|
Name |
Accession |
Description |
Interval |
E-value |
| ARO8 |
COG1167 |
DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain ... |
20-463 |
2.28e-138 |
|
DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain [Transcription, Amino acid transport and metabolism]; DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain is part of the Pathway/BioSystem: Lysine biosynthesis
Pssm-ID: 440781 [Multi-domain] Cd Length: 471 Bit Score: 406.14 E-value: 2.28e-138
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 20 ETSSRTPLWRQLAEALRLLILDGRLTLQTRLPGERELAAALNVSRTTIASALGQLREEGFLYSRQGSGSRiVLPERPADL 99
Cdd:COG1167 6 DRDSSGPLYLQLADALREAILSGRLPPGDRLPSSRELAAQLGVSRSTVVRAYEELEAEGLIESRPGSGTF-VAARLPAPA 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 100 PLPAGISS---------------TLNLSTAALSAG----PEVHQAFQHAMTLLPPYLAqTGYDQQGLPVLREAIARRYSE 160
Cdd:COG1167 85 PAPRAAAAvaapalrrlleaapgVIDLGSGAPDPDlfplAALRRALRRALRRLPPALL-GYGDPQGLPELREAIARYLAR 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 161 RGLPTRPDEVMVVNGALSAFALILRLFTGPGDRVVIDAPTYPMAISAIQGASCRPVGVALPQQGWDCDGLAATIAQTAPR 240
Cdd:COG1167 164 RGVPASPDQILITSGAQQALDLALRALLRPGDTVAVESPTYPGALAALRAAGLRLVPVPVDEDGLDLDALEAALRRHRPR 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 241 LAWLMPDFHNPTGRCMDAPTRQRVADIAARTRTTLVIDETMADLWYNAPPPPPLASFNPDAAVLTIGSAGKSFWGGLRIG 320
Cdd:COG1167 244 AVYVTPSHQNPTGATMSLERRRALLELARRHGVPIIEDDYDSELRYDGRPPPPLAALDAPGRVIYIGSFSKTLAPGLRLG 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 321 WIRASARTIASLIQARDSLDLGTPLLEQLACSWLLEN--AATLLPPRRDMLKARRDMCETLMAEYFP-RWRFSPPEGGLS 397
Cdd:COG1167 324 YLVAPGRLIERLARLKRATDLGTSPLTQLALAEFLESghYDRHLRRLRREYRARRDLLLAALARHLPdGLRVTGPPGGLH 403
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 490244489 398 FWVELPDML-ATLFSARAESQGIHIGTGTRFGLEGAFDRYLRLPFT-LPDEALRRAFSTLQPLWQSLA 463
Cdd:COG1167 404 LWLELPEGVdAEALAAAALARGILVAPGSAFSADGPPRNGLRLGFGaPSEEELEEALRRLAELLRELA 471
|
|
| AAT_like |
cd00609 |
Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent ... |
142-456 |
2.24e-65 |
|
Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein.
Pssm-ID: 99734 [Multi-domain] Cd Length: 350 Bit Score: 214.51 E-value: 2.24e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 142 YDQQGLPVLREAIARRYSER-GLPTRPDEVMVVNGALSAFALILRLFTGPGDRVVIDAPTYPMAISAIQGASCRPVGVAL 220
Cdd:cd00609 33 YPDPGLPELREAIAEWLGRRgGVDVPPEEIVVTNGAQEALSLLLRALLNPGDEVLVPDPTYPGYEAAARLAGAEVVPVPL 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 221 -PQQGWDCDGLAATIAQTA-PRLAWLMPdFHNPTGRCMDAPTRQRVADIAARTRTTLVIDETMADLWYNAPPPPPLASFN 298
Cdd:cd00609 113 dEEGGFLLDLELLEAAKTPkTKLLYLNN-PNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALALLD 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 299 PDAAVLTIGSAGKSF-WGGLRIGWIRASARTIASLIQAR-DSLDLGTPLLEQLACSWLLENAATLLPPRRDMLKARRDMC 376
Cdd:cd00609 192 AYERVIVLRSFSKTFgLPGLRIGYLIAPPEELLERLKKLlPYTTSGPSTLSQAAAAAALDDGEEHLEELRERYRRRRDAL 271
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 377 ETLMAEYFPrWRFSPPEGGLSFWVELPDMLATLFSAR-AESQGIHIGTGTRFGLEGafDRYLRLPFTLPDEALRRAFSTL 455
Cdd:cd00609 272 LEALKELGP-LVVVKPSGGFFLWLDLPEGDDEEFLERlLLEAGVVVRPGSAFGEGG--EGFVRLSFATPEEELEEALERL 348
|
.
gi 490244489 456 Q 456
Cdd:cd00609 349 A 349
|
|
| AspB |
COG0436 |
Aspartate/methionine/tyrosine aminotransferase [Amino acid transport and metabolism]; ... |
140-456 |
2.13e-54 |
|
Aspartate/methionine/tyrosine aminotransferase [Amino acid transport and metabolism]; Aspartate/methionine/tyrosine aminotransferase is part of the Pathway/BioSystem: Isoleucine, leucine, valine biosynthesis
Pssm-ID: 440205 [Multi-domain] Cd Length: 387 Bit Score: 186.49 E-value: 2.13e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 140 TGY-DQQGLPVLREAIARRYSER-GLPTRPDEVMVVNGALSAFALILRLFTGPGDRVVIDAPTYPMAISAIQGASCRPVG 217
Cdd:COG0436 61 TGYtPSAGIPELREAIAAYYKRRyGVDLDPDEILVTNGAKEALALALLALLNPGDEVLVPDPGYPSYRAAVRLAGGKPVP 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 218 VAL-PQQGW--DCDGLAATIaqtAPRLAWLM---PdfHNPTGRCMDAPTRQRVADIAARTRTTLVIDETMADLWYNAPPP 291
Cdd:COG0436 141 VPLdEENGFlpDPEALEAAI---TPRTKAIVlnsP--NNPTGAVYSREELEALAELAREHDLLVISDEIYEELVYDGAEH 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 292 PPLASFnPDAA--VLTIGSAGKSF-WGGLRIGWIRASARTIASLIQARDSLDLGTPLLEQLACSWLLENAATLLPPRRDM 368
Cdd:COG0436 216 VSILSL-PGLKdrTIVINSFSKSYaMTGWRIGYAVGPPELIAALLKLQSNLTSCAPTPAQYAAAAALEGPQDYVEEMRAE 294
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 369 LKARRDMCETLMAEYfpRWRFSPPEGGLSFWVELPDMLATL--FSARA-ESQGIHIGTGTRFGLEGafDRYLRLPFTLPD 445
Cdd:COG0436 295 YRRRRDLLVEGLNEI--GLSVVKPEGAFYLFADVPELGLDSeeFAERLlEEAGVAVVPGSAFGPAG--EGYVRISYATSE 370
|
330
....*....|.
gi 490244489 446 EALRRAFSTLQ 456
Cdd:COG0436 371 ERLEEALERLA 381
|
|
| Aminotran_1_2 |
pfam00155 |
Aminotransferase class I and II; |
143-451 |
7.79e-29 |
|
Aminotransferase class I and II;
Pssm-ID: 395103 [Multi-domain] Cd Length: 351 Bit Score: 116.64 E-value: 7.79e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 143 DQQGLPVLREAIARRY--SERGLPTRPDEVMVVNGALSAFALILRLFTGPGDRVVIDAPTYPMAISAIQGASCRPVGVAL 220
Cdd:pfam00155 37 PTDGHPELREALAKFLgrSPVLKLDREAAVVFGSGAGANIEALIFLLANPGDAILVPAPTYASYIRIARLAGGEVVRYPL 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 221 -PQQGW--DCDGLAATIAQtAPRLAWLM-PdfHNPTGRCMDAPTRQRVADIAARTRTTLVIDETMADLWYNAPPPPPLAS 296
Cdd:pfam00155 117 yDSNDFhlDFDALEAALKE-KPKVVLHTsP--HNPTGTVATLEELEKLLDLAKEHNILLLVDEAYAGFVFGSPDAVATRA 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 297 F-NPDAAVLTIGSAGKSFwG--GLRIGWIRASARTIASLIQARDSLDLGTPLleQLACSWLLENAATL---LPPRRDMLK 370
Cdd:pfam00155 194 LlAEGPNLLVVGSFSKAF-GlaGWRVGYILGNAAVISQLRKLARPFYSSTHL--QAAAAAALSDPLLVaseLEEMRQRIK 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 371 ARRDMCETLMAEyfPRWRFSPPEGGLSFWVELPDMLATLFSAR-AESQGIHIGTGTRFGLEGafdrYLRLPFT-LPDEAL 448
Cdd:pfam00155 271 ERRDYLRDGLQA--AGLSVLPSQAGFFLLTGLDPETAKELAQVlLEEVGVYVTPGSSPGVPG----WLRITVAgGTEEEL 344
|
...
gi 490244489 449 RRA 451
Cdd:pfam00155 345 EEL 347
|
|
| PRK06108 |
PRK06108 |
pyridoxal phosphate-dependent aminotransferase; |
98-441 |
3.96e-26 |
|
pyridoxal phosphate-dependent aminotransferase;
Pssm-ID: 180404 Cd Length: 382 Bit Score: 109.26 E-value: 3.96e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 98 DLPLPAGISSTlnlSTAALSAGpevhqafqhamtllppylaQTGYDQQ-GLPVLREAIARRYSER-GLPTRPDEVMVVNG 175
Cdd:PRK06108 35 DLPTPDFIRDA---AAAALADG-------------------ETFYTHNlGIPELREALARYVSRLhGVATPPERIAVTSS 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 176 ALSAFALILRLFTGPGDRVVIDAPTYP--MAISAIQGASCRPVGVALPQQGWDCDgLAATIAQTAPRLAWLM---PDfhN 250
Cdd:PRK06108 93 GVQALMLAAQALVGPGDEVVAVTPLWPnlVAAPKILGARVVCVPLDFGGGGWTLD-LDRLLAAITPRTRALFinsPN--N 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 251 PTGRCMDAPTRQRVADIAARTRTTLVIDETMADLWYNAPPPPPlaSF----NPDAAVLTIGSAGKSF-WGGLRIGWI--- 322
Cdd:PRK06108 170 PTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAP--SFldiaEPDDRIIFVNSFSKNWaMTGWRLGWLvap 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 323 RASARTIASLIQARDSldlGTPLLEQLACSWLLENAATLLPPRRDMLKARRDM-CETLMAeyFPRWRFSPPEGGLSFWVE 401
Cdd:PRK06108 248 PALGQVLEKLIEYNTS---CVAQFVQRAAVAALDEGEDFVAELVARLRRSRDHlVDALRA--LPGVEVAKPDGAMYAFFR 322
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 490244489 402 LPDMLATLFSARA--ESQGIHIGTGTRFGLEGafDRYLRLPF 441
Cdd:PRK06108 323 IPGVTDSLALAKRlvDEAGLGLAPGTAFGPGG--EGFLRWCF 362
|
|
| HisC |
COG0079 |
Histidinol-phosphate/aromatic aminotransferase or cobyric acid decarboxylase [Amino acid ... |
150-452 |
1.07e-23 |
|
Histidinol-phosphate/aromatic aminotransferase or cobyric acid decarboxylase [Amino acid transport and metabolism]; Histidinol-phosphate/aromatic aminotransferase or cobyric acid decarboxylase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis
Pssm-ID: 439849 [Multi-domain] Cd Length: 341 Bit Score: 101.75 E-value: 1.07e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 150 LREAIARRYserGLPtrPDEVMVVNGALSAFALILRLFTGPGDRVVIDAPTYPM-AISAiQGASCRPVGVAL-PQQGWDC 227
Cdd:COG0079 53 LREALAEYY---GVP--PEQVLVGNGSDELIQLLARAFLGPGDEVLVPEPTFSEyPIAA-RAAGAEVVEVPLdEDFSLDL 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 228 DGLAATIAQtAPRLAWL-MPdfHNPTGRCMDaptRQRVADIAARTR--TTLVIDETMADLwynAPPPPPLASFNPDAA-V 303
Cdd:COG0079 127 DALLAAITE-RTDLVFLcNP--NNPTGTLLP---REELEALLEALPadGLVVVDEAYAEF---VPEEDSALPLLARYPnL 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 304 LTIGSAGKsFWG--GLRIGWIRASARTIASLIQARDSLDLGTplLEQLACSWLLENAATLLpPRRDMLKARRDmcetLMA 381
Cdd:COG0079 198 VVLRTFSK-AYGlaGLRLGYAIASPELIAALRRVRGPWNVNS--LAQAAALAALEDRAYLE-ETRARLRAERE----RLA 269
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490244489 382 EYFPRWRFSPPEGGLSF-WVELPDMLATLFsARAESQGIHIGTGTRFGLEGafdrYLRlpFTLPDEALRRAF 452
Cdd:COG0079 270 AALRALGLTVYPSQANFvLVRVPEDAAELF-EALLERGILVRDFSSFGLPD----YLR--ITVGTPEENDRL 334
|
|
| MalY |
COG1168 |
Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor ... |
150-450 |
6.75e-23 |
|
Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism, General function prediction only];
Pssm-ID: 440782 Cd Length: 387 Bit Score: 100.17 E-value: 6.75e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 150 LREAIARRYSER-GLPTRPDEVMVVNGALSAFALILRLFTGPGDRVVIDAPTYPMAISAIQGASCRPVGVALPQQG---- 224
Cdd:COG1168 69 YYEAIIDWLKRRhGWEIDPEWIVFTPGVVPGLALAIRAFTEPGDGVLIQTPVYPPFFKAIENNGRELVENPLILEDgryr 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 225 WDCDGLAATIAQtAPRLawLM---PdfHNPTGRCMDAPTRQRVADIAARTRTTLVIDETMADLWYNAPPPPPLASFNPDA 301
Cdd:COG1168 149 IDFDDLEAKLDP-GVKL--LLlcnP--HNPTGRVWTREELERLAELCERHDVLVISDEIHADLVLPGHKHTPFASLSEEA 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 302 A--VLTIGSAGKSF-WGGLRIGWIRASARTIASLIQAR-DSLDLGTP-LLEQLAC--------SWLLEnaatLLpprrDM 368
Cdd:COG1168 224 AdrTITLTSPSKTFnLAGLKASYAIIPNPALRARFARAlEGLGLPSPnVLGLVATeaayregeEWLDE----LL----AY 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 369 LKARRDMCETLMAEYFPRWRFSPPEGG-LSfWVEL------PDMLATLFSARAesqGIHIGTGTRFGLEGafDRYLRLPF 441
Cdd:COG1168 296 LRGNRDLLAEFLAEHLPGVKVTPPEATyLA-WLDCralgldDEELAEFLLEKA---GVALSDGATFGEGG--EGFVRLNF 369
|
330
....*....|...
