQLDMEMSFASQEDVMAMAERVIAAIwkeagheitlplpritwqeAMDKYGSDKpd 294
Cdd:PRK00484 242 RVYEIGRNFRNEG--IDTRhnPEFTMLEFYQAYADYNDMMDLTEELIRHL-------------------AQAVLGTTK-- 298
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 295 LRFGNPLIELTdffknTPFRvfQASYVGAVLFKGGAETPRRQFDAWQDWAKQRGAKglayvvfgedgelkgpvaknlsEE 374
Cdd:PRK00484 299 VTYQGTEIDFG-----PPFK--RLTMVDAIKEYTGVDFDDMTDEEARALAKELGIE----------------------VE 349
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 375 ERAGLKEAVgaedgDAVFfaagsressqlllgavrvELASRAGLLHPdefafTWVVDFPlfkrtddpddddVAVghskwt 454
Cdd:PRK00484 350 KSWGLGKLI-----NELF------------------EEFVEPKLIQP-----TFITDYP------------VEI------ 383
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 455 SmhhPFTMPSadwidkfDKDPEhaMSDSYDIVCNGNEMGGG-SVRIhrDDIQDRVLNVLGIDKAEA--------DEKFgf 525
Cdd:PRK00484 384 S---PLAKRH-------REDPG--LTERFELFIGGREIANAfSELN--DPIDQRERFEAQVEAKEAgddeamfmDEDF-- 447
                        570       580       590
                 ....*....|....*....|....*....|....*....
gi 490236703 526 lLEAFKYGAPPHAGIALGWDRTAAILAGASSIRDVIAFP 564
Cdd:PRK00484 448 -LRALEYGMPPTGGLGIGIDRLVMLLTDSPSIRDVILFP 485
asnC PRK03932
asparaginyl-tRNA synthetase; Validated
15-564 2.15e-24

asparaginyl-tRNA synthetase; Validated


Pssm-ID: 235176 [Multi-domain]  Cd Length: 450  Bit Score: 106.35  E-value: 2.15e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  15 TEELVGQKVTIAGWVDRRRDHGGVAFVDVRDNTGLVQ-VVIYDE-----ETARPLRSEFVVQVTGEVRLRPDgnendhlA 88
Cdd:PRK03932  11 KGKYVGQEVTVRGWVRTKRDSGKIAFLQLRDGSCFKQlQVVKDNgeeyfEEIKKLTTGSSVIVTGTVVESPR-------A 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  89 TGKIEIVAQTVTILAKSDA-LPFQvstaleneseNKLPSEDVRLKYRYLDLRRPSMQRNLKLRSNMAKAARHALEDMDFT 167
Cdd:PRK03932  84 GQGYELQATKIEVIGEDPEdYPIQ----------KKRHSIEFLREIAHLRPRTNKFGAVMRIRNTLAQAIHEFFNENGFV 153
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 168 EVETPTFIKSTPEGARD-FVVPARLVPGSW-------YaLPQSPQLlkQL-LMVSGVERYYQLARCYRDEDFRADRQ-PE 237
Cdd:PRK03932 154 WVDTPIITASDCEGAGElFRVTTLDLDFSKdffgkeaY-LTVSGQL--YAeAYAMALGKVYTFGPTFRAENSNTRRHlAE 230
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 238 FTQLDMEMSFASQEDVMAMAER----VIAAIWKEAGHEItlplpritwqEAMDKygsdkpdlRFGNPLIELTDFFKNTPF 313
Cdd:PRK03932 231 FWMIEPEMAFADLEDNMDLAEEmlkyVVKYVLENCPDDL----------EFLNR--------RVDKGDIERLENFIESPF 292
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 314 -RVfqaSYVGAVlfkggaetprrqfdawqDWAKQRGAKGLAYVVFGEDgeLKgpvaknlSEEERAGLKEAVGAedgdAVF 392
Cdd:PRK03932 293 pRI---TYTEAI-----------------EILQKSGKKFEFPVEWGDD--LG-------SEHERYLAEEHFKK----PVF 339
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 393 faagsressqlllgavrvelasragllhpdefaftwVVDFPL-FKrtddpddddvavghskwtsmhhPFTMPsadwidkf 471
Cdd:PRK03932 340 ------------------------------------VTNYPKdIK----------------------AFYMR-------- 353
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 472 dKDPEH----AMsdsyDIVCNG-NEMGGGSVRIHRDDIQDRVLNVLGIDKaeadEKFGFLLEAFKYGAPPHAGIALGWDR 546
Cdd:PRK03932 354 -LNPDGktvaAM----DLLAPGiGEIIGGSQREERLDVLEARIKELGLNK----EDYWWYLDLRRYGSVPHSGFGLGFER 424
                        570
                 ....*....|....*...
gi 490236703 547 TAAILAGASSIRDVIAFP 564
Cdd:PRK03932 425 LVAYITGLDNIRDVIPFP 442
lysS PRK02983
bifunctional lysylphosphatidylglycerol synthetase/lysine--tRNA ligase LysX;
7-264 2.06e-23

bifunctional lysylphosphatidylglycerol synthetase/lysine--tRNA ligase LysX;


