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Conserved domains on  [gi|490237538|ref|WP_004135834|]
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MULTISPECIES: TRAP transporter small permease [Klebsiella]

Protein Classification

TRAP transporter small permease( domain architecture ID 10006919)

TRAP transporter small permease is a component of a tripartite ATP-independent periplasmic transporter that facilitates the transport of a variety of solutes including ectoine; similar to Rhodobacter capsulatus DctQ, the small integral membrane protein of the C4-dicarboxylate TRAP transporter; TRAP transporter small permease is a component of a tripartite ATP-independent periplasmic transporter that facilitates the transport of one or more from a variety of solutes

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DctM COG3090
TRAP-type C4-dicarboxylate transport system, small permease component YiaM [Carbohydrate ...
2-166 2.01e-35

TRAP-type C4-dicarboxylate transport system, small permease component YiaM [Carbohydrate transport and metabolism];


:

Pssm-ID: 442324  Cd Length: 168  Bit Score: 121.18  E-value: 2.01e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490237538   2 ILNRIKLAVDRAIAAFSVAVMIALVVCVVWQVFSRYVLNQPSTLTDELARFLMIWVGLLGAAYTVGAQRHLAIDLLAMTL 81
Cdd:COG3090    3 LLKRLLDRLERLEEALAALLLAAMVLLVFAQVVLRYVFNSPLPWTEELARYLFVWLVFLGAAYAVRRGGHIRVDLLVDRL 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490237538  82 PPRRQALLSVIINLLIFIFAGsVIVTGGVKLIEKTLSTSQVSAAMQIPMGYVYLILPLTGIIMMFYTLCFISNGLKNMKN 161
Cdd:COG3090   83 PPRARRVLDLLALLLVLAFLA-LLAWYGWELVLRSWERGQTSPALGIPMWWVYLALPVGFALMALRLLLRLLRLLRGREP 161

                 ....*
gi 490237538 162 EEAGA 166
Cdd:COG3090  162 ELAEE 166
 
Name Accession Description Interval E-value
DctM COG3090
TRAP-type C4-dicarboxylate transport system, small permease component YiaM [Carbohydrate ...
2-166 2.01e-35

TRAP-type C4-dicarboxylate transport system, small permease component YiaM [Carbohydrate transport and metabolism];


Pssm-ID: 442324  Cd Length: 168  Bit Score: 121.18  E-value: 2.01e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490237538   2 ILNRIKLAVDRAIAAFSVAVMIALVVCVVWQVFSRYVLNQPSTLTDELARFLMIWVGLLGAAYTVGAQRHLAIDLLAMTL 81
Cdd:COG3090    3 LLKRLLDRLERLEEALAALLLAAMVLLVFAQVVLRYVFNSPLPWTEELARYLFVWLVFLGAAYAVRRGGHIRVDLLVDRL 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490237538  82 PPRRQALLSVIINLLIFIFAGsVIVTGGVKLIEKTLSTSQVSAAMQIPMGYVYLILPLTGIIMMFYTLCFISNGLKNMKN 161
Cdd:COG3090   83 PPRARRVLDLLALLLVLAFLA-LLAWYGWELVLRSWERGQTSPALGIPMWWVYLALPVGFALMALRLLLRLLRLLRGREP 161

                 ....*
gi 490237538 162 EEAGA 166
Cdd:COG3090  162 ELAEE 166
DctQ pfam04290
Tripartite ATP-independent periplasmic transporters, DctQ component; The function of the ...
25-158 4.94e-24

Tripartite ATP-independent periplasmic transporters, DctQ component; The function of the members of this family is unknown, but DctQ homologs are invariably found in the tripartite ATP-independent periplasmic transporters.


Pssm-ID: 427843  Cd Length: 132  Bit Score: 90.81  E-value: 4.94e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490237538   25 LVVCVVWQVFSRYVLNQPSTLTDELARFLMIWVGLLGAAYTVGAQRHLAIDLLAMTLPPRRQALLSVIINLLIFIFAGSV 104
Cdd:pfam04290   1 MVLVVFAQVFSRYLFNSPLPWTEELARYLFVWLVFLGAALALRRGSHIRVDLLVDRLPPRVRRLLDLIADLLVLAFAAVL 80
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 490237538  105 IVTGGVKLIEktLSTSQVSAAMQIPMGYVYLILPLTGIIMMFYTLCFISNGLKN 158
Cdd:pfam04290  81 AWAGWLVVAL--LGGGETSPALGLPLWWVYLALPVGAALLALRALARLVRLLRG 132
PRK09877 PRK09877
2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM; Provisional
19-149 6.44e-07

2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM; Provisional


Pssm-ID: 182129  Cd Length: 157  Bit Score: 46.45  E-value: 6.44e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490237538  19 VAVMIALVVCVVW-QVFSRYVLNQPSTLTDELARFLMIWVGLLGAAYTVGAQRHLAIDLLAMTLPPRRQALLSVIINLLI 97
Cdd:PRK09877   9 LAINIAVLSCIVFiNIILRYGFQTSILSVDELSRYLFVWLTFIGAIVAFMDNAHVQVTFLVEKLSPANQRRVSLLTHSLI 88
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 490237538  98 FIFAGSVivtgGVKLIEKTLST-SQVSAAMQIPMGYVYLILPLTGIIMMFYTL 149
Cdd:PRK09877  89 LLLCGAL----AWGATLKTIQDwSDYSPILGLPIGLMYAACLPTSLVIALFEL 137
 