gi 490244489 442 TLP----DEALRR 450
Cdd:COG1168 370 ACPravlEEALER 382
|
|
| PRK07550 |
PRK07550 |
aminotransferase; |
96-447 |
4.66e-22 |
|
aminotransferase;
Pssm-ID: 181026 [Multi-domain] Cd Length: 386 Bit Score: 97.72 E-value: 4.66e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 96 PADLPLpagisstLNLSTAALSAGPevHQAFQHAM--TLLPPylAQTGYDQ-QGLPVLREAIARRYSER-GLPTRPDEVM 171
Cdd:PRK07550 26 GADGPL-------IDLSQAVPGYPP--PPELLRALaeAAADP--AAHLYGPvEGLPELREAYAAHYSRLyGAAISPEQVH 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 172 VVNGALSAFALILRLFTGPGDRVVIDAPTY---PMAIsAIQGASCRPVGVA-----LPqqgwDCDGLAATIAQTAPRLAW 243
Cdd:PRK07550 95 ITSGCNQAFWAAMVTLAGAGDEVILPLPWYfnhKMWL-DMLGIRPVYLPCDegpglLP----DPAAAEALITPRTRAIAL 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 244 LMPDfhNPTGRCMDAPTRQRVADIAARTRTTLVIDETMADLWYNAPPPPPL-ASFNPDAAVLTIGSAGKSF-WGGLRIGW 321
Cdd:PRK07550 170 VTPN--NPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLfADPDWDDTLVHLYSFSKSYaLTGHRVGA 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 322 IRASARTIASLIQARDSLDLGTPLLEQLACSWLLENAATLLPPRRDMLKARRDMCETLMAEyFPRWRFSpPEGGLSFWVE 401
Cdd:PRK07550 248 VVASPARIAEIEKFMDTVAICAPRIGQIAVAWGLPNLADWRAGNRAEIARRRDAFRAVFAR-LPGWELL-ASGAYFAYVR 325
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 490244489 402 LP-DMLATLFSAR--AESQGIHIGTGTRFGLEGafDRYLRLPFTLPDEA 447
Cdd:PRK07550 326 HPfPDRPSREVARrlAKEAGILCLPGTMFGPGQ--EGYLRLAFANADVA 372
|
|
| PRK07681 |
PRK07681 |
LL-diaminopimelate aminotransferase; |
139-466 |
3.10e-21 |
|
LL-diaminopimelate aminotransferase;
Pssm-ID: 181081 Cd Length: 399 Bit Score: 95.26 E-value: 3.10e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 139 QTGYDQQGLPVLREAIARRYSER-GLPTRPD-EVMVVNGALSAFALILRLFTGPGDRVVIDAPTYPMAISAIQGASCRPV 216
Cdd:PRK07681 63 SYGYTLSGIQEFHEAVTEYYNNThNVILNADkEVLLLMGSQDGLVHLPMVYANPGDIILVPDPGYTAYETGIQMAGATSY 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 217 GVALPQQG---WDCDGLAATIAQTAPRLAWLMPDfhNPTGRCMDAPTRQRVADIAARTRTTLVIDETMADLWYNAPPPPP 293
Cdd:PRK07681 143 YMPLKKENdflPDLELIPEEIADKAKMMILNFPG--NPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPIS 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 294 LASFnPDA--AVLTIGSAGKSF-WGGLRIGWIRASARTIASLIQARDSLDLGTPLLEQLACSWLLENAATLLPPRRDMLK 370
Cdd:PRK07681 221 FLSV-PGAkeVGVEINSLSKSYsLAGSRIGYMIGNEEIVRALTQFKSNTDYGVFLPIQKAACAALRNGAAFCEKNRGIYQ 299
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 371 ARRDMCETLMAEYfpRWRFSPPEGGLSFWVELPDMLATLFSARA--ESQGIHIGTGTRFGLEGafDRYLRLPFTLPDEAL 448
Cdd:PRK07681 300 ERRDTLVDGFRTF--GWNVDKPAGSMFVWAEIPKGWTSLSFAYAlmDRANVVVTPGHAFGPHG--EGFVRIALVQDEEVL 375
|
330 340
....*....|....*....|
gi 490244489 449 RRAFSTLQP--LWQSLAEQK 466
Cdd:PRK07681 376 QQAVENIRNsgIFALEKVDE 395
|
|
| PRK15481 |
PRK15481 |
transcriptional regulatory protein PtsJ; Provisional |
33-429 |
4.04e-21 |
|
transcriptional regulatory protein PtsJ; Provisional
Pssm-ID: 185378 [Multi-domain] Cd Length: 431 Bit Score: 95.50 E-value: 4.04e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 33 EALRLLILDGRLTLQTRLPGERELAAALNVSRTTIASALGQLREEGFLYSRQGSGSRIVLPERPADLplpAGISSTLNLS 112
Cdd:PRK15481 12 DSIRQLIQAGRLRPGDSLPPVRELASELGVNRNTVAAAYKRLVTAGLAQSQGRNGTVIRGSPSPVAL---EGGDPGTPLH 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 113 TAAlSAGPEVhqafqhamTLLP---PYLAQTGYDQQ--GLPVLR---EAIARRYSERGLPTrPDEVMVVNGALSAFALIL 184
Cdd:PRK15481 89 DLA-GGNPDP--------QRLPdlsRYFARLSRTPRlyGDAPVSpelHAWAARWLRDDCPV-AFEIDLTSGAIDAIERLL 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 185 RLFTGPGDRVVIDAPTYPMAISAIQGASCRPVGVALPQQGWDCDGLAATIAQTApRLAWLMPDFHNPTGRCMDAPTRQRV 264
Cdd:PRK15481 159 CAHLLPGDSVAVEDPCFLSSINMLRYAGFSASPVSVDAEGMQPEKLERALAQGA-RAVILTPRAHNPTGCSLSARRAAAL 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 265 ADIAARTRTTLVIDETMADLWYNAPPPPPLASFNPDAAVltIGSAGKSFWGGLRIGWIRASARTIASLiqaRDSLDLGTP 344
Cdd:PRK15481 238 RNLLARYPQVLVIIDDHFALLSSSPYHSVIPQTTQRWAL--IRSVSKALGPDLRLAFVASDSATSARL---RLRLNSGTQ 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 345 ----LLEQLACSWLL--ENAATLLPPRRDMLKARRDMCETLMAEYFPrwrFSPPEGGLSFWVELP-DMLATLFS-ARaes 416
Cdd:PRK15481 313 wvshLLQDLVYACLTdpEYQARLAQARLFYAQRRQKLARALQQYGIA---IPSPGDGLNLWLPLDtDSQATALTlAK--- 386
|
410
....*....|...
gi 490244489 417 QGIHIGTGTRFGL 429
Cdd:PRK15481 387 SGWLVREGEAFGV 399
|
|
| WHTH_GntR |
cd07377 |
Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional ... |
26-90 |
4.82e-21 |
|
Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is presumed to result in a conformational change that regulates the DNA-binding affinity of the repressor. The GntR-like proteins bind as dimers, where each monomer recognizes a half-site of 2-fold symmetric DNA sequences.
Pssm-ID: 153418 [Multi-domain] Cd Length: 66 Bit Score: 86.35 E-value: 4.82e-21
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 490244489 26 PLWRQLAEALRLLILDGRLTLQTRLPGERELAAALNVSRTTIASALGQLREEGFLYSRQGSGSRI 90
Cdd:cd07377 1 PLYEQIADQLREAILSGELKPGDRLPSERELAEELGVSRTTVREALRELEAEGLVERRPGRGTFV 65
|
|
| tyr_nico_aTase |
TIGR01265 |
tyrosine/nicotianamine family aminotransferase; This subfamily of pyridoxal ... |
93-456 |
6.47e-21 |
|
tyrosine/nicotianamine family aminotransferase; This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Pssm-ID: 188123 Cd Length: 403 Bit Score: 94.33 E-value: 6.47e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 93 PERPAdLPLPAGISSTL-NLSTAalsagPEVHQAFQHAmtllppyLAQTGYD----QQGLPVLREAIARRYSeRGLPTR- 166
Cdd:TIGR01265 29 PEKPV-IPLSHGDPSVFgNLRTD-----PEAEEAVKDA-------LRSGKFNgyapSVGALAAREAVAEYLS-SDLPGKl 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 167 -PDEVMVVNGALSAFALILRLFTGPGDRVVIDAPTYPM--AISAIQGASCRPVGVaLPQQGW--DCDGLAATIAQTAPRL 241
Cdd:TIGR01265 95 tADDVVLTSGCSQAIEICIEALANPGANILVPRPGFPLydTRAAFSGLEVRLYDL-LPEKDWeiDLDGLESLADEKTVAI 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 242 AWLMPDfhNPTGRCMDAPTRQRVADIAARTRTTLVIDETMADLWYNAPPPPPLASFNPDAAVLTIGSAGKSFW-GGLRIG 320
Cdd:TIGR01265 174 VVINPS--NPCGSVFSRDHLQKIAEVAEKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLGGISKRWVvPGWRLG 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 321 WIRASAR------TIASLIQARDSLDLGTPLLEQLACSWLLENA-ATLLPPRRDMLKARRDMCETLMAEyFPRWRFSPPE 393
Cdd:TIGR01265 252 WIIIHDPhgifrdTVLQGLKNLLQRILGPATIVQGALPDILENTpQEFFDGKISVLKSNAELCYEELKD-IPGLVCPKPE 330
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 394 GGLSFWVEL-----PDMLATL--FSARAESQGIHIGTGTRFGLEGafdrYLRLPFTLPDEALRRAFSTLQ 456
Cdd:TIGR01265 331 GAMYLMVKLelelfPEIKDDVdfCEKLAREESVICLPGSAFGLPN----WVRITITVPESMLEEACSRIK 396
|
|
| PRK05764 |
PRK05764 |
aspartate aminotransferase; Provisional |
139-456 |
3.01e-20 |
|
aspartate aminotransferase; Provisional
Pssm-ID: 235596 Cd Length: 393 Bit Score: 92.50 E-value: 3.01e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 139 QTGY-DQQGLPVLREAIARRYSER-GLPTRPDEVMVVNGA----LSAFALILRlftgPGDRVVIDAP---TYPMAISAiq 209
Cdd:PRK05764 61 KTKYtPAAGIPELREAIAAKLKRDnGLDYDPSQVIVTTGAkqalYNAFMALLD----PGDEVIIPAPywvSYPEMVKL-- 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 210 gASCRPVGVALPQQgwdcDGLAATIAQTA----PRLAWLM---PdfHNPTGRCMDAPTRQRVADIAARTRTTLVIDETMA 282
Cdd:PRK05764 135 -AGGVPVFVPTGEE----NGFKLTVEQLEaaitPKTKALIlnsP--SNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYE 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 283 DLWYNAPPPPPLASFNPDAA--VLTIGSAGKSF----WgglRIGWIRASARtiasLIQARDSLD----LGTPLLEQLACS 352
Cdd:PRK05764 208 KLVYDGAEFTSIASLSPELRdrTITVNGFSKAYamtgW---RLGYAAGPKE----LIKAMSKLQshstSNPTSIAQYAAV 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 353 WLLENAATLLPPRRDMLKARRD-MCETLMA-EYFPRWRfspPEGglSFWVeLPD----MLATLFSARA------ESQGIH 420
Cdd:PRK05764 281 AALNGPQDEVEEMRQAFEERRDlMVDGLNEiPGLECPK---PEG--AFYV-FPNvsklLGKSITDSLEfaeallEEAGVA 354
|
330 340 350
....*....|....*....|....*....|....*.
gi 490244489 421 IGTGTRFGLEGafdrYLRLPFTLPDEALRRAFSTLQ 456
Cdd:PRK05764 355 VVPGIAFGAPG----YVRLSYATSLEDLEEGLERIE 386
|
|
| MngR |
COG2188 |
DNA-binding transcriptional regulator, GntR family [Transcription]; |
22-127 |
3.35e-20 |
|
DNA-binding transcriptional regulator, GntR family [Transcription];
Pssm-ID: 441791 [Multi-domain] Cd Length: 238 Bit Score: 89.54 E-value: 3.35e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 22 SSRTPLWRQLAEALRLLILDGRLTLQTRLPGERELAAALNVSRTTIASALGQLREEGFLYSRQGSGSRIVLPERPADLPL 101
Cdd:COG2188 1 SSPVPLYLQIADALRERIESGELPPGDRLPSERELAEEFGVSRMTVRKALDELVEEGLLERRQGRGTFVAEPKIEYPLSR 80
|
90 100 110
....*....|....*....|....*....|....*.
gi 490244489 102 PAGISSTLN----------LSTAALSAGPEVHQAFQ 127
Cdd:COG2188 81 LTSFTEELRargrepstrvLSAERVPADEEVAEALG 116
|
|
| PRK07777 |
PRK07777 |
putative succinyldiaminopimelate transaminase DapC; |
146-374 |
2.62e-18 |
|
putative succinyldiaminopimelate transaminase DapC;
Pssm-ID: 236095 [Multi-domain] Cd Length: 387 Bit Score: 86.63 E-value: 2.62e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 146 GLPVLREAIARRYSER-GLPTRPD-EVMVVNGALSAFALILRLFTGPGDRVVIDAPTYP--MAISAIQGASCRPVGVALP 221
Cdd:PRK07777 62 GIPELRAAIAAQRRRRyGLEYDPDtEVLVTVGATEAIAAAVLGLVEPGDEVLLIEPYYDsyAAVIAMAGAHRVPVPLVPD 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 222 QQGW--DCDGLAATIaqtAPRL-AWLMPDFHNPTGRCMdapTRQRVADIA--ARTRTTLVI-DETMADLWYNAPPPPPLA 295
Cdd:PRK07777 142 GRGFalDLDALRAAV---TPRTrALIVNSPHNPTGTVL---TAAELAAIAelAVEHDLLVItDEVYEHLVFDGARHLPLA 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 296 SFnPDAA--VLTIGSAGKSF-WGGLRIGWIRASARTIASLIQARDSLDL--GTPLleQLACSWLLENAATLLPPRRDMLK 370
Cdd:PRK07777 216 TL-PGMRerTVTISSAAKTFnVTGWKIGWACGPAPLIAAVRAAKQYLTYvgGAPF--QPAVAHALDHEDAWVAALRDSLQ 292
|
....
