|
Name |
Accession |
Description |
Interval |
E-value |
| mglC |
PRK09478 |
galactose/methyl galactoside ABC transporter permease MglC; |
1-336 |
0e+00 |
|
galactose/methyl galactoside ABC transporter permease MglC;
Pssm-ID: 181892 [Multi-domain] Cd Length: 336 Bit Score: 537.73 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 1 MKAVNKKNALTWLKEGGIYVVLLVLLAIIIIQDPTFLSLMNLSNVLTQSSVRVIIALGVAGLIVTQGTDLSAGRQVGLAA 80
Cdd:PRK09478 1 MSALNKKSFLTYLKEGGIYVVLLVLLAIIIIQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 81 VVAATLLQSMDNANKVFPQLETLPIALVVVIVCAIGALIGLLNGVIIAYLKVTPFITTLGTMIIVYGVNSLYYDHVGASP 160
Cdd:PRK09478 81 VVAATLLQSMDNANKVFPELATMPIALVILIVCAIGAVIGLINGLIIAYLNVTPFIATLGTMIIVYGINSLYYDFVGASP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 161 VAGFDEKFSTFAQGFLRIGDFKLSYITFYALIAVFLVWVLWTKTRFGKNIFAIGGNPEAARVSGVNVPFNLILVYALSGV 240
Cdd:PRK09478 161 ISGFDSGFSTFAQGFVALGSFRLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVPLNLLMIYALSGV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 241 FYAFGGMLEAGRIGSATNNLGFMYELDAIAACVVGGVSFAGGVGTVAGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGSI 320
Cdd:PRK09478 241 FYAFGGMLEAGRIGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAI 320
|
330
....*....|....*.
gi 490261184 321 IIFAVALDSLKYARKK 336
Cdd:PRK09478 321 IIFAVALDSLKYARKK 336
|
|
| MglC |
COG4211 |
ABC-type glucose/galactose transport system, permease component [Carbohydrate transport and ... |
1-336 |
2.41e-161 |
|
ABC-type glucose/galactose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443358 Cd Length: 336 Bit Score: 453.97 E-value: 2.41e-161
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 1 MKAVNKKNALTWLKEGGIYVVLLVLLAIIIIQDPTFLSLMNLSNVLTQSSVRVIIALGVAGLIVTQGTDLSAGRQVGLAA 80
Cdd:COG4211 1 EKKIKKKKIKNFLLNNAIYIVLLLLIIAIIIINPNFLSLRNIRNILTQSSTRMIIALGVAGLIVTQGTDLSAGRMVGLAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 81 VVAATLLQSMDNANKVFPQLETLPIALVVVIVCAIGALIGLLNGVIIAYLKVTPFITTLGTMIIVYGVNSLYYDHVGASP 160
Cdd:COG4211 81 VISASLLQSGDYAGKFFPNLPELPIIVPILIAIAIGALFGLINGFFVAKLKVPPFIATLGTMLIVYGINSIYTDRPGAQP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 161 VAGFDEKFSTFAQGFLRIGDFKLSYITFYALIAVFLVWVLWTKTRFGKNIFAIGGNPEAARVSGVNVPFNLILVYALSGV 240
Cdd:COG4211 161 IGGLDESFTNFAQGSINIGGFGIPYLIIYAIIVIVIMWFIWNKTKFGKNMYAVGGNPEAAEVSGVNVFKTLIIVYALAGA 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 241 FYAFGGMLEAGRIGSATNNLGFMYELDAIAACVVGGVSFAGGVGTVAGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGSI 320
Cdd:COG4211 241 LYGFAGFLEAARTGSATNNYGNGYELDAIAACVVGGVSFSGGIGKISGVVIGVLIFTVINYGLTFIGVNPYWQYIIKGLI 320
|
330
....*....|....*.