Pssm-ID: 235095 [Multi-domain]  Cd Length: 1094  Bit Score: 105.43  E-value: 2.06e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703    7 RTHHAVEVTEELVGQKVTIAGWVDRRRDHGGVAFVDVRDNTGLVQVVIYDEETARPLRSEF--------VVQVTGEV-RL 77
Cdd:PRK02983  638 PTHTVAEALDAPTGEEVSVSGRVLRIRDYGGVLFADLRDWSGELQVLLDASRLEQGSLADFraavdlgdLVEVTGTMgTS 717
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703   78 RpdgnendhlaTGKIEIVAQTVTILAKS-DALPFQVSTALENESenklpsedvRLKYRYLDLR-RPSMQRNLKLRSNMAK 155
Cdd:PRK02983  718 R----------NGTLSLLVTSWRLAGKClRPLPDKWKGLTDPEA---------RVRQRYLDLAvNPEARDLLRARSAVVR 778
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  156 AARHALEDMDFTEVETPtfIKSTPEG---ARDFVVPARLVPGSWYaLPQSPQL-LKQLlMVSGVERYYQLARCYRDEDFR 231
Cdd:PRK02983  779 AVRETLVARGFLEVETP--ILQQVHGganARPFVTHINAYDMDLY-LRIAPELyLKRL-CVGGVERVFELGRNFRNEGVD 854
                         250       260       270
                  ....*....|....*....|....*....|....*
gi 490236703  232 ADRQPEFTQLDMEMSFASQEDVMAMAERVI--AAI 264
Cdd:PRK02983  855 ATHNPEFTLLEAYQAHADYDTMRDLTRELIqnAAQ 889
ND_PkAspRS_like_N cd04316
ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the ...
9-113 1.41e-21

ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes.


Pssm-ID: 239811 [Multi-domain]  Cd Length: 108  Bit Score: 90.07  E-value: 1.41e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703   9 HHAVEVTEELVGQKVTIAGWVDRRRDHGGVAFVDVRDNTGLVQVVIYDE-------ETARPLRSEFVVQVTGEVRLRPDg 81
Cdd:cd04316    1 HYSAEITPELDGEEVTVAGWVHEIRDLGGIKFVILRDREGIVQVTAPKKkvdkelfKTVRKLSRESVISVTGTVKAEPK- 79
                         90       100       110
                 ....*....|....*....|....*....|...
gi 490236703  82 nendhlATGKIEIVAQTVTILAKSDA-LPFQVS 113
Cdd:cd04316   80 ------APNGVEIIPEEIEVLSEAKTpLPLDPT 106
PTZ00385 PTZ00385
lysyl-tRNA synthetase; Provisional
23-564 7.09e-20

lysyl-tRNA synthetase; Provisional


Pssm-ID: 185588 [Multi-domain]  Cd Length: 659  Bit Score: 93.56  E-value: 7.09e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  23 VTIAGWVDRRRDHGGVAFVDVRDNTGLVQVVI-----YDEETARPLRSEFVVqvtGEVrLRPDGNENdHLATGKIEIVAQ 97
Cdd:PTZ00385 110 VRVAGRVTSVRDIGKIIFVTIRSNGNELQVVGqvgehFTREDLKKLKVSLRV---GDI-IGADGVPC-RMQRGELSVAAS 184
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  98 TVTILAKSDALPFQVSTALENESEnkLPSEDVRLKYRYLDL-RRPSMQRNLKLRSNMAKAARHALEDMDFTEVETPTF-I 175
Cdd:PTZ00385 185 RMLILSPYVCTDQVVCPNLRGFTV--LQDNDVKYRYRFTDMmTNPCVIETIKKRHVMLQALRDYFNERNFVEVETPVLhT 262
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 176 KSTPEGARDFVVPARLVPGSWYaLPQSPQLLKQLLMVSGVERYYQLARCYRDEDFRADRQPEFTQLDMEMSFASQEDVMA 255
Cdd:PTZ00385 263 VASGANAKSFVTHHNANAMDLF-LRVAPELHLKQCIVGGMERIYEIGKVFRNEDADRSHNPEFTSCEFYAAYHTYEDLMP 341
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 256 MAERVIAAIWKEAGHEITLPLpritwqeamdkygsdKPDLRFGNPL-IELtdffkNTPFRvfQASYVGAVLFKGGAETPR 334
Cdd:PTZ00385 342 MTEDIFRQLAMRVNGTTVVQI---------------YPENAHGNPVtVDL-----GKPFR--RVSVYDEIQRMSGVEFPP 399
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 335 RQfdawqdwaKQRGAKGLAY---VVFGEDGELKgPVaknlseeeraglkeavgaedgdavffaagsRESSQLLLGAVRVE 411
Cdd:PTZ00385 400 PN--------ELNTPKGIAYmsvVMLRYNIPLP-PV------------------------------RTAAKMFEKLIDFF 440
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 412 LASRagLLHPdefafTWVVDFPLFkrtddpdDDDVAVGHSKWTSMHHPFTMpsadwidkFDKDPEHamsdsydivCNG-N 490
Cdd:PTZ00385 441 ITDR--VVEP-----TFVMDHPLF-------MSPLAKEQVSRPGLAERFEL--------FVNGIEY---------CNAyS 489
                        490       500       510       520       530       540       550
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 490236703 491 EMGGGSVRIHRddIQDRVLNVLGIDKaEA---DEKFgflLEAFKYGAPPHAGIALGWDRTAAILAGASSIRDVIAFP 564
Cdd:PTZ00385 490 ELNDPHEQYHR--FQQQLVDRQGGDE-EAmplDETF---LKSLQVGLPPTAGWGMGIDRALMLLTNSSNIRDGIIFP 560
PLN02502 PLN02502
lysyl-tRNA synthetase
9-280 1.92e-19