Name Accession Description Interval E-value
DctM COG3090
TRAP-type C4-dicarboxylate transport system, small permease component YiaM [Carbohydrate ...
2-166 2.01e-35

TRAP-type C4-dicarboxylate transport system, small permease component YiaM [Carbohydrate transport and metabolism];


Pssm-ID: 442324  Cd Length: 168  Bit Score: 121.18  E-value: 2.01e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490237538   2 ILNRIKLAVDRAIAAFSVAVMIALVVCVVWQVFSRYVLNQPSTLTDELARFLMIWVGLLGAAYTVGAQRHLAIDLLAMTL 81
Cdd:COG3090    3 LLKRLLDRLERLEEALAALLLAAMVLLVFAQVVLRYVFNSPLPWTEELARYLFVWLVFLGAAYAVRRGGHIRVDLLVDRL 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490237538  82 PPRRQALLSVIINLLIFIFAGsVIVTGGVKLIEKTLSTSQVSAAMQIPMGYVYLILPLTGIIMMFYTLCFISNGLKNMKN 161
Cdd:COG3090   83 PPRARRVLDLLALLLVLAFLA-LLAWYGWELVLRSWERGQTSPALGIPMWWVYLALPVGFALMALRLLLRLLRLLRGREP 161

                 ....*
gi 490237538 162 EEAGA 166
Cdd:COG3090  162 ELAEE 166
DctQ pfam04290
Tripartite ATP-independent periplasmic transporters, DctQ component; The function of the ...
25-158 4.94e-24

Tripartite ATP-independent periplasmic transporters, DctQ component; The function of the members of this family is unknown, but DctQ homologs are invariably found in the tripartite ATP-independent periplasmic transporters.


Pssm-ID: 427843  Cd Length: 132  Bit Score: 90.81  E-value: 4.94e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490237538   25 LVVCVVWQVFSRYVLNQPSTLTDELARFLMIWVGLLGAAYTVGAQRHLAIDLLAMTLPPRRQALLSVIINLLIFIFAGSV 104
Cdd:pfam04290   1 MVLVVFAQVFSRYLFNSPLPWTEELARYLFVWLVFLGAALALRRGSHIRVDLLVDRLPPRVRRLLDLIADLLVLAFAAVL 80
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 490237538  105 IVTGGVKLIEktLSTSQVSAAMQIPMGYVYLILPLTGIIMMFYTLCFISNGLKN 158
Cdd:pfam04290  81 AWAGWLVVAL--LGGGETSPALGLPLWWVYLALPVGAALLALRALARLVRLLRG 132
FcbT2 COG4665
TRAP-type mannitol/chloroaromatic compound transport system, small permease component ...
3-158 5.91e-18

TRAP-type mannitol/chloroaromatic compound transport system, small permease component [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 443702  Cd Length: 170  Bit Score: 76.00  E-value: 5.91e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490237538   3 LNRIKLAVDR---AIAAFSVAVMIALVVCVVWQVFSRYVLNQPSTLTDELARFLMIWVGLLGAAYTVGAQRHLAIDLLAM 79
Cdd:COG4665    2 LLRLSRAIDRlnrWIGRLAAWLILALVLLIVYEVVLRYLFNAPSIWALELQWYLFAAIFLLGAAYTLRRGGHVRVDILYG 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490237538  80 TLPPRRQALLSVIINLLIFIFAGSVIVTGGVKLIEKTLSTSQVSA-AMQIPMGYVYLILPLTGIIMMfytLCFISNGLKN 158
Cdd:COG4665   82 RLSPRTRAWLDLLGTLLFLLPFCLLLLWASWPFALRSWAIGERSSsAGGLPLWPIKALIPLGFALLA---LQGLAELIRA 158
PRK09877 PRK09877
2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM; Provisional
19-149 6.44e-07

2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM; Provisional


Pssm-ID: 182129  Cd Length: 157  Bit Score: 46.45  E-value: 6.44e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490237538  19 VAVMIALVVCVVW-QVFSRYVLNQPSTLTDELARFLMIWVGLLGAAYTVGAQRHLAIDLLAMTLPPRRQALLSVIINLLI 97
Cdd:PRK09877   9 LAINIAVLSCIVFiNIILRYGFQTSILSVDELSRYLFVWLTFIGAIVAFMDNAHVQVTFLVEKLSPANQRRVSLLTHSLI 88
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 490237538  98 FIFAGSVivtgGVKLIEKTLST-SQVSAAMQIPMGYVYLILPLTGIIMMFYTL 149
Cdd:PRK09877  89 LLLCGAL----AWGATLKTIQDwSDYSPILGLPIGLMYAACLPTSLVIALFEL 137
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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