gi 490244489 371 ARRD 374
Cdd:PRK07777 293 AKRD 296
|
|
| YhcF |
COG1725 |
DNA-binding transcriptional regulator YhcF, GntR family [Transcription]; |
20-90 |
2.57e-17 |
|
DNA-binding transcriptional regulator YhcF, GntR family [Transcription];
Pssm-ID: 441331 [Multi-domain] Cd Length: 114 Bit Score: 77.53 E-value: 2.57e-17
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490244489 20 ETSSRTPLWRQLAEALRLLILDGRLTLQTRLPGERELAAALNVSRTTIASALGQLREEGFLYSRQGSGSRI 90
Cdd:COG1725 4 DFDSGVPIYEQIADQIKEAIASGELKPGDRLPSVRELAAELGVNPNTVAKAYRELEDEGLIETRRGKGTFV 74
|
|
| PRK09148 |
PRK09148 |
LL-diaminopimelate aminotransferase; |
145-451 |
2.67e-17 |
|
LL-diaminopimelate aminotransferase;
Pssm-ID: 181674 [Multi-domain] Cd Length: 405 Bit Score: 83.58 E-value: 2.67e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 145 QGLPVLREAIARRYSER-GLPTRPD-EVMVVNGALSAFALILRLFTGPGDRVVIDAPTYPmaISA----IQGASCRPVGV 218
Cdd:PRK09148 68 KGIPGLRRAQAAYYARRfGVKLNPDtQVVATLGSKEGFANMAQAITAPGDVILCPNPSYP--IHAfgfiMAGGVIRSVPA 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 219 ALPQQGWdcDGLAATIAQTAPRLAWLMPDF-HNPTGRCMDAPTRQRVADIAARTRTTLVIDETMADLWYNAPPPPPLASF 297
Cdd:PRK09148 146 EPDEEFF--PALERAVRHSIPKPIALIVNYpSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQV 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 298 nPDAAVLTI--GSAGKSF-WGGLRIGWIRASARTIASLIQARDSLDLG--TPLleQLACSWLLENAATLLPPRRDMLKAR 372
Cdd:PRK09148 224 -PGAKDVTVefTSMSKTFsMAGWRMGFAVGNERLIAALTRVKSYLDYGafTPI--QVAATAALNGPQDCIAEMRELYKKR 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 373 RDMcetlMAEYFPR--WRFSPPEGGLSFWVELPDMLATL----FSAR-AESQGIHIGTGTRFGLEGafDRYLRLPFTLPD 445
Cdd:PRK09148 301 RDV----LVESFGRagWDIPPPAASMFAWAPIPEAFRHLgsleFSKLlVEKADVAVAPGVGFGEHG--DGYVRIALVENE 374
|
....*.
gi 490244489 446 EALRRA 451
Cdd:PRK09148 375 QRIRQA 380
|
|
| PRK08363 |
PRK08363 |
alanine aminotransferase; Validated |
143-456 |
4.70e-17 |
|
alanine aminotransferase; Validated
Pssm-ID: 181402 Cd Length: 398 Bit Score: 82.93 E-value: 4.70e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 143 DQQGLPVLREAIARRYSER-GLPTRPDEVMVVNGALSAFALILRLFTGPGDRVVIDAPTYPMAISAIQGASCRPVG-VAL 220
Cdd:PRK08363 68 PSEGLPELREAIVKREKRKnGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILIPGPSYPPYTGLVKFYGGVPVEyRTI 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 221 PQQGW--DCDGLAATIAQTAPRLAWLMPdfHNPTGRCMDAPTRQRVADIAARTRTTLVIDETMADLWYNAPPPPPlASFN 298
Cdd:PRK08363 148 EEEGWqpDIDDIRKKITEKTKAIAVINP--NNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHVSP-GSLT 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 299 PDAAVLTIGSAGKSFWG-GLRIGWI--RASARTIASLIQARDSLDL-----GTPLleQLACSWLLENAATLLPPRRDMLK 370
Cdd:PRK08363 225 KDVPVIVMNGLSKVYFAtGWRLGYIyfVDPEGKLAEVREAIDKLARirlcpNTPA--QFAAIAGLTGPMDYLEEYMKKLK 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 371 ARRDMCETLMAEyFPRWRFSPPEGglSFWV-----ELPDMLATLFSARA-ESQGIHIGTGTRFGLEGAfdRYLRLPFTLP 444
Cdd:PRK08363 303 ERRDYIYKRLNE-IPGISTTKPQG--AFYIfprieEGPWKDDKEFVLDVlHEAHVLFVHGSGFGEYGA--GHFRLVFLPP 377
|
330
....*....|..
gi 490244489 445 DEALRRAFSTLQ 456
Cdd:PRK08363 378 VEILEEAMDRFE 389
|
|
| tyr_amTase_E |
TIGR01264 |
tyrosine aminotransferase, eukaryotic; This model describes tyrosine aminotransferase as found ... |
93-456 |
1.58e-15 |
|
tyrosine aminotransferase, eukaryotic; This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. [Energy metabolism, Amino acids and amines]
Pssm-ID: 273529 [Multi-domain] Cd Length: 401 Bit Score: 78.29 E-value: 1.58e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 93 PERPAdLPLPAGISSTL-NLSTAalsagPEVHQAFQHAmtllppyLAQTGYD----QQGLPVLREAIARRYSERGLPTRP 167
Cdd:TIGR01264 29 PEKPM-IKLSIGDPTVFgNLPTD-----PEVMQAMKDS-------LDSGKYNgyapTVGALSAREAIASYYHNPDGPIEA 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 168 DEVMVVNGALSAFALILRLFTGPGDRVVIDAPTYPMAISAiqgasCRPVGVA------LPQQGW--DCDGLAATIAQTAP 239
Cdd:TIGR01264 96 DDVVLCSGCSHAIEMCIAALANAGQNILVPRPGFPLYETL-----AESMGIEvklynlLPDKSWeiDLKQLESLIDEKTA 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 240 RLAWLMPDfhNPTGRCMDAPTRQRVADIAARTRTTLVIDETMADLWYNAPPPPPLASFNPDAAVLTIGSAGKSFW-GGLR 318
Cdd:TIGR01264 171 ALIVNNPS--NPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLASLSSTVPILSCGGLAKRWLvPGWR 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 319 IGWI-----RASARTIASLIQARDSLDLGTPLLEQLAC-SWLLENAATLLPPRRDMLKARRDMCETLMAEyFPRWRFSPP 392
Cdd:TIGR01264 249 LGWIiihdrRGILRDIRDGLVKLSQRILGPCTIVQGALpSILLRTPQEYFDGTLSVLESNAMLCYGALAA-VPGLRPVMP 327
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490244489 393 EGGLSFWVEL-----PDMLA-TLFSAR-AESQGIHIGTGTRFGLEGafdrYLRLPFTLPDEALRRAFSTLQ 456
Cdd:TIGR01264 328 SGAMYMMVGIemehfPEFKNdVEFTERlVAEQSVFCLPGSCFEYPG----FFRVVLTVPVVMMEEACSRIQ 394
|
|
| PRK06348 |
PRK06348 |
pyridoxal phosphate-dependent aminotransferase; |
122-458 |
8.46e-15 |
|
pyridoxal phosphate-dependent aminotransferase;
Pssm-ID: 180537 Cd Length: 384 Bit Score: 75.91 E-value: 8.46e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 122 VHQAFQHAMTllppylAQTGY-DQQGLPVLREAIARRYSER-GLPTRPDEVMVVNGALSAFALILRLFTGPGDRVVIDAP 199
Cdd:PRK06348 48 INAAFEDAKK------GHTRYtDSGGDVELIEEIIKYYSKNyDLSFKRNEIMATVGACHGMYLALQSILDPGDEVIIHEP 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 200 TYPMAISAIQGASCRPVGV-ALPQQGW--DCDGLAATIaqTAPRLAWLMPDFHNPTGRCMDAPTRQRVADIAARTRTTLV 276
Cdd:PRK06348 122 YFTPYKDQIEMVGGKPIILeTYEEDGFqiNVKKLEALI--TSKTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFII 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 277 IDETMADLWYNApPPPPLASFN--PDAAVlTIGSAGKSF-WGGLRIGWIRASARTIASLIQARDSLDLGTPLLEQLACSW 353
Cdd:PRK06348 200 SDEVYDGFSFYE-DFVPMATLAgmPERTI-TFGSFSKDFaMTGWRIGYVIAPDYIIETAKIINEGICFSAPTISQRAAIY 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 354 LLENAATLLPPRRDMLKARRDMCETLMaEYFPRWRFSPPEGGLSFWVELPD--MLATLFSAR--AESQGIHIgTGTRFGL 429
Cdd:PRK06348 278 ALKHRDTIVPLIKEEFQKRLEYAYKRI-ESIPNLSLHPPKGSIYAFINIKKtgLSSVEFCEKllKEAHVLVI-PGKAFGE 355
|
330 340
....*....|....*....|....*....
gi 490244489 430 EGafDRYLRLPFTLPDEALRRAFSTLQPL 458
Cdd:PRK06348 356 SG--EGYIRLACTVGIEVLEEAFNRIEKM 382
|
|
| PRK08636 |
PRK08636 |
LL-diaminopimelate aminotransferase; |
141-451 |
1.68e-14 |
|
LL-diaminopimelate aminotransferase;
Pssm-ID: 236316 Cd Length: 403 Bit Score: 75.13 E-value: 1.68e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 141 GYD-QQGLPVLREAIARRYSER-GLPTRPD-EVMVVNGALSAFALILRLFTGPGDRVVIDAPTYPMAISA--IQGASCRP 215
Cdd:PRK08636 66 GYSvSKGIYKLRLAICNWYKRKyNVDLDPEtEVVATMGSKEGYVHLVQAITNPGDVAIVPDPAYPIHSQAfiLAGGNVHK 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 216 VGVALPQQ-GWDCDG----LAATIAQTAPRLAWLMPDF-HNPTGRCMDAPTRQRVADIAARTRTTLVIDETMADLWYNAP 289
Cdd:PRK08636 146 MPLEYNEDfELDEDQffenLEKALRESSPKPKYVVVNFpHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGY 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 290 PPPPLASFN--PDAAVLTIgSAGKSF-WGGLRIGWIRASARTIASLIQARDSLDLG--TPLleQLACSWLLENAATLLPP 364
Cdd:PRK08636 226 KTPSILEVEgaKDVAVESY-TLSKSYnMAGWRVGFVVGNKKLVGALKKIKSWLDYGmfTPI--QVAATIALDGDQSCVEE 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 365 RRDMLKARRDmcetLMAEYFPR--WRFSPPEGGLSFWVELPDMLATL----FSARAESQG-IHIGTGTRFGLEGafDRYL 437
Cdd:PRK08636 303 IRETYRKRRD----VLIESFANagWELQKPRASMFVWAKIPEPARHLgsleFSKQLLTEAkVAVSPGIGFGEYG--DEYV 376
|
330
....*....|....
gi 490244489 438 RLPFTLPDEALRRA 451
Cdd:PRK08636 377 RIALIENENRIRQA 390
|
|
| PRK07309 |
PRK07309 |
pyridoxal phosphate-dependent aminotransferase; |
146-456 |
1.69e-14 |
|
pyridoxal phosphate-dependent aminotransferase;
Pssm-ID: 235985 Cd Length: 391 Bit Score: 75.15 E-value: 1.69e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 146 GLPVLREAIARRYSER-GLPTRP-DEVMVVNGALSAFALILRLFTGPGDRVVIDAPTYPMAISAIQGASCRPVG------ 217
Cdd:PRK07309 68 GLLELRQAAADFVKEKyNLDYAPeNEILVTIGATEALSASLTAILEPGDKVLLPAPAYPGYEPIVNLVGAEIVEidtten 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 218 --VALPQQgwdcdgLAATIAQTAPRLAWLMPDF-HNPTGRCMDAPTRQRVADIAARTRTTLVIDETMADLWYNAPPPPPL 294
Cdd:PRK07309 148 dfVLTPEM------LEKAILEQGDKLKAVILNYpANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSI 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 295 ASFNPDAAVLTIGSAGKSFWGGLRIGWIRASARTIASLIQARDSLDLGTPLLEQLACSWLLENAATLLPPRRDMLKARRD 374
Cdd:PRK07309 222 AEYLPDQTILINGLSKSHAMTGWRIGLIFAPAEFTAQLIKSHQYLVTAATTMAQFAAVEALTNGKDDALPMKKEYIKRRD 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 375 -MCETLMAEYFprwRFSPPEGGLSFWVELPDMLA----TLFSARAESQGIHIGTGTRFGLEGafDRYLRLPFTLPDEALR 449
Cdd:PRK07309 302 yIIEKMTDLGF---KIIKPDGAFYIFAKIPAGYNqdsfKFLQDFARKKAVAFIPGAAFGPYG--EGYVRLSYAASMETIK 376
|
....*..