lysyl-tRNA synthetase


Pssm-ID: 215278 [Multi-domain]  Cd Length: 553  Bit Score: 91.98  E-value: 1.92e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703   9 HHAVEVTEELVGQKVTIAGWVDRRRDHGGVAFVDVRDNTGLVQvVIYDEETARPLRSEF-----------VVQVTGEVRl 77
Cdd:PLN02502  97 YGSLENGEELEDVSVSVAGRIMAKRAFGKLAFYDLRDDGGKIQ-LYADKKRLDLDEEEFeklhslvdrgdIVGVTGTPG- 174
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  78 RPDgnendhlaTGKIEIVAQTVTILAKS-DALPFQVStalenesenKLPSEDVRLKYRYLDL-RRPSMQRNLKLRSNMAK 155
Cdd:PLN02502 175 KTK--------KGELSIFPTSFEVLTKClLMLPDKYH---------GLTDQETRYRQRYLDLiANPEVRDIFRTRAKIIS 237
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 156 AARHALEDMDFTEVETPTfIKSTPEG--ARDFV-----VPARLVpgswyaLPQSPQL-LKQLLmVSGVERYYQLARCYRD 227
Cdd:PLN02502 238 YIRRFLDDRGFLEVETPM-LNMIAGGaaARPFVthhndLNMDLY------LRIATELhLKRLV-VGGFERVYEIGRQFRN 309
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 490236703 228 EDFRADRQPEFTQLDMEMSFASQEDVMAMAERVIAAIWKEA---------GHEITL--PLPRIT 280
Cdd:PLN02502 310 EGISTRHNPEFTTCEFYQAYADYNDMMELTEEMVSGMVKELtgsykikyhGIEIDFtpPFRRIS 373
GAD pfam02938
GAD domain; This domain is found in some members of the GatB and aspartyl tRNA synthetases.
321-400 2.38e-18

GAD domain; This domain is found in some members of the GatB and aspartyl tRNA synthetases.


Pssm-ID: 397199 [Multi-domain]  Cd Length: 94  Bit Score: 80.39  E-value: 2.38e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  321 VGAVLFKGGAETPRRQFDAWQDWAKQRGAKGLAYVVFGEDGElKGPVAKNLSEEERAGLKEAVGAEDGDAVFFAAGSRES 400
Cdd:pfam02938  11 VKALRVPGAAGLSRKEIDELERFAKEYGAKGLAWIKVEGGGH-TGPIAKFLTEEEVEKLLEAVGAEDGDALLFVADKKKT 89
tRNA_anti-codon pfam01336
OB-fold nucleic acid binding domain; This family contains OB-fold domains that bind to nucleic ...
23-102 1.18e-16

OB-fold nucleic acid binding domain; This family contains OB-fold domains that bind to nucleic acids. The family includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl -tRNA synthetases (See pfam00152). Aminoacyl-tRNA synthetases catalyze the addition of an amino acid to the appropriate tRNA molecule EC:6.1.1.-. This family also includes part of RecG helicase involved in DNA repair. Replication factor A is a hetero-trimeric complex, that contains a subunit in this family. This domain is also found at the C-terminus of bacterial DNA polymerase III alpha chain.


Pssm-ID: 460164 [Multi-domain]  Cd Length: 75  Bit Score: 74.58  E-value: 1.18e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703   23 VTIAGWV-DRRRDHGGVAFVDVRDNTGLVQVVIYDEE---TARPLRSEFVVQVTGEVRLRPdgnendhlaTGKIEIVAQT 98
Cdd:pfam01336   1 VTVAGRVtSIRRSGGKLLFLTLRDGTGSIQVVVFKEEaekLAKKLKEGDVVRVTGKVKKRK---------GGELELVVEE 71

                  ....
gi 490236703   99 VTIL 102
Cdd:pfam01336  72 IELL 75
LysRS_core cd00775
Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a ...
142-564 2.06e-15

Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.


