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Conserved domains on  [gi|490246225|ref|WP_004144400|]
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MULTISPECIES: type-F conjugative transfer system pilin chaperone TraQ [Bacteria]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TraQ super family cl11516
Type-F conjugative transfer system pilin chaperone (TraQ); This entry represents TraQ, a ...
 1-61 6.10e-32

Type-F conjugative transfer system pilin chaperone (TraQ); This entry represents TraQ, a protein that makes a specific interaction with pilin (TraA) to aid its transfer through the inner membrane during the process of F-type conjugative pilus assembly.


The actual alignment was detected with superfamily member pfam09679:

Pssm-ID: 386150  Cd Length: 85  Bit Score: 106.13  E-value: 6.10e-32
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490246225   1 MRNIRFPDLDITGMWVLAVGVFFHLIARLVRKQPELAVQAGEIFGLGMVVFGGYRILNALI 61
Cdd:pfam09679  1 MRKFRFPALDVTGMWVLSLGVWFHIVARLVYRLPEMAVGLAEIIAVGLVLIGGYRILDAWI 61
 
Name Accession Description Interval E-value
TraQ pfam09679
Type-F conjugative transfer system pilin chaperone (TraQ); This entry represents TraQ, a ...
 1-61 6.10e-32

Type-F conjugative transfer system pilin chaperone (TraQ); This entry represents TraQ, a protein that makes a specific interaction with pilin (TraA) to aid its transfer through the inner membrane during the process of F-type conjugative pilus assembly.


Pssm-ID: 370613  Cd Length: 85  Bit Score: 106.13  E-value: 6.10e-32
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490246225   1 MRNIRFPDLDITGMWVLAVGVFFHLIARLVRKQPELAVQAGEIFGLGMVVFGGYRILNALI 61
Cdd:pfam09679  1 MRKFRFPALDVTGMWVLSLGVWFHIVARLVYRLPEMAVGLAEIIAVGLVLIGGYRILDAWI 61
PRK13727 PRK13727
conjugal transfer pilin chaperone TraQ; Provisional
 1-78 3.26e-31

conjugal transfer pilin chaperone TraQ; Provisional


Pssm-ID: 237483  Cd Length: 80  Bit Score: 104.13  E-value: 3.26e-31
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 490246225  1 MRNIRFPDLDITGMWVLAVGVFFHLIARLVRKQPELAVQAGEIFGLGMVVFGGYRILNALIAEAEKEEKACEKQPDEP 78
Cdd:PRK13727  3 KRRFSLPRLDITGMWVFSLGVWFHIVARLVYSKPWMAFFLAELIAAILVLFGAYRVLDAWIARVSREEREALEARQQA 80
 
Name Accession Description Interval E-value
TraQ pfam09679
Type-F conjugative transfer system pilin chaperone (TraQ); This entry represents TraQ, a ...
 1-61 6.10e-32

Type-F conjugative transfer system pilin chaperone (TraQ); This entry represents TraQ, a protein that makes a specific interaction with pilin (TraA) to aid its transfer through the inner membrane during the process of F-type conjugative pilus assembly.


Pssm-ID: 370613  Cd Length: 85  Bit Score: 106.13  E-value: 6.10e-32
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490246225   1 MRNIRFPDLDITGMWVLAVGVFFHLIARLVRKQPELAVQAGEIFGLGMVVFGGYRILNALI 61
Cdd:pfam09679  1 MRKFRFPALDVTGMWVLSLGVWFHIVARLVYRLPEMAVGLAEIIAVGLVLIGGYRILDAWI 61
PRK13727 PRK13727
conjugal transfer pilin chaperone TraQ; Provisional
 1-78 3.26e-31

conjugal transfer pilin chaperone TraQ; Provisional


Pssm-ID: 237483  Cd Length: 80  Bit Score: 104.13  E-value: 3.26e-31
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 490246225  1 MRNIRFPDLDITGMWVLAVGVFFHLIARLVRKQPELAVQAGEIFGLGMVVFGGYRILNALIAEAEKEEKACEKQPDEP 78
Cdd:PRK13727  3 KRRFSLPRLDITGMWVFSLGVWFHIVARLVYSKPWMAFFLAELIAAILVLFGAYRVLDAWIARVSREEREALEARQQA 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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