gi 490244489 450 RAFSTLQ 456
Cdd:PRK07309 377 EAMKRLK 383
|
|
| PRK09276 |
PRK09276 |
LL-diaminopimelate aminotransferase; Provisional |
120-458 |
2.33e-14 |
|
LL-diaminopimelate aminotransferase; Provisional
Pssm-ID: 181749 Cd Length: 385 Bit Score: 74.56 E-value: 2.33e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 120 PEVHQafqhamtlLPPYlaqtgydqQGLPVLREAIARRYSER-GLPTRPD-EVMVVNGALSAFALILRLFTGPGDRVVID 197
Cdd:PRK09276 60 PENHQ--------YPSY--------EGMLEFRKAVADWYKRRfGVELDPEtEVISLIGSKEGIAHIPLAFVNPGDVVLVP 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 198 APTYPM-AISAIQgASCRPVGVAL-PQQGW--DCDGLAATIAQTApRLAWL-MPDfhNPTGRCMDAPTRQRVADIAARTR 272
Cdd:PRK09276 124 DPGYPVyKIGTIF-AGGEPYFMPLkEENGFlpDLDAIPEDVAKKA-KLMFInYPN--NPTGAVADLEFFEEVVDFAKKYD 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 273 TTLVIDETMADLWYNAPPPPPLASFnPDAAVLTI--GSAGKSF-WGGLRIGWIRASARTIASLIQARDSLDLGTPLLEQL 349
Cdd:PRK09276 200 IIVCHDAAYSEIAYDGYKPPSFLEV-PGAKDVGIefHSLSKTYnMTGWRIGFAVGNADLIAGLGKVKSNVDSGVFQAIQE 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 350 ACSWLLENAATLLPPRRDMLKARRD-MCETL--MAeyfprWRFSPPEGGLSFWVELPD-MLATLFSARA-ESQGIHIGTG 424
Cdd:PRK09276 279 AGIAALNGPQEVVEELRKIYQERRDiLVEGLrkLG-----LEVEPPKATFYVWAPVPKgYTSAEFATLLlDKAGVVVTPG 353
|
330 340 350
....*....|....*....|....*....|....
gi 490244489 425 TRFGLEGafDRYLRLPFTLPDEALRRAFSTLQPL 458
Cdd:PRK09276 354 NGFGEYG--EGYFRIALTVPDERIEEAVERIKKL 385
|
|
| hisC |
TIGR01141 |
histidinol-phosphate aminotransferase; Alternate names: histidinol-phosphate transaminase; ... |
150-382 |
2.83e-14 |
|
histidinol-phosphate aminotransferase; Alternate names: histidinol-phosphate transaminase; imidazole acetol-phosphate transaminase Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. [Amino acid biosynthesis, Histidine family]
Pssm-ID: 273467 Cd Length: 350 Bit Score: 73.84 E-value: 2.83e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 150 LREAIARRYSerglpTRPDEVMVVNGALSAFALILRLFTGPGDRVVIDAPTYPM-AISA-IQGASCRPVgvalPQQGWDC 227
Cdd:TIGR01141 60 LKQALADYYG-----VDPEQILLGNGSDEIIDLLIRAFLEPGDAVLVPPPTYSMyEISAkIHGAEVVKV----PLDEDGQ 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 228 DGLAA--TIAQTAPRLAWL-MPdfHNPTGRCMDAPTRQRVADIAArTRTTLVIDETmadlwYN----APPPPPLASFNPD 300
Cdd:TIGR01141 131 LDLEDilVAIDDKPKLVFLcSP--NNPTGNLFSRGDIEAVLERTP-GDALVVVDEA-----YGefsgEPSTLPLLAEYPN 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 301 AAVLtiGSAGKSF-WGGLRIGWIRASARTIASLIQARDSLDLGTPLLEqLACSwLLENAATLLpPRRDMLKARRDMCETL 379
Cdd:TIGR01141 203 LIVL--RTLSKAFgLAGLRIGYAIANAEIIDALNKVRAPFNLSRLAQA-AAIA-ALRDDDFIE-ATVEEINAERERLYDG 277
|
...
gi 490244489 380 MAE 382
Cdd:TIGR01141 278 LKK 280
|
|
| PRK08912 |
PRK08912 |
aminotransferase; |
140-374 |
3.26e-14 |
|
aminotransferase;
Pssm-ID: 181580 Cd Length: 387 Bit Score: 73.86 E-value: 3.26e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 140 TGYDQ----QGLPVLREAIARRYSE-RGLPTRPD-EVMVVNGALSAFALILRLFTGPGDRVVIDAPTYPMAISAIQGASC 213
Cdd:PRK08912 54 DGSNQyppmMGLPELRQAVAAHYARfQGLDLDPEtEVMVTSGATEALAAALLALVEPGDEVVLFQPLYDAYLPLIRRAGG 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 214 RPVGVALPQQGWDCDGLAATIAQTAPRLAWLMPDFHNPTGRCMDAPTRQRVADIAARTRTTLVIDETMADLWYNAPPPPP 293
Cdd:PRK08912 134 VPRLVRLEPPHWRLPRAALAAAFSPRTKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIP 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 294 LASFnPDAA--VLTIGSAGKSF-WGGLRIGWIRASARTIASLIQARDSLDLGTPLLEQLACSWLLENAATLLPPRRDMLK 370
Cdd:PRK08912 214 LMTL-PGMRerTVKIGSAGKIFsLTGWKVGFVCAAPPLLRVLAKAHQFLTFTTPPNLQAAVAYGLGKPDDYFEGMRADLA 292
|
....
gi 490244489 371 ARRD 374
Cdd:PRK08912 293 RSRD 296
|
|
| GntR |
pfam00392 |
Bacterial regulatory proteins, gntR family; This family of regulatory proteins consists of the ... |
27-90 |
3.54e-14 |
|
Bacterial regulatory proteins, gntR family; This family of regulatory proteins consists of the N-terminal HTH region of GntR-like bacterial transcription factors. At the C-terminus there is usually an effector-binding/oligomerization domain. The GntR-like proteins include the following sub-families: MocR, YtrR, FadR, AraR, HutC and PlmA, DevA, DasR. Many of these proteins have been shown experimentally to be autoregulatory, enabling the prediction of operator sites and the discovery of cis/trans relationships. The DasR regulator has been shown to be a global regulator of primary metabolism and development in Streptomyces coelicolor.
Pssm-ID: 306822 [Multi-domain] Cd Length: 64 Bit Score: 66.87 E-value: 3.54e-14
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 490244489 27 LWRQLAEALRLLILDGRLTLQTRLPGERELAAALNVSRTTIASALGQLREEGFLYSRQGSGSRI 90
Cdd:pfam00392 1 LYEQVYARLREDILSGRLRPGDKLPSERELAAEFGVSRTTVREALRRLEAEGLVERRQGRGTFV 64
|
|
| PRK06836 |
PRK06836 |
pyridoxal phosphate-dependent aminotransferase; |
120-464 |
3.82e-14 |
|
pyridoxal phosphate-dependent aminotransferase;
Pssm-ID: 180720 Cd Length: 394 Bit Score: 73.69 E-value: 3.82e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 120 PEVHQAFQHAMTLLPPYLAqtGYDQ-QGLPVLREAIARRYSER-GLPTRPDEVMVVNGALSAFALILRLFTGPGDRVVID 197
Cdd:PRK06836 49 AAVKEALRELAEEEDPGLH--GYMPnAGYPEVREAIAESLNRRfGTPLTADHIVMTCGAAGALNVALKAILNPGDEVIVF 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 198 APTYPMAISAIQGASCRPVGVALPQQGW--DCDGLAATIaqTAPRLAWLMPDFHNPTGRCMDAPTRQRVADIAART---- 271
Cdd:PRK06836 127 APYFVEYRFYVDNHGGKLVVVPTDTDTFqpDLDALEAAI--TPKTKAVIINSPNNPTGVVYSEETLKALAALLEEKskey 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 272 -RTTLVI-DETMADLWY---NAPPPPPLASFnpdaaVLTIGSAGKSF-WGGLRIGWIRASART------IASLIQArdSL 339
Cdd:PRK06836 205 gRPIYLIsDEPYREIVYdgaEVPYIFKYYDN-----SIVVYSFSKSLsLPGERIGYIAVNPEMedaddlVAALVFA--NR 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 340 DLG---TPLLEQLACSWLLENAATLlpprrDMLKARRD-MCETLMAEYFprwRFSPPEGGLSFWVELPDMLATLFSARAE 415
Cdd:PRK06836 278 ILGfvnAPALMQRVVAKCLDATVDV-----SIYKRNRDlLYDGLTELGF---ECVKPQGAFYLFPKSPEEDDVAFCEKAK 349
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 490244489 416 SQGIHIGTGTRFGLEGafdrYLRLPFTLPDEALRRAFstlqPLWQSLAE 464
Cdd:PRK06836 350 KHNLLLVPGSGFGCPG----YFRLSYCVDTETIERSL----PAFEKLAK 390
|
|
| FadR |
COG2186 |
DNA-binding transcriptional regulator, FadR family [Transcription]; |
23-90 |
8.14e-14 |
|
DNA-binding transcriptional regulator, FadR family [Transcription];
Pssm-ID: 441789 [Multi-domain] Cd Length: 232 Bit Score: 70.73 E-value: 8.14e-14
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 490244489 23 SRTPLWRQLAEALRLLILDGRLTLQTRLPGERELAAALNVSRTTIASALGQLREEGFLYSRQGSGSRI 90
Cdd:COG2186 4 RRRSLAEQVAEQLRELILSGELKPGDRLPSERELAEQLGVSRTTVREALRALEALGLVEVRQGGGTFV 71
|
|
| PRK06107 |
PRK06107 |
aspartate transaminase; |
146-339 |
8.26e-14 |
|
aspartate transaminase;
Pssm-ID: 180403 Cd Length: 402 Bit Score: 72.85 E-value: 8.26e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 146 GLPVLREAIARRYSER-GLPTRPDEVMVVNGALSAFALILRLFTGPGDRVVIDAP---TYPMAISAIQGascRPVGVALP 221
Cdd:PRK06107 71 GTPALRKAIIAKLERRnGLHYADNEITVGGGAKQAIFLALMATLEAGDEVIIPAPywvSYPDMVLANDG---TPVIVACP 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 222 Q-QGWDC--DGLAATIaqtAPRLAWLM---PDfhNPTGRCMDAPTRQRVADIAARTRTTLVI-DETMADLWYNAPPPPPL 294
Cdd:PRK06107 148 EeQGFKLtpEALEAAI---TPRTRWLIlnaPS--NPTGAVYSRAELRALADVLLRHPHVLVLtDDIYDHIRFDDEPTPHL 222
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 490244489 295 ASFNPDAA--VLTIGSAGKSF-WGGLRIGWIRASartiASLIQARDSL 339
Cdd:PRK06107 223 LAAAPELRdrVLVTNGVSKTYaMTGWRIGYAAGP----ADLIAAINKL 266
|
|
| PRK08960 |
PRK08960 |
pyridoxal phosphate-dependent aminotransferase; |
146-374 |
9.14e-14 |
|
pyridoxal phosphate-dependent aminotransferase;
Pssm-ID: 181595 Cd Length: 387 Bit Score: 72.78 E-value: 9.14e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 146 GLPVLREAIARRYSER-GLPTRPDEVMVVNGALSAFALILRLFTGPGDRVVIDAPTYPMA---ISAIQG-ASCRPVG--- 217
Cdd:PRK08960 70 GLPALREAIAGFYAQRyGVDVDPERILVTPGGSGALLLASSLLVDPGKHWLLADPGYPCNrhfLRLVEGaAQLVPVGpds 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 218 -----VALPQQGWDCDGLAATIAQTAprlawlmpdfhNPTGRCMDAPTRQRVADIAARTRTTLVIDETMADLWYNAPPPP 292
Cdd:PRK08960 150 ryqltPALVERHWNADTVGALVASPA-----------NPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDAAS 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 293 PLASfnpDAAVLTIGSAGKSF-WGGLRIGWIRASARTIASLIQARDSLDLGTPLLEQ---LACswLLENAATLLPPRRDM 368
Cdd:PRK08960 219 VLEV---DDDAFVLNSFSKYFgMTGWRLGWLVAPPAAVPELEKLAQNLYISASTPAQhaaLAC--FEPETLAILEARRAE 293
|
....*.
gi 490244489 369 LKARRD 374
Cdd:PRK08960 294 FARRRD 299
|
|
| HTH_GNTR |
smart00345 |
helix_turn_helix gluconate operon transcriptional repressor; |
31-90 |
1.51e-13 |
|
helix_turn_helix gluconate operon transcriptional repressor;
Pssm-ID: 197669 [Multi-domain] Cd Length: 60 Bit Score: 65.29 E-value: 1.51e-13
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 31 LAEALRLLILDGRLTLQTRLPGERELAAALNVSRTTIASALGQLREEGFLYSRQGSGSRI 90
Cdd:smart00345 1 VAERLREDIVSGELRPGDKLPSERELAAQLGVSRTTVREALSRLEAEGLVQRRPGSGTFV 60
|
|
| PRK08175 |
PRK08175 |
aminotransferase; Validated |
141-429 |
2.45e-13 |
|
aminotransferase; Validated
Pssm-ID: 181268 [Multi-domain] Cd Length: 395 Bit Score: 71.28 E-value: 2.45e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 141 GYDQ-QGLPVLREAIARRYSER-GLPTRPD-EVMVVNGALSAFALILRLFTGPGDRVVIDAPTYPMAI--SAIQGASCRP 215
Cdd:PRK08175 62 GYSTsRGIPRLRRAISRWYQDRyDVDIDPEsEAIVTIGSKEGLAHLMLATLDHGDTVLVPNPSYPIHIygAVIAGAQVRS 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 216 VGVaLPqqgwDCDGLAA---TIAQTAPRLAWLMPDF-HNPTGRCMDAPTRQRVADIAARTRTTLVIDETMADLWYNAPPP 291
Cdd:PRK08175 142 VPL-VE----GVDFFNElerAIRESYPKPKMMILGFpSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKA 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 292 P-----PLASfnpDAAVLTIgSAGKSF-WGGLRIGWIRASARTIASLIQARDSLDLGTPLLEQLACSWLLENAATLLPPR 365
Cdd:PRK08175 217 PsimqvPGAK---DVAVEFF-TLSKSYnMAGWRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDI 292
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 366 RDMLKARRD-MCETLMAeyfPRWRFSPPEGGLSFWVELPDMLATL----FSAR-------AESQGIHIGT----GTRFGL 429
Cdd:PRK08175 293 AEQYKRRRDvLVKGLHE---AGWMVEMPKASMYVWAKIPEPYAAMgsleFAKKllneakvCVSPGIGFGDygdtHVRFAL 369
|
|
| PLN02656 |
PLN02656 |
tyrosine transaminase |
146-321 |
3.77e-13 |
|
tyrosine transaminase
Pssm-ID: 178262 [Multi-domain] Cd Length: 409 Bit Score: 71.11 E-value: 3.77e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 146 GLPVLREAIARrYSERGLPTR--PDEVMVVNGALSAFALILRLFTGPGDRVVIDAPTYPM--AISAIQGASCRPVGVaLP 221
Cdd:PLN02656 74 GLPQARRAIAE-YLSRDLPYKlsLDDVFITSGCTQAIDVALSMLARPGANILLPRPGFPIyeLCAAFRHLEVRYVDL-LP 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 222 QQGW--DCDGLAATIAQTAPRLAWLMPDfhNPTGRCMDAPTRQRVADIAARTRTTLVIDETMADLWYNAPPPPPLASFNP 299
Cdd:PLN02656 152 EKGWevDLDAVEALADQNTVALVIINPG--NPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGS 229
|
170 180
....*....|....*....|....