Pssm-ID: 238398 [Multi-domain]  Cd Length: 329  Bit Score: 77.63  E-value: 2.06e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 142 SMQRnLKLRSNMAKAARHALEDMDFTEVETPTfIKSTPEGA--RDFVVPARLVPGSWYaLPQSPQL-LKQLLmVSGVERY 218
Cdd:cd00775    4 VRQT-FIVRSKIISYIRKFLDDRGFLEVETPM-LQPIAGGAaaRPFITHHNALDMDLY-LRIAPELyLKRLI-VGGFERV 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 219 YQLARCYRDEDFRADRQPEFTQLDMEMSFASQEDVMAMAERVIAAIwkeagheitlplpritwqeAMDKYGSDKPDlrFG 298
Cdd:cd00775   80 YEIGRNFRNEGIDLTHNPEFTMIEFYEAYADYNDMMDLTEDLFSGL-------------------VKKINGKTKIE--YG 138
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 299 NPLIELTdffknTPFRVfqASYVGAVLFKGGAETPRRQFDAWQDWAKQRGAKGlayVVFGEDGELKGPVAKNLSEEErag 378
Cdd:cd00775  139 GKELDFT-----PPFKR--VTMVDALKEKTGIDFPELDLEQPEELAKLLAKLI---KEKIEKPRTLGKLLDKLFEEF--- 205
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 379 lkeavgaedgdavffaagsressqlllgavrVElasrAGLLHPdefafTWVVDFP-----LFKRtddpddddvavghskw 453
Cdd:cd00775  206 -------------------------------VE----PTLIQP-----TFIIDHPveispLAKR---------------- 229
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 454 tsmhHPftmpsadwidkfdKDPEhaMSDSYDIVCNGNEMGGGSVRIhrDDIQDR--------VLNVLGIDKA-EADEKFg 524
Cdd:cd00775  230 ----HR-------------SNPG--LTERFELFICGKEIANAYTEL--NDPFDQrerfeeqaKQKEAGDDEAmMMDEDF- 287
                        410       420       430       440
                 ....*....|....*....|....*....|....*....|
gi 490236703 525 flLEAFKYGAPPHAGIALGWDRTAAILAGASSIRDVIAFP 564
Cdd:cd00775  288 --VTALEYGMPPTGGLGIGIDRLVMLLTDSNSIRDVILFP 325
PRK12445 PRK12445
lysyl-tRNA synthetase; Reviewed
22-564 1.37e-13

lysyl-tRNA synthetase; Reviewed


Pssm-ID: 171504 [Multi-domain]  Cd Length: 505  Bit Score: 73.56  E-value: 1.37e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  22 KVTIAGWVDRRRDHGGVAFVDVRDNTGLVQVVIYDEETARPLRSE-FVVQVTGEVrLRPDGNENDhLATGKIEIVAQTVT 100
Cdd:PRK12445  67 EVSVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDSLPEGVYNDqFKKWDLGDI-IGARGTLFK-TQTGELSIHCTELR 144
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 101 ILAKS-DALPfqvstalenESENKLPSEDVRLKYRYLDLRRPSMQRN-LKLRSNMAKAARHALEDMDFTEVETPtFIKST 178
Cdd:PRK12445 145 LLTKAlRPLP---------DKFHGLQDQEVRYRQRYLDLIANDKSRQtFVVRSKILAAIRQFMVARGFMEVETP-MMQVI 214
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 179 PEGA--RDFVVPARLVPGSWYaLPQSPQLLKQLLMVSGVERYYQLARCYRDEDFRADRQPEFTQLDMEMSFASQEDVMAM 256
Cdd:PRK12445 215 PGGAsaRPFITHHNALDLDMY-LRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYHDLIEL 293
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 257 AERVIAAIWKEAGHEITLPlpritwqeamdkYGSDKPDlrFGNPLIELTdffkntpfrvfqasyVGAVLFKGGAETPRRQ 336
Cdd:PRK12445 294 TESLFRTLAQEVLGTTKVT------------YGEHVFD--FGKPFEKLT---------------MREAIKKYRPETDMAD 344
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 337 FDAWQdwakqrGAKGLAYVVfgedgelkgpvakNLSEEERAGLKEAVgAEDGDAVffaagsressqlllgavrvelaSRA 416
Cdd:PRK12445 345 LDNFD------AAKALAESI-------------GITVEKSWGLGRIV-TEIFDEV----------------------AEA 382
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 417 GLLHPdefafTWVVDFPlfkrtddpddddvavghskwtsmhhpftMPSADWIDKFDKDPEhaMSDSYDIVCNGNEMGGGS 496
Cdd:PRK12445 383 HLIQP-----TFITEYP----------------------------AEVSPLARRNDVNPE--ITDRFEFFIGGREIGNGF 427
                        490       500       510       520       530       540       550
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490236703 497 VRIHRDDIQDRVLNVLGIDKAEADEKFGFLLE----AFKYGAPPHAGIALGWDRTAAILAGASSIRDVIAFP 564
Cdd:PRK12445 428 SELNDAEDQAERFQEQVNAKAAGDDEAMFYDEdyvtALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFP 499
AsnRS_cyto_like_N cd04323
AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and ...
22-104 4.22e-11

AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with mitochondrial protein synthesis. AsnRS is immunodominant antigen of the filarial nematode B. malayai and of interest as a target for anti-parasitic drug design. Human AsnRS has been shown to be a pro-inflammatory chemokine which interacts with CCR3 chemokine receptors on T cells, immature dendritic cells and macrophages.