gi 490244489 300 DAAVLTIGSAGKSfW--GGLRIGW 321
Cdd:PLN02656 230 IVPVLTLGSLSKR-WivPGWRLGW 252
|
|
| PRK05957 |
PRK05957 |
pyridoxal phosphate-dependent aminotransferase; |
108-456 |
4.79e-13 |
|
pyridoxal phosphate-dependent aminotransferase;
Pssm-ID: 235654 Cd Length: 389 Bit Score: 70.49 E-value: 4.79e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 108 TLNLSTAALSAGPEVHqafqhAMTLLPPYLAQTGYDQ----QGLPVLREAIARRYS-ERGLPTRPDE-VMVVNGALSAFA 181
Cdd:PRK05957 29 TISLGQGVVSYPPPPE-----AIEALNNFLANPENHKyqavQGIPPLLEAITQKLQqDNGIELNNEQaIVVTAGSNMAFM 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 182 LILRLFTGPGDRVVIDAPTYPMAISAIQGASCRPVGVALPQQ-GWDCDGLAATIAQTAPRLAWLMPDfhNPTGRCMDAPT 260
Cdd:PRK05957 104 NAILAITDPGDEIILNTPYYFNHEMAITMAGCQPILVPTDDNyQLQPEAIEQAITPKTRAIVTISPN--NPTGVVYPEAL 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 261 RQRVADIAARTRTTLVIDETMADLWYNAPPPPPLASFnPDAAVLTIG--SAGKSF-WGGLRIGWIRASARTIASLIQARD 337
Cdd:PRK05957 182 LRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSI-PGSGNHTISlySLSKAYgFASWRIGYMVIPIHLLEAIKKIQD 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 338 SLDLGTPLLEQLAC--------SWLLENAATLLPPRRDMLKARR---DMCetlmaeyfprwRFSPPEGGLSFWVE----L 402
Cdd:PRK05957 261 TILICPPVVSQYAAlgalqvgkSYCQQHLPEIAQVRQILLKSLGqlqDRC-----------TLHPANGAFYCFLKvntdL 329
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 490244489 403 PDMlaTLFSARAESQGIHIGTGTRFGLEGAFdrYLRLPF-TLPDEALRRAFSTLQ 456
Cdd:PRK05957 330 NDF--ELVKQLIREYRVAVIPGTTFGMKNGC--YLRIAYgALQKATAKEGIERLV 380
|
|
| PRK07324 |
PRK07324 |
transaminase; Validated |
145-467 |
6.15e-13 |
|
transaminase; Validated
Pssm-ID: 235989 Cd Length: 373 Bit Score: 69.97 E-value: 6.15e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 145 QGLPVLREAIARRYSErglpTRPDEVMVVNGALSAFALILRLFTGPGDRVVIDAPTYpmaisaiqgascrpvgvalpQQG 224
Cdd:PRK07324 62 EGSPEFKEAVASLYQN----VKPENILQTNGATGANFLVLYALVEPGDHVISVYPTY--------------------QQL 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 225 WDC-DGLAAT--IAQTAPRLAWLmPDF-------------------HNPTGRCMDAPTRQRVADIAARTRTTLVIDETma 282
Cdd:PRK07324 118 YDIpESLGAEvdYWQLKEENGWL-PDLdelrrlvrpntklicinnaNNPTGALMDRAYLEEIVEIARSVDAYVLSDEV-- 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 283 dlwYNappppPLASFNPDAAV-------LTIGSAGKSF-WGGLRIGWIRASARTIASLIQARDSLDLGTPLLEQLACSWL 354
Cdd:PRK07324 195 ---YR-----PLDEDGSTPSIadlyekgISTNSMSKTYsLPGIRVGWIAANEEVIDILRKYRDYTMICAGVFDDMLASLA 266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 355 LENAATLLPPRRDMLKARRDMCETLMAEYfPRWRFSPPEGGLSFWVELP-DMLATLFSAR-AESQGIHIGTGTRFGLEGa 432
Cdd:PRK07324 267 LEHRDAILERNRKIVRTNLAILDEWVAKE-PRVSYVKPKAVSTSFVKLDvDMPSEDFCLKlLKETGVLLVPGNRFDLEG- 344
|
330 340 350
....*....|....*....|....*....|....*
gi 490244489 433 fdrYLRLPFTLPDEALRRAfstLQPLWQSLAEQKE 467
Cdd:PRK07324 345 ---HVRIGYCCDTETLKKG---LKKLSEFLREFDS 373
|
|
| PRK08361 |
PRK08361 |
aspartate aminotransferase; Provisional |
146-456 |
1.68e-12 |
|
aspartate aminotransferase; Provisional
Pssm-ID: 236248 [Multi-domain] Cd Length: 391 Bit Score: 68.75 E-value: 1.68e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 146 GLPVLREAIARRYSE-RGLPTRPDEVMVVNGALSAFALILRLFTGPGDRVVIDAPTYPMAISAIQGASCRPVGVALPQQG 224
Cdd:PRK08361 71 GIPELREAIAEYYKKfYGVDVDVDNVIVTAGAYEATYLAFESLLEEGDEVIIPDPAFVCYVEDAKIAEAKPIRIPLREEN 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 225 ---WDCDGLAATIAQTAPRLAWLMPDfhNPTGRCMDAPTRQRVADIAARTRTTLVIDETMADLWYNAPPPPPLASFNPDA 301
Cdd:PRK08361 151 efqPDPDELLELITKRTRMIVINYPN--NPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDN 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 302 AVLTiGSAGKSF-WGGLRIGWIRASARTIASLIQARDSLDLGTPLLEQLAC--------SW-LLENAATLLPPRRDM-LK 370
Cdd:PRK08361 229 TILA-NSFSKTFaMTGWRLGFVIAPEQVIKDMIKLHAYIIGNVASFVQIAGiealrskeSWkAVEEMRKEYNERRKLvLK 307
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 371 ARRDMcetlmaeyfPRWRFSPPEGGLSFWVELP--DMLATLFSA-RAESQGIHIGTGTRFGLEGafDRYLRLPFTLPDEA 447
Cdd:PRK08361 308 RLKEM---------PHIKVFEPKGAFYVFANIDetGMSSEDFAEwLLEKARVVVIPGTAFGKAG--EGYIRISYATSKEK 376
|
....*....
gi 490244489 448 LRRAFSTLQ 456
Cdd:PRK08361 377 LIEAMERME 385
|
|
| PRK07337 |
PRK07337 |
pyridoxal phosphate-dependent aminotransferase; |
109-374 |
4.47e-12 |
|
pyridoxal phosphate-dependent aminotransferase;
Pssm-ID: 180937 Cd Length: 388 Bit Score: 67.39 E-value: 4.47e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 109 LNLSTAALSAGPEVHQAFQHAMTLlppylAQTGYDQQ-GLPVLREAIARRYSER-GLPTRPDEVMVVNGALSAFALILRL 186
Cdd:PRK07337 35 MGIGEPDFTAPEPVVEAAARALRR-----GVTQYTSAlGLAPLREAIAAWYARRfGLDVAPERIVVTAGASAALLLACLA 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 187 FTGPGDRVVIDAPTYPMAISAIQGASCRPVGV-ALPQQGWDCDglAATIAQtaprlAW-------LMPDFHNPTGRCMDA 258
Cdd:PRK07337 110 LVERGDEVLMPDPSYPCNRHFVAAAEGRPVLVpSGPAERFQLT--AADVEA-----AWgertrgvLLASPSNPTGTSIAP 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 259 PTRQRVADiAARTRTTL-VIDETMADLWYNAPPPPPLAsFNPDaaVLTIGSAGKSF-WGGLRIGWIRASARTIASLIQAR 336
Cdd:PRK07337 183 DELRRIVE-AVRARGGFtIVDEIYQGLSYDAAPVSALS-LGDD--VITINSFSKYFnMTGWRLGWLVVPEALVGTFEKLA 258
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 490244489 337 DSLDLGTPLLEQ---LAC---SWLLENAAtllppRRDMLKARRD 374
Cdd:PRK07337 259 QNLFICASALAQhaaLACfepDTLAIYER-----RRAEFKRRRD 297
|
|
| PLN00143 |
PLN00143 |
tyrosine/nicotianamine aminotransferase; Provisional |
146-465 |
4.83e-12 |
|
tyrosine/nicotianamine aminotransferase; Provisional
Pssm-ID: 165711 [Multi-domain] Cd Length: 409 Bit Score: 67.34 E-value: 4.83e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 146 GLPVLREAIARrYSERGLPTR--PDEVMVVNGALSAFALILRLFTGPGDRVVIDAPTYPM--AISAIQGASCRPVGVaLP 221
Cdd:PLN00143 75 GILPARRAIAD-YLSNDLPYQlsPDDVYLTLGCKHAAEIIIKVLARPEANILLPRPGFPDveTYAIFHHLEIRHFDL-LP 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 222 QQGWDCDGLAATIAQTAPRLAWLMPDFHNPTGRCMDAPTRQRVADIAARTRTTLVIDETMADLWYNAPPPPPLASFNPDA 301
Cdd:PLN00143 153 EKGWEVDLDAVEAIADENTIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIV 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 302 AVLTIGSAGKSFW-GGLRIGWIRASART-------IASLIQARDSLDLGTPLLEQLACSWLLENAAT-LLPPRRDMLKAR 372
Cdd:PLN00143 233 PVITLGSISKRWMiPGWGLGWLVTCDPSgllqiceIADSIKKALNPAPFPPTFIQAAIPEILEKTTEdFFSKTINILRAA 312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 373 RDMCETLMAEYFPRWRFSPPEGGLSFWVEL---------PDMLATLFSARAESqgIHIGTGTRFGLEGafdrYLRLPFTL 443
Cdd:PLN00143 313 LAFCYDKLKEIPCIMCPQKAEGAFFALVKLnlllledieDDMEFCLKLAKEES--LIILPGVTVGLKN----WLRITFAV 386
|
330 340
....*....|....*....|..
gi 490244489 444 PDEALRRAFSTLQPLWQSLAEQ 465
Cdd:PLN00143 387 EQSSLEDGLGRLKSFCGRHAKK 408
|
|
| PRK07568 |
PRK07568 |
pyridoxal phosphate-dependent aminotransferase; |
145-403 |
5.82e-12 |
|
pyridoxal phosphate-dependent aminotransferase;
Pssm-ID: 181036 Cd Length: 397 Bit Score: 67.18 E-value: 5.82e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 145 QGLPVLREAIARRYSERGLPTRPDEVMVVNGALSA--FALIlrLFTGPGDRVVIDAPTYP--MAISAIQGASCRPV---- 216
Cdd:PRK07568 66 QGIPELREAFAKYYKKWGIDVEPDEILITNGGSEAilFAMM--AICDPGDEILVPEPFYAnyNGFATSAGVKIVPVttki 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 217 --GVALPQqgwdcdgLAATIAQTAPRL-AWLMPDFHNPTGRCMDAPTRQRVADIAARTRTTLVIDETMADLWYNAPPPPP 293
Cdd:PRK07568 144 eeGFHLPS-------KEEIEKLITPKTkAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTS 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 294 LASFnPDAA--VLTIGSAGKSFWG-GLRIGWI----RASARTIASLIQARdsldLGTPLLEQLACSWLLENAATLLPPRR 366
Cdd:PRK07568 217 ALSL-EGLEdrVIIIDSVSKRYSAcGARIGCLisknKELIAAAMKLCQAR----LSPPTLEQIGAAALLDTPESYFDEVR 291
|
250 260 270
....*....|....*....|....*....|....*...
gi 490244489 367 DMLKARRD-MCETLMAeyFPRWRFSPPEGGLSFWVELP 403
Cdd:PRK07568 292 EEYKKRRDiLYEELNK--IPGVVCEKPKGAFYIIAKLP 327
|
|
| PRK06225 |
PRK06225 |
pyridoxal phosphate-dependent aminotransferase; |
145-452 |
1.13e-11 |
|
pyridoxal phosphate-dependent aminotransferase;
Pssm-ID: 235749 [Multi-domain] Cd Length: 380 Bit Score: 66.31 E-value: 1.13e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 145 QGLPVLREAIARrysERGLPtrPDEVMVVNGALSAFALILRLFTGPGDRVVIDAPTY--PMAISAIQGASCRPVGVALPQ 222
Cdd:PRK06225 66 EGFPELRELILK---DLGLD--DDEALITAGATESLYLVMRAFLSPGDNAVTPDPGYliIDNFASRFGAEVIEVPIYSEE 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 223 QGWDC--DGLAATIAQTApRLAWLMpDFHNPTGRCMDAPTRQRVADIAARTRTTLVIDETMADLwynAPPPPPLASFNPD 300
Cdd:PRK06225 141 CNYKLtpELVKENMDENT-RLIYLI-DPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDF---AREHTLAAEYAPE 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 301 AAVlTIGSAGKSF-WGGLRIGWIRASARTIASLIQARDSlDLGTPLLEQLACSWLLENAATLLPPRRD-------MLKAR 372
Cdd:PRK06225 216 HTV-TSYSFSKIFgMAGLRIGAVVATPDLIEVVKSIVIN-DLGTNVIAQEAAIAGLKVKDEWIDRIRRttfknqkLIKEA 293
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 373 RDMCETLmaeYFPRWrfsPPEGglsfwvelpDMLATLFSA---RAES-------QGIHIGTGT----RFGlegafDRYLR 438
Cdd:PRK06225 294 VDEIEGV---FLPVY---PSHG---------NMMVIDISEagiDPEDlveylleRKIFVRQGTytskRFG-----DRYIR 353
|
330
....*....|....*..
gi 490244489 439 LPFTLPDE---ALRRAF 452
Cdd:PRK06225 354 VSFSIPREqveVFCEEF 370
|
|
| PRK05166 |
PRK05166 |
histidinol-phosphate transaminase; |
116-337 |
3.39e-11 |
|
histidinol-phosphate transaminase;
Pssm-ID: 179950 Cd Length: 371 Bit Score: 64.77 E-value: 3.39e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 116 LSAGPEVHQAFQHAMTLLPPYLaqtgyDQQGlPVLREAIARRYserGLPTrpDEVMVVNGALSAFALILRLFTGPGDRVV 195
Cdd:PRK05166 48 LGPSPAVRRAFADIAELLRLYP-----DPQG-RALREAIAART---GVPA--DRIILGNGSEDLIAVICRAVLRPGDRVV 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 196 IDAPTYPM--AISAIQGASCRPVGVAlPQQGWDCDGLAATIAqTAPRLAwLMPDFHNPTGRCMDAPTRQRVADiAARTRT 273
Cdd:PRK05166 117 TLYPSFPLheDYPTMMGARVERVTVT-PDLGFDLDALCAAVA-RAPRML-MFSNPSNPVGSWLTADQLARVLD-ATPPET 192
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 490244489 274 TLVIDETMADlwYNAPPPpplasfNPDAAVLTIGSAG-----KSF---WG--GLRIGW-IRASARTIASLIQARD 337
Cdd:PRK05166 193 LIVVDEAYAE--YAAGDD------YPSALTLLKARGLpwivlRTFskaYGlaGLRVGYgLVSDPELVGLLDRVRT 259
|
|
| PLN00145 |
PLN00145 |
tyrosine/nicotianamine aminotransferase; Provisional |
146-322 |
1.00e-10 |
|
tyrosine/nicotianamine aminotransferase; Provisional
Pssm-ID: 215074 [Multi-domain] Cd Length: 430 Bit Score: 63.64 E-value: 1.00e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 146 GLPVLREAIARrYSERGLPTR--PDEVMVVNGALSAFALILRLFTGPGDRVVIDAPTYPM--AISAIQGASCRPVGVaLP 221
Cdd:PLN00145 95 GLLPARRAIAE-YLSRDLPYElsTDDIYLTAGCAQAIEIIMSVLAQPGANILLPRPGYPLyeARAVFSGLEVRHFDL-LP 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 222 QQGW--DCDGLAA-----TIAQTaprlawlmpdFHNPTGRCMDAPTRQRVADIA--ARTRTTLVI-DETMADLWYNAPPP 291
Cdd:PLN00145 173 ERGWevDLEGVEAladenTVAMV----------IINPNNPCGSVYSYEHLAKIAetARKLGILVIaDEVYDHLTFGSKPF 242
|
170 180 190
....*....|....*....|....*....|...
gi 490244489 292 PPLASFNPDAAVLTIGSAGKSfW--GGLRIGWI 322
Cdd:PLN00145 243 VPMGVFGEVAPVLTLGSISKR-WvvPGWRLGWI 274
|
|
| C_P_lyase_phnF |
TIGR02325 |
phosphonates metabolism transcriptional regulator PhnF; All members of the seed alignment for ... |
20-101 |
2.78e-10 |
|
phosphonates metabolism transcriptional regulator PhnF; All members of the seed alignment for this family are predicted helix-turn-helix transcriptional regulatory proteins of the broader gntR and are found associated with genes for the import and degradation of phosphonates and/or related compounds (e.g. phosphonites) with a direct C-P bond. [Transport and binding proteins, Anions, Regulatory functions, DNA interactions]
Pssm-ID: 131378 [Multi-domain] Cd Length: 238 Bit Score: 60.57 E-value: 2.78e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 20 ETSSRTPLWRQLAEALRLLILDGRLTLQTRLPGERELAAALNVSRTTIASALGQLREEGFLYSRQGSGSRIVlpERPADL 99
Cdd:TIGR02325 2 ERTSGVALWRQIADKIEQEIAAGHLRAGDYLPAEMQLAERFGVNRHTVRRAIAALVERGLLRAEQGRGTFVA--ARRIDY 79
|
..
gi 490244489 100 PL 101
Cdd:TIGR02325 80 PL 81
|
|
| PLN00175 |
PLN00175 |
aminotransferase family protein; Provisional |
146-356 |
4.37e-10 |
|
aminotransferase family protein; Provisional
Pssm-ID: 215089 [Multi-domain] Cd Length: 413 Bit Score: 61.42 E-value: 4.37e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 146 GLPVLREAIARRY-SERGLPTRPD-EVMVVNGALSAFALILRLFTGPGDRVVIDAPTY-------PMAISAIQGASCRPV 216
Cdd:PLN00175 92 GVPELNSAIAERFkKDTGLVVDPEkEVTVTSGCTEAIAATILGLINPGDEVILFAPFYdsyeatlSMAGAKIKTVTLRPP 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 217 GVALPQqgwdcDGLAATIAQTAPrlAWLMPDFHNPTGRCMdapTRQRVADIAARTRTTLVI---DETMADLWYNApPPPP 293
Cdd:PLN00175 172 DFAVPE-----DELKAAFTSKTR--AILINTPHNPTGKMF---TREELELIASLCKENDVLaftDEVYDKLAFEG-DHIS 240
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 490244489 294 LASFnPD--AAVLTIGSAGKSF-WGGLRIGWIRASARTIASLIQARDSLDLGTPLLEQLACSWLLE 356
Cdd:PLN00175 241 MASL-PGmyERTVTMNSLGKTFsLTGWKIGWAIAPPHLTWGVRQAHSFLTFATATPMQWAAVAALR 305
|
|
| PRK09764 |
PRK09764 |
GntR family transcriptional regulator; |
23-88 |
2.83e-09 |
|
GntR family transcriptional regulator;
Pssm-ID: 182065 [Multi-domain] Cd Length: 240 Bit Score: 57.53 E-value: 2.83e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 490244489 23 SRTPLWRQLAEALRLLILDGRLTLQTRLPGERELAAALNVSRTTIASALGQLREEGFLYSRQGSGS 88
Cdd:PRK09764 2 GHKPLYRQIADRIREQIARGELKPGDALPTESALQTEFGVSRVTVRQALRQLVEQQILESIQGSGT 67
|
|
| PRK09265 |
PRK09265 |
aminotransferase AlaT; Validated |
141-321 |
3.54e-09 |
|
aminotransferase AlaT; Validated
Pssm-ID: 181738 Cd Length: 404 Bit Score: 58.67 E-value: 3.54e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 141 GY-DQQGLPVLREAIARRYSERGLP-TRPDEVMVVNGALSAFALILRLFTGPGDRVVIDAPTYPMAISAIQGASCRPVG- 217
Cdd:PRK09265 67 GYsDSKGLFSARKAIMQYYQQKGIPdVDVDDIYIGNGVSELIVMAMQALLNNGDEVLVPAPDYPLWTAAVSLSGGKPVHy 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 218 VALPQQGW--DCDGLAATIAQTAPRLAWLMPDfhNPTGRCMDAPTRQRVADIAARTRTTLVIDETMADLWYNAPPPPPLA 295
Cdd:PRK09265 147 LCDEEAGWfpDLDDIRSKITPRTKAIVIINPN--NPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIA 224
|
170 180
....*....|....*....|....*..
gi 490244489 296 SFNPDAAVLTIGSAGKSF-WGGLRIGW 321
Cdd:PRK09265 225 SLAPDLLCVTFNGLSKAYrVAGFRVGW 251
|
|
| PRK10421 |
PRK10421 |
DNA-binding transcriptional repressor LldR; Provisional |
30-90 |
5.75e-09 |
|
DNA-binding transcriptional repressor LldR; Provisional
Pssm-ID: 236690 [Multi-domain] Cd Length: 253 Bit Score: 56.70 E-value: 5.75e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490244489 30 QLAEALRLLILDGRLTLQTRLPGERELAAALNVSRTTIASALGQLREEGFLYSRQGSGSRI 90
Cdd:PRK10421 6 EVADRVRALIEEKNLEAGMKLPAERQLAMQLGVSRNSLREALAKLVSEGVLLSRRGGGTFI 66
|
|
| PTZ00377 |
PTZ00377 |
alanine aminotransferase; Provisional |
143-321 |
1.07e-08 |
|
alanine aminotransferase; Provisional
Pssm-ID: 240391 [Multi-domain] Cd Length: 481 Bit Score: 57.28 E-value: 1.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 143 DQQGLPVLREAIARRYSER-GLPTRPDEVMVVNGALSAFALILRLFTG-PGDRVVIDAPTYPMAISAIQGASCRPVGVAL 220
Cdd:PTZ00377 113 DSAGYPFVRKAVAAFIERRdGVPKDPSDIFLTDGASSGIKLLLQLLIGdPSDGVMIPIPQYPLYSAAITLLGGKQVPYYL 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 221 PQQ-GWDCD--GLAATIAQ-----TAPR-LAWLMPDfhNPTGRCMDAPTRQRVADIAARTRTTLVIDETMADLWYNapPP 291
Cdd:PTZ00377 193 DEEkGWSLDqeELEEAYEQavrngITPRaLVVINPG--NPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYD--GE 268
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 490244489 292 PPLASF-------NPDAAVLT----IGSAGKSFWG--GLRIGW 321
Cdd:PTZ00377 269 KPFISFrkvllelPAEYNTDVelvsFHSTSKGIIGecGRRGGY 311
|
|
| PRK06855 |
PRK06855 |
pyridoxal phosphate-dependent aminotransferase; |
145-322 |
1.19e-08 |
|
pyridoxal phosphate-dependent aminotransferase;
Pssm-ID: 180734 Cd Length: 433 Bit Score: 56.88 E-value: 1.19e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 145 QGLPVLREAIARRYSER-GLPTRPDEVMVVNGALSAFALILRLFTgPGDRVVIDAPTYPMAISA-IQGASCRPVGVAL-P 221
Cdd:PRK06855 73 KGVLETREFLAELNNKRgGAQITPDDIIFFNGLGDAIAKIYGLLR-REARVIGPSPAYSTHSSAeAAHAGYPPVTYRLdP 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 222 QQGW--DCDGLAATIaQTAPRLAWLM---PDfhNPTGRCMDAPTRQRVADIAARTRTTLVIDETMADLWYNAPPPPPLAS 296
Cdd:PRK06855 152 ENNWypDLDDLENKV-KYNPSIAGILlinPD--NPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSE 228
|
170 180
....*....|....*....|....*..
gi 490244489 297 FNPDAAVLTIGSAGKSF-WGGLRIGWI 322
Cdd:PRK06855 229 VIGDVPGIALKGISKELpWPGSRCGWI 255
|
|
| PRK05942 |
PRK05942 |
aspartate aminotransferase; Provisional |
145-456 |
3.70e-08 |
|
aspartate aminotransferase; Provisional
Pssm-ID: 180317 Cd Length: 394 Bit Score: 55.49 E-value: 3.70e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 145 QGLPVLREAIARRYSER-GLPTRPD-EVMVVNGALSAFALILRLFTGPGDRVVIDAPTYPMAIS--AIQGASCRPVgVAL 220
Cdd:PRK05942 73 EGTASFRQAITDWYHRRyGVELDPDsEALPLLGSKEGLTHLALAYVNPGDVVLVPSPAYPAHFRgpLIAGAQIYPI-ILK 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 221 PQQGW--DCDGLAATIAQTAPRLAWLMPDfhNPTGRCMDAPTRQRVADIAARTRTTLVIDETMADLWYNAPPPPPLASFn 298
Cdd:PRK05942 152 PENDWliDLSSIPEEVAQQAKILYFNYPS--NPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEI- 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 299 PDAAVLTI--GSAGKSF-WGGLRIGWIRASARTIASLIQARDSLDLGTPLLEQLACSWLLENAATLLPPRRDMLKARRDM 375
Cdd:PRK05942 229 PGAKDIGVefHTLSKTYnMAGWRVGFVVGNRHIIQGLRTLKTNLDYGIFSALQKAAETALQLPDSYLQQVQERYRTRRDF 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 376 CETLMAEYfpRWRFSPPEGGLSFWVELP-DMLATLFSARA-ESQGIHIGTGTRFGLEGafDRYLRLPFTLPDEALRRAFS 453
Cdd:PRK05942 309 LIQGLGEL--GWNIPPTKATMYLWVPCPvGMGSTDFALNVlQKTGVVVTPGNAFGEGG--EGYVRISLIADCDRLGEALD 384
|
...
gi 490244489 454 TLQ 456
Cdd:PRK05942 385 RLK 387
|
|
| PRK08153 |
PRK08153 |
pyridoxal phosphate-dependent aminotransferase; |
150-337 |
4.32e-08 |
|
pyridoxal phosphate-dependent aminotransferase;
Pssm-ID: 181255 Cd Length: 369 Bit Score: 55.00 E-value: 4.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 150 LREAIARRYSerglpTRPDEVMVVNGALSAFALILRLFTGPGDRVVIDAPTYPMAISAIQGASCRPVGVALPQQGWDCDG 229
Cdd:PRK08153 72 LRHALAAHHG-----VAPENIMVGEGIDGLLGLIVRLYVEPGDPVVTSLGAYPTFNYHVAGFGGRLVTVPYRDDREDLDA 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 230 LAATIAQTAPRLAWLM-PDfhNPTGRCMDAPTRQRVADIAARTrTTLVIDETMADLwynAPPP--PPLASFNPDaaVLTI 306
Cdd:PRK08153 147 LLDAARRENAPLVYLAnPD--NPMGSWHPAADIVAFIEALPET-TLLVLDEAYCET---APAGaaPPIDTDDPN--VIRM 218
|
170 180 190
....*....|....*....|....*....|..