Pssm-ID: 239818 [Multi-domain]  Cd Length: 84  Bit Score: 59.17  E-value: 4.22e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  22 KVTIAGWVDRRRDHGGVAFVDVRDNTGLVQVVIYDEETARP-----LRSEFVVQVTGEVRLRPDGNEndhlATGKIEIVA 96
Cdd:cd04323    1 RVKVFGWVHRLRSQKKLMFLVLRDGTGFLQCVLSKKLVTEFydaksLTQESSVEVTGEVKEDPRAKQ----APGGYELQV 76

                 ....*...
gi 490236703  97 QTVTILAK 104
Cdd:cd04323   77 DYLEIIGE 84
class_II_aaRS-like_core cd00768
Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA ...
149-272 5.58e-11

Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.


Pssm-ID: 238391 [Multi-domain]  Cd Length: 211  Bit Score: 62.52  E-value: 5.58e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 149 LRSNMAKAARHALEDMDFTEVETPTFIKSTPEGARDFVVPARLVPGSW----YALPQSPQLLKQLLMVSGV----ERYYQ 220
Cdd:cd00768    1 IRSKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHEPKDLLPVGAEneedLYLRPTLEPGLVRLFVSHIrklpLRLAE 80
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 490236703 221 LARCYRDEDFRAD--RQPEFTQLDMEMSFASQEDVMAMAE--RVIAAIWKEAGHEI 272
Cdd:cd00768   81 IGPAFRNEGGRRGlrRVREFTQLEGEVFGEDGEEASEFEEliELTEELLRALGIKL 136
PRK06462 PRK06462
asparagine synthetase A; Reviewed
120-306 2.98e-10

asparagine synthetase A; Reviewed


Pssm-ID: 235808 [Multi-domain]  Cd Length: 335  Bit Score: 61.96  E-value: 2.98e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 120 SENKLPSEDVRLKYRYLDLRRPSMQRNLKLRSNMAKAARHALEDMDFTEVETPTFIKST----PEGARDFVVPARL-VPG 194
Cdd:PRK06462   3 LERYPKEYEEFLRMSWKHISSEKYRKVLKVQSSILRYTREFLDGRGFVEVLPPIISPSTdplmGLGSDLPVKQISIdFYG 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 195 SWYALPQSPQLLKQLlMVSGVERYYQLARCYRDEDFRADRQP---EFTQLDMEMSFASQEDVMAMAERVIAAIWKEA--- 268
Cdd:PRK06462  83 VEYYLADSMILHKQL-ALRMLGKIFYLSPNFRLEPVDKDTGRhlyEFTQLDIEIEGADLDEVMDLIEDLIKYLVKELlee 161
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 490236703 269 -GHEI----------TLPLPRITWQEAMDKYGSDKPDlrfGNPLIELTD 306
Cdd:PRK06462 162 hEDELeffgrdlphlKRPFKRITHKEAVEILNEEGCR---GIDLEELGS 207
ScAspRS_mt_like_N cd04321
ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces ...
22-102 4.63e-10

ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this fungal group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Mutations in the gene for S. cerevisiae mtAspRS result in a "petite" phenotype typical for a mutation in a nuclear gene that results in a non-functioning mitochondrial protein synthesis system.


Pssm-ID: 239816 [Multi-domain]  Cd Length: 86  Bit Score: 56.17  E-value: 4.63e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  22 KVTIAGWVDRRRD-HGGVAFVDVRDNTG-LVQVVIYDEETA----RPLRSEFVVQVTGEVRLRPdgnENDHLATGKIEIV 95
Cdd:cd04321    1 KVTLNGWIDRKPRiVKKLSFADLRDPNGdIIQLVSTAKKDAfsllKSITAESPVQVRGKLQLKE---AKSSEKNDEWELV 77