gi 490244489 307 GSAGKSF-WGGLRIGWIRASARTIASLIQARD 337
Cdd:PRK08153 219 RTFSKAYgLAGARVGYAIGAPGTIKAFDKVRN 250
|
|
| PLN02368 |
PLN02368 |
alanine transaminase |
143-322 |
5.93e-08 |
|
alanine transaminase
Pssm-ID: 177996 [Multi-domain] Cd Length: 407 Bit Score: 54.81 E-value: 5.93e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 143 DQQGLPVLREAIARRYSER-GLPTRPDEVMVVNGALSAFALILR-LFTGPGDRVVIDAPTYPMAISAIQGASCRPVGVAL 220
Cdd:PLN02368 105 DSRGLPGVRKEVAEFIERRdGYPSDPELIFLTDGASKGVMQILNaVIRGEKDGVLVPVPQYPLYSATISLLGGTLVPYYL 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 221 PQQ-GW--DCDGLAATIAQ------TAPRLAWLMPDfhNPTGRCMDAPTRQRVADIAARTRTTLVIDETMADLWYNAPPP 291
Cdd:PLN02368 185 EESeNWglDVNNLRQSVAQarskgiTVRAMVIINPG--NPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNIYQDERP 262
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 490244489 292 ------------PPLASfnpDAAVLTIGSAGKSFWG--GLRIGWI 322
Cdd:PLN02368 263 fisakkvlmdmgPPISK---EVQLVSFHTVSKGYWGecGQRGGYF 304
|
|
| PRK11523 |
PRK11523 |
transcriptional regulator ExuR; |
27-127 |
9.29e-08 |
|
transcriptional regulator ExuR;
Pssm-ID: 183176 [Multi-domain] Cd Length: 253 Bit Score: 52.93 E-value: 9.29e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 27 LWRQLAEALRLLILDGRLTLQTRLPGERELAAALNVSRTTIASALGQLREEGFLYSRQGSGSRiVLPERPADLPLPAGis 106
Cdd:PRK11523 9 LYQQLAAELKERIEQGVYLVGDKLPAERFIADEKNVSRTVVREAIIMLEVEGYVEVRKGSGIH-VVSNQPRHQQAADN-- 85
|
90 100
....*....|....*....|..
gi 490244489 107 stlnlSTAALSAGP-EVHQAFQ 127
Cdd:PRK11523 86 -----NMEFANYGPfELLQARQ 102
|
|
| GntR |
COG1802 |
DNA-binding transcriptional regulator, GntR family [Transcription]; |
19-91 |
9.45e-08 |
|
DNA-binding transcriptional regulator, GntR family [Transcription];
Pssm-ID: 441407 [Multi-domain] Cd Length: 222 Bit Score: 52.62 E-value: 9.45e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 490244489 19 QETSSRTPLWRQLAEALRLLILDGRLTLQTRLPgERELAAALNVSRTTIASALGQLREEGFLYSRQGSGSRIV 91
Cdd:COG1802 4 PSPLRRESLAEQVYEALREAILSGELPPGERLS-EAELAERLGVSRTPVREALRRLEAEGLVEIRPNRGARVA 75
|
|
| PRK09082 |
PRK09082 |
methionine aminotransferase; Validated |
146-279 |
9.71e-08 |
|
methionine aminotransferase; Validated
Pssm-ID: 181642 [Multi-domain] Cd Length: 386 Bit Score: 54.15 E-value: 9.71e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 146 GLPVLREAIARRYSER-GlpTRPD---EVMVVNGALSA-FALILRLfTGPGDRVVIDAPTYPMAISAIQGASCRPVGVAL 220
Cdd:PRK09082 68 GVAALREAIAAKTARLyG--RQYDadsEITVTAGATEAlFAAILAL-VRPGDEVIVFDPSYDSYAPAIELAGGRAVRVAL 144
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490244489 221 PQQGW--DCDGLAATIaqtAPRLAWLMPDF-HNPTGRCMDAPTRQRVADIAARTRTTLVIDE 279
Cdd:PRK09082 145 QPPDFrvDWQRFAAAI---SPRTRLIILNTpHNPSGTVWSAADMRALWQLIAGTDIYVLSDE 203
|
|
| PRK13355 |
PRK13355 |
bifunctional HTH-domain containing protein/aminotransferase; Provisional |
140-327 |
1.12e-07 |
|
bifunctional HTH-domain containing protein/aminotransferase; Provisional
Pssm-ID: 237361 [Multi-domain] Cd Length: 517 Bit Score: 53.97 E-value: 1.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 140 TGY-DQQGLPVLREAIARRYSERGLP-TRPDEVMVVNGALSAFALILRLFTGPGDRVVIDAPTYPMAISAIQGASCRPVG 217
Cdd:PRK13355 179 EGYsDSKGLFSARKAIMQYAQLKGLPnVDVDDIYTGNGVSELINLSMSALLDDGDEVLIPSPDYPLWTACVNLAGGTAVH 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 218 -VALPQQGW--DCDGLAATIAQTAPRLAWLMPDfhNPTGRCMDAPTRQRVADIAARTRTTLVIDETMADLWYNAPPPPPL 294
Cdd:PRK13355 259 yRCDEQSEWypDIDDIRSKITSRTKAIVIINPN--NPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSI 336
|
170 180 190
....*....|....*....|....*....|....
gi 490244489 295 ASFNPDAAVLTIGSAGKSFW-GGLRIGWIRASAR 327
Cdd:PRK13355 337 ASLAPDLFCVTFSGLSKSHMiAGYRIGWMILSGN 370
|
|
| PRK11402 |
PRK11402 |
transcriptional regulator PhoB; |
20-88 |
4.95e-07 |
|
transcriptional regulator PhoB;
Pssm-ID: 183118 [Multi-domain] Cd Length: 241 Bit Score: 50.60 E-value: 4.95e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 490244489 20 ETSSRTPLWRQLAEALRLLILDGRLTLQTRLPGERELAAALNVSRTTIASALGQLREEGFLYSRQGSGS 88
Cdd:PRK11402 3 DRYSHQLLYATVRQRLLDDIAQGVYQAGQQIPTENELCTQYNVSRITIRKAISDLVADGVLIRWQGKGT 71
|
|
| PRK07683 |
PRK07683 |
aminotransferase A; Validated |
146-326 |
1.08e-06 |
|
aminotransferase A; Validated
Pssm-ID: 236075 Cd Length: 387 Bit Score: 50.88 E-value: 1.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 146 GLPVLREAIARRYSER-GLPTRPD-EVMVVNGALSAFALILRLFTGPGDRVVIDAPTYPMAISAIQGASCRPVGVALPQQ 223
Cdd:PRK07683 66 GLLELRKAACNFVKDKyDLHYSPEsEIIVTIGASEAIDIAFRTILEPGTEVILPAPIYPGYEPIIRLCGAKPVFIDTRST 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 224 GWDCDGLAATIAQTAPRLAWLMPDFHNPTGRCMDAPTRQRVADIAARTRTTLVIDETMADLWYNApPPPPLASFN--PDA 301
Cdd:PRK07683 146 GFRLTAEALENAITEKTRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQ-PHTSIAHFPemREK 224
|
170 180
....*....|....*....|....*.
gi 490244489 302 AVLtIGSAGKSF-WGGLRIGWIRASA 326
Cdd:PRK07683 225 TIV-INGLSKSHsMTGWRIGFLFAPS 249
|
|
| pdhR |
PRK09464 |
pyruvate dehydrogenase complex transcriptional repressor PdhR; |
35-88 |
1.28e-06 |
|
pyruvate dehydrogenase complex transcriptional repressor PdhR;
Pssm-ID: 181879 [Multi-domain] Cd Length: 254 Bit Score: 49.63 E-value: 1.28e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 490244489 35 LRLLILDGRLTLQTRLPGERELAAALNVSRTTIASALGQLREEGFLYSRQGSGS 88
Cdd:PRK09464 19 LEFLILEGTLRPGEKLPPERELAKQFDVSRPSLREAIQRLEAKGLLLRRQGGGT 72
|
|
| PRK10225 |
PRK10225 |
Uxu operon transcriptional regulator; |
21-127 |
4.10e-06 |
|
Uxu operon transcriptional regulator;
Pssm-ID: 182318 [Multi-domain] Cd Length: 257 Bit Score: 48.09 E-value: 4.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 21 TSSRTPlWRQLAEALRLLILDGRLTLQTRLPGERELAAALNVSRTTIASALGQLREEGFLYSRQGSGsrIVLPERPADLP 100
Cdd:PRK10225 5 TSAQRP-YQEVGAMIRDLIIKTPYNPGERLPPEREIAEMLDVTRTVVREALIMLEIKGLVEVRRGAG--IYVLDSSGSHN 81
|
90 100
....*....|....*....|....*...
gi 490244489 101 LPAGISSTLNlstaalSAGP-EVHQAFQ 127
Cdd:PRK10225 82 TDSPDANVCN------DAGPfELLQARQ 103
|
|
| PRK09990 |
PRK09990 |
DNA-binding transcriptional regulator GlcC; Provisional |
23-101 |
6.44e-06 |
|
DNA-binding transcriptional regulator GlcC; Provisional
Pssm-ID: 182186 [Multi-domain] Cd Length: 251 Bit Score: 47.45 E-value: 6.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 23 SRTPLWRQLAEALRLLILDGRLTLQTRLPGERELAAALNVSRTTIASALGQLREEGFLYSRQGSGSRIVLPERPADL-PL 101
Cdd:PRK09990 4 ERRPIADVVAERIERLIVDGVLKVGQALPSERRLCEKLGFSRSALREGLTVLRGRGIIETAQGRGSFVARLNRVQDAsPL 83
|
|
| PRK07908 |
PRK07908 |
threonine-phosphate decarboxylase; |
151-439 |
7.97e-06 |
|
threonine-phosphate decarboxylase;
Pssm-ID: 236128 Cd Length: 349 Bit Score: 47.69 E-value: 7.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 151 REAIARRYserGLPtrPDEVMVVNGALSAFALILRLftgPGDRVVIDAPTYPMAISAIQGASCRPVGVALPQQgWDCDgl 230
Cdd:PRK07908 64 RAAVAARH---GRT--PDEVLLLAGAAEGFALLARL---RPRRAAVVHPSFTEPEAALRAAGIPVHRVVLDPP-FRLD-- 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 231 AATIAQTAPRLAWLMPDfhNPTGRCmdaptrQRVADIAARTRT--TLVIDETMADlwynAPPPPPLASFNPDAA-VLTIG 307
Cdd:PRK07908 133 PAAVPDDADLVVIGNPT--NPTSVL------HPAEQLLALRRPgrILVVDEAFAD----AVPGEPESLAGDDLPgVLVLR 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 308 SAGKSfWG--GLRIGWIRASARTIASLIQARDSLDLGTPLLEQLACSWLLENAATLLPPRRDMLKARRDMCETLMAEyfp 385
Cdd:PRK07908 201 SLTKT-WSlaGLRVGYALGAPDVLARLTRGRAHWPVGTLQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGLRAV--- 276
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 490244489 386 RWRFSPPEGGLSFWVELPDmlATLFSARAESQGIHIGTGTRF-GLEGafdRYLRL 439
Cdd:PRK07908 277 GARVVDPAAAPFVLVRVPD--AELLRKRLRERGIAVRRGDTFpGLDP---DYLRL 326
|
|
| PRK07682 |
PRK07682 |
aminotransferase; |
146-287 |
1.23e-05 |
|
aminotransferase;
Pssm-ID: 181082 [Multi-domain] Cd Length: 378 Bit Score: 47.42 E-value: 1.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 146 GLPVLREAIARRYSER-GLPTRPD-EVMVVNGALSAFALILRLFTGPGDRVVIDAPTYPMAISAIQGASCRPVGVALPQQ 223
Cdd:PRK07682 58 GLLELRQEIAKYLKKRfAVSYDPNdEIIVTVGASQALDVAMRAIINPGDEVLIVEPSFVSYAPLVTLAGGVPVPVATTLE 137
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 490244489 224 gwdcDGLAATIAQ-----TAPRLAWLMPDFHNPTGRCMDAPTRQRVADIAARTRTTLVIDETMADLWYN 287
Cdd:PRK07682 138 ----NEFKVQPAQieaaiTAKTKAILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYD 202
|
|
| PRK12414 |
PRK12414 |
putative aminotransferase; Provisional |
109-407 |
1.65e-05 |
|
putative aminotransferase; Provisional
Pssm-ID: 183514 Cd Length: 384 Bit Score: 47.09 E-value: 1.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 109 LNLSTAA--LSAGPEVHQAFQHAMTllppylaqTGYDQ----QGLPVLREAIARRySERGLPTRPD---EVMVVNGALSA 179
Cdd:PRK12414 32 LNLSQGApnFAPDPALVEGVARAMR--------DGHNQyapmAGIAALREALAEK-TERLYGARYDpasEVTVIASASEG 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 180 FALILRLFTGPGDRVVIDAPTYP--MAISAIQGAScrPVGVALPQQGW--DCDGLAATIAqtaPRLAWLMPDF-HNPTGR 254
Cdd:PRK12414 103 LYAAISALVHPGDEVIYFEPSFDsyAPIVRLQGAT--PVAIKLSPEDFrvNWDEVAAAIT---PRTRMIIVNTpHNPSAT 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 255 CMDAPTRQRVADIAARTRTTLVIDETMADLWYNAPPPPPLASFNPDAA-VLTIGSAGKSFW-GGLRIGWIRASARTIASL 332
Cdd:PRK12414 178 VFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAErSVIVSSFGKSYHvTGWRVGYCLAPAELMDEI 257
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 490244489 333 IQARDSLDLG--TPLleQLACSWLLENAATLLpPRRDMLKARRDMCETLMAEyfPRWRFSPPEGglSFWvelpdMLA 407
Cdd:PRK12414 258 RKVHQFMVFSadTPM--QHAFAEALAEPASYL-GLGAFYQRKRDLLARELAG--SRFELLPSEG--SFF-----MLA 322
|
|
| avtA |
PRK09440 |
valine--pyruvate transaminase; Provisional |
116-404 |
3.24e-05 |
|
valine--pyruvate transaminase; Provisional
Pssm-ID: 236517 Cd Length: 416 Bit Score: 46.00 E-value: 3.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 116 LSAG-----PEVHQAFQHAMTLL--PPYLAQT--GYDQ-QGLPVLREAIARRYSER-GLPTRPDEVMVVNGALSAFALIL 184
Cdd:PRK09440 35 LGGGnpahiPEMEDYFRDLLADLlaSGKLTEAlgNYDGpQGKDELIEALAALLNERyGWNISPQNIALTNGSQSAFFYLF 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 185 RLFTGPGD-----RVVID-APTYP-MAISAIQG---ASCRPVGVALPQQGW----DCDGLAatIAQTAPRLAWLMPDfhN 250
Cdd:PRK09440 115 NLFAGRRAdgslkKILFPlAPEYIgYADAGLEEdlfVSYRPNIELLPEGQFkyhvDFEHLH--IDEDTGAICVSRPT--N 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 251 PTGRCMDAPTRQRVADIAARTRTTLVIDetmadlwyNA--PPPPPLasfnpdaavltIGSAGKSFWG------------- 315
Cdd:PRK09440 191 PTGNVLTDEELEKLDALARQHNIPLLID--------NAygPPFPGI-----------IFSEATPLWNpniilcmslsklg 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 316 --GLRIG-------WIRA--SARTIASLIQARDSLDLGTPLLEQLAcswLLENAATLLPPRrdmLKARRDMCETLMAEYF 384
Cdd:PRK09440 252 lpGVRCGiviadeeIIEAlsNMNGIISLAPGRLGPAIAAEMIESGD---LLRLSETVIRPF---YRQKVQLAIALLRRYL 325
|
330 340
....*....|....*....|..
gi 490244489 385 P--RWRFSPPEGGLSFWVELPD 404
Cdd:PRK09440 326 PdePCLIHKPEGAIFLWLWFKD 347
|
|
| PTZ00433 |
PTZ00433 |
tyrosine aminotransferase; Provisional |
141-321 |
4.18e-05 |
|
tyrosine aminotransferase; Provisional
Pssm-ID: 185613 Cd Length: 412 Bit Score: 45.93 E-value: 4.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 141 GYDQQ-GLPVLREAIARrYSERGLPTRP--------DEVMVVNGALSAFALILRLFTGPGDRVVIDAPTYPMAISAiqga 211
Cdd:PTZ00433 70 GYPPTvGSPEAREAVAT-YWRNSFVHKEslkstikkDNVVLCSGVSHAILMALTALCDEGDNILVPAPGFPHYETV---- 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 212 sCRPVGVAL------PQQGWDCDGLAATIAQTAPRLAWLMpdfHNPTGRCMDAPTRQRVADI---AARTRTTLVIDETMA 282
Cdd:PTZ00433 145 -CKAYGIEMrfyncrPEKDWEADLDEIRRLVDDRTKALIM---TNPSNPCGSNFSRKHVEDIirlCEELRLPLISDEIYA 220
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 490244489 283 DLWYNAPPPPPLASFNPDAAVLTIGSAGKSFW-GGLRIGW 321
Cdd:PTZ00433 221 GMVFNGATFTSVADFDTTVPRVILGGTAKNLVvPGWRLGW 260
|
|
| BirA |
COG1654 |
Biotin operon repressor [Transcription]; |
52-110 |
6.32e-05 |
|
Biotin operon repressor [Transcription];
Pssm-ID: 441260 [Multi-domain] Cd Length: 324 Bit Score: 44.98 E-value: 6.32e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 52 GErELAAALNVSRTTIASALGQLREEGF-LYSRQGSGSRIVlpeRPADLPLPAGISSTLN 110
Cdd:COG1654 21 GE-ELAEELGVSRAAVWKHIKALRELGYeIESVPGKGYRLA---EPPDLLDPEEIRAGLS 76
|
|
| PRK14999 |
PRK14999 |
histidine utilization repressor; Provisional |
19-94 |
1.52e-04 |
|
histidine utilization repressor; Provisional
Pssm-ID: 184961 [Multi-domain] Cd Length: 241 Bit Score: 43.38 E-value: 1.52e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 490244489 19 QETSSRTPLWRQLAEALRLLILDGRLTLQTRLPGERELAAALNVSRTTIASALGQLREEGFLYSRQGSGSRIVLPE 94
Cdd:PRK14999 5 RSRSAPAPFYETVKQDICKKIAGGVWQPHDRIPSEAELVAQYGFSRMTINRALRELTDEGWLVRLQGVGTFVAEPK 80
|
|
| PRK06290 |
PRK06290 |
LL-diaminopimelate aminotransferase; |
141-357 |
2.48e-04 |
|
LL-diaminopimelate aminotransferase;
Pssm-ID: 235772 Cd Length: 410 Bit Score: 43.49 E-value: 2.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 141 GYDQQGLPVLREAIA----RRYSERGLptrpDEVMVVN---GALSAFALILRLFTGPGDRVVIDAPTYPMAISAIQ--GA 211
Cdd:PRK06290 77 GYADNGIQEFKEAAArymeKVFGVKDI----DPVTEVIhsiGSKPALAMLPSCFINPGDVTLMTVPGYPVTGTHTKyyGG 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 212 SCRPVGVA-----LPqqgwDCDGLAATIAQTAPRLAWLMPDfhNPTGRCMDAPTRQRVADIAARTRTTLVIDETMADLWY 286
Cdd:PRK06290 153 EVYNLPLLeennfLP----DLDSIPKDIKEKAKLLYLNYPN--NPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTF 226
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 490244489 287 NAPPPpplaSF--NPDA--AVLTIGSAGKSF-WGGLRIGWIRASARTIASLIQARDSLDLGTPLLEQLACSWLLEN 357
Cdd:PRK06290 227 DGKPL----SFlsVPGAkeVGVEIHSLSKAYnMTGWRLAFVVGNELIVKAFATVKDNNDSGQFIAIQKAGIYALDH 298
|
|
| PLN03026 |
PLN03026 |
histidinol-phosphate aminotransferase; Provisional |
150-253 |
2.52e-04 |
|
histidinol-phosphate aminotransferase; Provisional
Pssm-ID: 178597 Cd Length: 380 Bit Score: 43.15 E-value: 2.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 150 LREAIArrySERGLPtrPDEVMVVNGALSAFALILRLFTGPGDRVVIDAPTYPMAI--SAIQGAS----CRPVGVALpqq 223
Cdd:PLN03026 91 LRAALA---EDSGLE--SENILVGCGADELIDLLMRCVLDPGDKIIDCPPTFGMYVfdAAVNGAEvikvPRTPDFSL--- 162
|
90 100 110
....*....|....*....|....*....|.
gi 490244489 224 gwDCDGLAATIAQTAPRLAWLM-PDfhNPTG 253
Cdd:PLN03026 163 --DVPRIVEAVETHKPKLLFLTsPN--NPDG 189
|
|
| PRK10079 |
PRK10079 |
phosphonate metabolism transcriptional regulator PhnF; Provisional |
50-111 |
6.16e-04 |
|
phosphonate metabolism transcriptional regulator PhnF; Provisional
Pssm-ID: 182227 [Multi-domain] Cd Length: 241 Bit Score: 41.30 E-value: 6.16e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490244489 50 LPGERELAAALNVSRTTIASALGQLREEGFLYSRQGSGsrIVLPERPADLPLPAGISSTLNL 111
Cdd:PRK10079 35 LPAEQQLAARYEVNRHTLRRAIDQLVEKGWVQRRQGVG--VLVLMRPYDYPLNAQARFSQNL 94
|
|
| HTH_24 |
pfam13412 |
Winged helix-turn-helix DNA-binding; |
35-80 |
1.55e-03 |
|
Winged helix-turn-helix DNA-binding;
Pssm-ID: 404317 [Multi-domain] Cd Length: 45 Bit Score: 36.26 E-value: 1.55e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 490244489 35 LRLLILDGRLTLqtrlpgeRELAAALNVSRTTIASALGQLREEGFL 80
Cdd:pfam13412 7 LNLLQENPRISQ-------RELAERLGLSPSTVNRRLKRLEEEGVI 45
|
|
| HTH_CRP |
cd00092 |
helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic ... |
31-93 |
1.61e-03 |
|
helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Pssm-ID: 238044 [Multi-domain] Cd Length: 67 Bit Score: 36.87 E-value: 1.61e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 490244489 31 LAEALRLLILDGRLTLQTRLP-GERELAAALNVSRTTIASALGQLREEGFLySRQGSGSRIVLP 93
Cdd:cd00092 5 LASFLLNLSLRYGAGDLVQLPlTRQEIADYLGLTRETVSRTLKELEEEGLI-SRRGRGKYRVNP 67
|
|
| FAAL |
cd05931 |
Fatty acyl-AMP ligase (FAAL); FAAL belongs to the class I adenylate forming enzyme family and ... |
184-310 |
3.12e-03 |
|
Fatty acyl-AMP ligase (FAAL); FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin.
Pssm-ID: 341254 [Multi-domain] Cd Length: 547 Bit Score: 39.91 E-value: 3.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 184 LRLFTGPGDRVVIDAPTYPMAISAIQG---ASCRPVGVALPQQGWDCDGLAATIAQTAPRLAWLMPDFHnptgrcmDAPT 260
Cdd:cd05931 41 LQAVGKPGDRVLLLAPPGLDFVAAFLGclyAGAIAVPLPPPTPGRHAERLAAILADAGPRVVLTTAAAL-------AAVR 113
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 490244489 261 RQRVADIAARTRTTLVIDETM---ADLWYNAPPPPplasfnPDAAVL--TIGSAG 310
Cdd:cd05931 114 AFAASRPAAGTPRLLVVDLLPdtsAADWPPPSPDP------DDIAYLqyTSGSTG 162
|
|
| HTH_ARSR |
cd00090 |
Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric ... |
31-91 |
3.15e-03 |
|
Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.
Pssm-ID: 238042 [Multi-domain] Cd Length: 78 Bit Score: 36.51 E-value: 3.15e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 490244489 31 LAEALRLLIL----DGRLTLqtrlpgeRELAAALNVSRTTIASALGQLREEGFLYSRQGSGSRIV 91
Cdd:cd00090 4 LSDPTRLRILrlllEGPLTV-------SELAERLGLSQSTVSRHLKKLEEAGLVESRREGRRVYY 61
|
|
| PRK05839 |
PRK05839 |
succinyldiaminopimelate transaminase; |
250-439 |
3.60e-03 |
|
succinyldiaminopimelate transaminase;
Pssm-ID: 180281 Cd Length: 374 Bit Score: 39.67 E-value: 3.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 250 NPTGRCMDAPTRQRVADIAARTRTTLVIDETMADLWYNAPPPPPL-ASF---NPD-AAVLTIGSAGK-SFWGGLRIGWIR 323
Cdd:PRK05839 166 NPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYENTPPPSLLeASIlvgNESfKNVLVINSISKrSSAPGLRSGFIA 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490244489 324 ASARTIASLIQARDSLDLGTPLLEQLACS--WLLENAATLLpprRDMLKARRDMCETLMAEYFPRWRFsppegglSFWVE 401
Cdd:PRK05839 246 GDASILKKYKAYRTYLGCASPLPLQKAAAvaWLDDEHAEFF---RNIYAKNLKLAREILGITIPPATF-------YVWLP 315
|
170 180 190
....*....|....*....|....*....|....*....
gi 490244489 402 LPDMLAtlFSARA-ESQGIHIGTGTRFGLEGAFDRYLRL 439
Cdd:PRK05839 316 VDNDEE--FTKKLyQNEGIKVLPGSFLGRNGIGKGYVRI 352
|
|
| Lrp |
COG1522 |
DNA-binding transcriptional regulator, Lrp family [Transcription]; |
35-80 |
4.28e-03 |
|
DNA-binding transcriptional regulator, Lrp family [Transcription];
Pssm-ID: 441131 [Multi-domain] Cd Length: 138 Bit Score: 37.45 E-value: 4.28e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 490244489 35 LRLLILDGRLTLqtrlpgeRELAAALNVSRTTIASALGQLREEGFL 80
Cdd:COG1522 11 LRLLQEDGRLSF-------AELAERVGLSESTVLRRVRRLEEAGVI 49
|
|
| HTH_11 |
pfam08279 |
HTH domain; This family includes helix-turn-helix domains in a wide variety of proteins. |
36-87 |
4.41e-03 |
|
HTH domain; This family includes helix-turn-helix domains in a wide variety of proteins.
Pssm-ID: 429896 [Multi-domain] Cd Length: 52 Bit Score: 35.10 E-value: 4.41e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 490244489 36 RLLILDGRLTLQtrlpgerELAAALNVSRTTIASALGQLREEGF-LYSRQGSG 87
Cdd:pfam08279 6 LLLEARGPISGQ-------ELAEKLGVSRRTIRRDIKILEELGVpIEAEPGRG 51
|
|
| IscR |
COG1959 |
DNA-binding transcriptional regulator, IscR family [Transcription]; |
34-101 |
8.20e-03 |
|
DNA-binding transcriptional regulator, IscR family [Transcription];
Pssm-ID: 441562 Cd Length: 141 Bit Score: 36.74 E-value: 8.20e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 490244489 34 ALRLLIL------DGRLTLqtrlpgeRELAAALNVSRTTIASALGQLREEGFLYSRQGSGSRIVLPERPADLPL 101
Cdd:COG1959 9 ALRALLYlalhpgGEPVTS-------KEIAERQGISPSYLEKILQKLRKAGLVESVRGPGGGYRLARPPEEITL 75
|
|
| PRK11886 |
PRK11886 |
bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA; |
52-111 |
8.94e-03 |
|
bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA;
Pssm-ID: 237010 [Multi-domain] Cd Length: 319 Bit Score: 38.23 E-value: 8.94e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490244489 52 GErELAAALNVSRTTIASALGQLREEGF-LYSRQGSGSRIVlpeRPADLPLPAGISSTLNL 111
Cdd:PRK11886 21 GE-QLGEELGISRAAIWKHIQTLEEWGLdIFSVKGKGYRLA---EPLDLLDPERISSQLPP 77
|
|
| |