                 ....*..
gi 490236703  96 AQTVTIL 102
Cdd:cd04321   78 VDDIQTL 84
PTZ00417 PTZ00417
lysine-tRNA ligase; Provisional
124-300 3.73e-09

lysine-tRNA ligase; Provisional


Pssm-ID: 173607 [Multi-domain]  Cd Length: 585  Bit Score: 59.64  E-value: 3.73e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 124 LPSEDVRLKYRYLDLR-RPSMQRNLKLRSNMAKAARHALEDMDFTEVETPTF-IKSTPEGARDFVVPARLVPGSWYaLPQ 201
Cdd:PTZ00417 229 LKDTEIRYRQRYLDLMiNESTRSTFITRTKIINYLRNFLNDRGFIEVETPTMnLVAGGANARPFITHHNDLDLDLY-LRI 307
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 202 SPQLLKQLLMVSGVERYYQLARCYRDEDFRADRQPEFTQLDMEMSFASQEDVMAMAERVIAAI-----------WKEAGH 270
Cdd:PTZ00417 308 ATELPLKMLIVGGIDKVYEIGKVFRNEGIDNTHNPEFTSCEFYWAYADFYDLIKWSEDFFSQLvmhlfgtykilYNKDGP 387
                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 490236703 271 E-------ITLPLPRITWQEAMDKYGSDKPDLRFGNP 300
Cdd:PTZ00417 388 EkdpieidFTPPYPKVSIVEELEKLTNTKLEQPFDSP 424
PLN02603 PLN02603
asparaginyl-tRNA synthetase
19-568 9.61e-09

asparaginyl-tRNA synthetase


Pssm-ID: 178213 [Multi-domain]  Cd Length: 565  Bit Score: 58.06  E-value: 9.61e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  19 VGQKVTIAGWVDRRRDHGGVAFVDVRDNTGL--VQVVI------YDEETARPLRSEFVVQVTGEVRLRPDGNEndhlatg 90
Cdd:PLN02603 106 VGKTLNVMGWVRTLRAQSSVTFIEVNDGSCLsnMQCVMtpdaegYDQVESGLITTGASVLVQGTVVSSQGGKQ------- 178
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  91 KIEIVAQTVTILAKSD-ALPFQvstalenesENKLPSEDVRLKyRYLDLRRPSMQRNLKLRSNMAKAARHALEDMDFTEV 169
Cdd:PLN02603 179 KVELKVSKIVVVGKSDpSYPIQ---------KKRVSREFLRTK-AHLRPRTNTFGAVARVRNALAYATHKFFQENGFVWV 248
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 170 ETPTFIKSTPEGARDFVVPARLVPGSWYA-------LPQSPQLL----------KQLLMVSG---VERY-------YQLA 222
Cdd:PLN02603 249 SSPIITASDCEGAGEQFCVTTLIPNSAENggslvddIPKTKDGLidwsqdffgkPAFLTVSGqlnGETYatalsdvYTFG 328
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 223 RCYRDEDFRADRQ-PEFTQLDMEMSFASQEDVMAMAERVIAAIWKEAGHEItlplpritwqeamdkygsdKPDLRFGNPL 301
Cdd:PLN02603 329 PTFRAENSNTSRHlAEFWMIEPELAFADLNDDMACATAYLQYVVKYILENC-------------------KEDMEFFNTW 389
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 302 IE--LTDFFKNTPFRVF-QASYVGAVLFKGGAetpRRQFDAWQDWakqrgakglayvvfGEDGElkgpvaknlSEEERAG 378
Cdd:PLN02603 390 IEkgIIDRLSDVVEKNFvQLSYTDAIELLLKA---KKKFEFPVKW--------------GLDLQ---------SEHERYI 443
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 379 LKEAVGaedGDAVFfaagsressqlllgavrvelasragllhpdefaftwVVDFPLFKRTddpddddvavghskwtsmhh 458
Cdd:PLN02603 444 TEEAFG---GRPVI------------------------------------IRDYPKEIKA-------------------- 464
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 459 pFTMPSADwidkfDKDPEHAMSDsydIVCNGNEMGGGSVRIHRDDIQDRVLNVLGIDKaeadEKFGFLLEAFKYGAPPHA 538
Cdd:PLN02603 465 -FYMREND-----DGKTVAAMDM---LVPRVGELIGGSQREERLEYLEARLDELKLNK----ESYWWYLDLRRYGSVPHA 531
                        570       580       590
                 ....*....|....*....|....*....|
gi 490236703 539 GIALGWDRTAAILAGASSIRDVIAFPKAGG 568
Cdd:PLN02603 532 GFGLGFERLVQFATGIDNIRDAIPFPRVPG 561
LysRS_N cd04322
LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS). These ...
22-138 1.07e-08

LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS). These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Included in this group are E. coli LysS and LysU. These two isoforms of LysRS are encoded by distinct genes which are differently regulated. Eukaryotes contain 2 sets of aaRSs, both of which encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Saccharomyces cerevisiae cytoplasmic and mitochondrial LysRSs have been shown to participate in the mitochondrial import of the only nuclear-encoded tRNA of S. cerevisiae (tRNAlysCUU). The gene for human LysRS encodes both the cytoplasmic and the mitochondrial isoforms of LysRS. In addition to their housekeeping role, human lysRS may function as a signaling molecule that activates immune cells and tomato LysRS may participate in a root-specific process possibly connected to conditions of oxidative-stress conditions or heavy metal uptake. It is known that human tRNAlys and LysRS are specifically packaged into HIV-1 suggesting a role for LysRS in tRNA packaging.


Pssm-ID: 239817 [Multi-domain]  Cd Length: 108  Bit Score: 53.25  E-value: 1.07e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  22 KVTIAGWVDRRRDHGGVAFVDVRDNTGLVQVVI----YDEETARPLRSEF----VVQVTGEVRLRPdgnendhlaTGKIE 93
Cdd:cd04322    1 EVSVAGRIMSKRGSGKLSFADLQDESGKIQVYVnkddLGEEEFEDFKKLLdlgdIIGVTGTPFKTK---------TGELS 71
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 490236703  94 IVAQTVTILAKSdaLpfqvstaleneseNKLPS-----EDVRLKYR--YLDL 138
Cdd:cd04322   72 IFVKEFTLLSKS--L-------------RPLPEkfhglTDVETRYRqrYLDL 108
PhAsnRS_like_N cd04319
PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus ...
22-136 1.11e-08

PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The archeal enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose.


Pssm-ID: 239814 [Multi-domain]  Cd Length: 103  Bit Score: 52.91  E-value: 1.11e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  22 KVTIAGWVDRRRDHGGVAFVDVRDNTGLVQVVI---YDEET---ARPLRSEFVVQVTGEVRLRPDgnendhlATGKIEIV 95
Cdd:cd04319    1 KVTLAGWVYRKREVGKKAFIVLRDSTGIVQAVFskdLNEEAyreAKKVGIESSVIVEGAVKADPR-------APGGAEVH 73
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 490236703  96 AQTVTILAKSDALPFqvstaleneseNKLPSEDVRLKYRYL 136
Cdd:cd04319   74 GEKLEIIQNVEFFPI-----------TEDASDEFLLDVRHL 103
genX TIGR00462
EF-P lysine aminoacylase GenX; Many Gram-negative bacteria have a protein closely homologous ...
165-288 1.87e-07

EF-P lysine aminoacylase GenX; Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown. [Unknown function, General]


Pssm-ID: 273090 [Multi-domain]  Cd Length: 290  Bit Score: 52.94  E-value: 1.87e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  165 DFTEVETPTFIKSTPEGARDFVVPARLVPGS-----WYaLPQSPQL-LKQLLmVSGVERYYQLARCYRDEDFRADRQPEF 238
Cdd:TIGR00462   6 GVLEVETPLLSPAPVTDPHLDAFATEFVGPDgqgrpLY-LQTSPEYaMKRLL-AAGSGPIFQICKVFRNGERGRRHNPEF 83
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 490236703  239 TQLDMEMSFASQEDVMAMAERVIAaiwkEAGHEITLPLPRITWQEAMDKY 288
Cdd:TIGR00462  84 TMLEWYRPGFDYHDLMDEVEALLQ----ELLGDPFAPAERLSYQEAFLRY 129
EcAsnRS_like_N cd04318
EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli ...
22-104 9.66e-07

EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. S. cerevisiae mtAsnRS can charge E.coli tRNA with asparagines. Mutations in the gene for S. cerevisiae mtAsnRS has been found to induce a "petite" phenotype typical for a mutation in a nuclear gene that results in a non-functioning mitochondrial protein synthesis system.


Pssm-ID: 239813 [Multi-domain]  Cd Length: 82  Bit Score: 46.79  E-value: 9.66e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  22 KVTIAGWVDRRRDHGGVAFVDVRDNTGL--VQVVIYDEETARPLRSEF----VVQVTGEVRLRPDGNEndhlatgKIEIV 95
Cdd:cd04318    1 EVTVNGWVRSVRDSKKISFIELNDGSCLknLQVVVDKELTNFKEILKLstgsSIRVEGVLVKSPGAKQ-------PFELQ 73

                 ....*....
gi 490236703  96 AQTVTILAK 104
Cdd:cd04318   74 AEKIEVLGE 82
PLN02221 PLN02221
asparaginyl-tRNA synthetase
491-571 2.04e-05

asparaginyl-tRNA synthetase


Pssm-ID: 177867 [Multi-domain]  Cd Length: 572  Bit Score: 47.30  E-value: 2.04e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 491 EMGGGSVRIHRDDIQDRVLNVLGIDKaeadEKFGFLLEAFKYGAPPHAGIALGWDRTAAILAGASSIRDVIAFPKAGGGR 570
Cdd:PLN02221 495 ELIGGSQREERYDVIKQRIEEMGLPI----EPYEWYLDLRRYGTVKHCGFGLGFERMILFATGIDNIRDVIPFPRYPGKA 570

                 .
gi 490236703 571 D 571
Cdd:PLN02221 571 D 571
GatE COG2511
Archaeal Glu-tRNAGln amidotransferase subunit E, contains GAD domain [Translation, ribosomal ...
302-413 3.30e-05

Archaeal Glu-tRNAGln amidotransferase subunit E, contains GAD domain [Translation, ribosomal structure and biogenesis];


Pssm-ID: 442001 [Multi-domain]  Cd Length: 630  Bit Score: 46.71  E-value: 3.30e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 302 IELTDFFKNTPFRVFQASY-----VGAVLFKG-----GAE-TPRRQFDA-WQDWAKQRGAKGLayvvFGEDgELkgPvAK 369
Cdd:COG2511  283 VDVTDVFKDTKSKVIKKALkkggkVLAVKLPGfagllGREiQPGRRLGTeLADYAKFWGVGGI----FHTD-EL--P-NY 354
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 490236703 370 NLSEEERAGLKEAVGAEDGDAVFFAAGSRESSQLLLGAV--RVELA 413
Cdd:COG2511  355 GITEEEVEALREALGAGEEDAFVIVADEEEKAKKALEAVieRAKEA 400
PTZ00425 PTZ00425
asparagine-tRNA ligase; Provisional
491-568 3.39e-05

asparagine-tRNA ligase; Provisional


Pssm-ID: 240414 [Multi-domain]  Cd Length: 586  Bit Score: 46.94  E-value: 3.39e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 490236703 491 EMGGGSvriHRDDIQDRvLNVLGIDKAEADEKFGFLLEAFKYGAPPHAGIALGWDRTAAILAGASSIRDVIAFPKAGG 568
Cdd:PTZ00425 509 EVIGGS---QREDNLER-LDKMIKEKKLNMESYWWYRQLRKFGSHPHAGFGLGFERLIMLVTGVDNIKDTIPFPRYPG 582
PLN02221 PLN02221
asparaginyl-tRNA synthetase
18-182 7.13e-05

asparaginyl-tRNA synthetase


Pssm-ID: 177867 [Multi-domain]  Cd Length: 572  Bit Score: 45.76  E-value: 7.13e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  18 LVGQKVTIAGWVDRRRDHG--GVAFVDVRDNT--GLVQVVIYD--EETARPLRSEFVVQVTGEVRLRPDGNENDHlatgK 91
Cdd:PLN02221  48 LAGQKVRIGGWVKTGREQGkgTFAFLEVNDGScpANLQVMVDSslYDLSTLVATGTCVTVDGVLKVPPEGKGTKQ----K 123
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  92 IEIVAQTVTILAKSDALPFQVstaleneSENKLPSEDVRlKYRYLDLRRPSMQRNLKLRSNMAKAARHALEDMDFTEVET 171
Cdd:PLN02221 124 IELSVEKVIDVGTVDPTKYPL-------PKTKLTLEFLR-DVLHLRSRTNSISAVARIRNALAFATHSFFQEHSFLYIHT 195
                        170
                 ....*....|.
gi 490236703 172 PTFIKSTPEGA 182
Cdd:PLN02221 196 PIITTSDCEGA 206
PRK04028 PRK04028
Glu-tRNA(Gln) amidotransferase subunit GatE;
298-413 7.32e-04

Glu-tRNA(Gln) amidotransferase subunit GatE;


Pssm-ID: 235205 [Multi-domain]  Cd Length: 630  Bit Score: 42.50  E-value: 7.32e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703 298 GNPLIELTDFFKNTPFRVFQASY-----VGAVLFKG-----GAET-PRRQFDA-WQDWAKQRGAKGLayvvFGEDgELkg 365
Cdd:PRK04028 278 EDEIVDVTELFKDTKSKIIKKALkkggkVLAIKLPGfkgllGREIqPGRRLGTeLADYAKAWGVGGI----FHTD-EL-- 350
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 490236703 366 PvAKNLSEEERAGLKEAVGAEDGDAVFFAAGSRESSQLLLGAV--RVELA 413
Cdd:PRK04028 351 P-AYGITEEEVEALREALGAGENDAFILVADEEEKAEKALEAVieRAKEA 399
PRK09350 PRK09350
elongation factor P--(R)-beta-lysine ligase;
525-560 1.16e-03

elongation factor P--(R)-beta-lysine ligase;


Pssm-ID: 236474 [Multi-domain]  Cd Length: 306  Bit Score: 41.45  E-value: 1.16e-03
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 490236703 525 FLLEAFKYGAPPHAGIALGWDRTAAILAGASSIRDV 560
Cdd:PRK09350 271 NLIAALEAGLPDCSGVALGVDRLIMLALGAESISEV 306
AspRS_cyto_N cd04320
AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces ...
22-112 6.81e-03

AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis.


Pssm-ID: 239815 [Multi-domain]  Cd Length: 102  Bit Score: 36.39  E-value: 6.81e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490236703  22 KVTIAGWVDRRRDHGG-VAFVDVRDNTGLVQVVIYDEET---------ARPLRSEFVVQVTGEVRLRPdgNENDHLATGK 91
Cdd:cd04320    1 EVLIRARVHTSRAQGAkLAFLVLRQQGYTIQGVLAASAEgvskqmvkwAGSLSKESIVDVEGTVKKPE--EPIKSCTQQD 78
                         90       100
                 ....*....|....*....|..
gi 490236703  92 IEIVAQTVTILAKSDA-LPFQV 112
Cdd:cd04320   79 VELHIEKIYVVSEAAEpLPFQL 100
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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