gi 490261184 321 IIFAVALDSLKYARKK 336
Cdd:COG4211 321 IIAAVALDIRKYLKKK 336
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
49-328 |
1.48e-69 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 217.66 E-value: 1.48e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 49 SSVRVIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQSMdnankvfpqleTLPIALVVVIVCAIGALIGLLNGVIIA 128
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNA-----------GLPIPLAILAALAVGALIGLLNGLLVA 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 129 YLKVTPFITTLGTMIIVYGVNSLYydhVGASPVAGFDEKFSTFaqgFLRIGDFKLSYITFYALIAVFLVWVLWTKTRFGK 208
Cdd:cd06579 70 YLRIPPFIVTLGTMFILRGLALLI---TGGRPISGLPPLFSFF---LGGGLILGIPVPVLIALAVALVAWFLLRRTRFGR 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 209 NIFAIGGNPEAARVSGVNVPFNLILVYALSGVFYAFGGMLEAGRIGSATNNLGFMYELDAIAACVVGGVSFAGGVGTVAG 288
Cdd:cd06579 144 YLYAVGGNPEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLG 223
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 490261184 289 VVTGVIIFTVINYGLTYIGVNPYWQYIIKGSIIIFAVALD 328
Cdd:cd06579 224 TLLGALLLGVLNNGLNLLGVSSFWQQIVKGAILLLAVALD 263
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
33-328 |
1.42e-33 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 127.19 E-value: 1.42e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 33 DPTFLSLMNLSNVLTQSSVRVIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQSMDnankvfpqletLPIALVVVIV 112
Cdd:NF040906 23 GGILLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNWG-----------MPWWLAVLLC 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 113 CAIGALIGLLNGVIIAYLKVTPFITTLGTMIIVYGvnsLYYDHVGASPVAGFDEKFSTFAQGFL--RIGDFKLSYITFY- 189
Cdd:NF040906 92 LLVGALIGAWQGFWVAYVGIPAFIVTLAGMLVFRG---LTLVVLGGQSIGPFPDGFQKISSGFLpdLFGGTGLHLLTLLl 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 190 -ALIAVFLVWVLW-------------------------------------------------------------TKTRFG 207
Cdd:NF040906 169 gVLAAAALVWSQLrgrrrrikyglevepmalfiaklvliaaailfftyllasyrglpnvliilgvlilvysfvtNRTVIG 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 208 KNIFAIGGNPEAARVSGVNVPFNLILVYALSGVFYAFGGMLEAGRIGSATNNLGFMYELDAIAACVVGGVSFAGGVGTVA 287
Cdd:NF040906 249 RHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASASGGVGTVV 328
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 490261184 288 GVVTGVIIFTVINYGLTYIGVNPYWQYIIKGSIIIFAVALD 328
Cdd:NF040906 329 GAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAVAFD 369
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
41-325 |
5.40e-30 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 115.05 E-value: 5.40e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 41 NLSNVLTQSSVRVIIALGVAGLI-VTQGTDLSAGRQVGLAAVVAATLLQSMDNAnkvfpqletlpIALVVVIVCAIGALI 119
Cdd:pfam02653 1 NILNILTLASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAYVAAMLLNLLGPG-----------LWLALPVGILVGAAV 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 120 GLLNGVIIAYLKVTPFITTLGTMIIVYGVNSLYYDHVGASPVAGFDEKFSTFAQGFLRIGDFKLSYItfYALIAVFLVWV 199
Cdd:pfam02653 70 GLLIGILTLRLKINEVIITLLLNLAALGLALFLVTGILGGEGGTSGITGPSGFPGAFLSFAFAFIFL--LALLLVLALWL 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 200 LWTKTRFGKNIFAIGGNPEAARVSGVNVPFNLILVYALSGVFYAFGGMLEAGRIGSAT-NNLGFMYELDAIAACVVGGVS 278
Cdd:pfam02653 148 LLYRTKFGRALRAVGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPpSNFGVGLGLDAIAAVVLGGAG 227
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 490261184 279 faggvGTVAGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGSIIIFAV 325
Cdd:pfam02653 228 -----SPIGVVIGSLIIGLVQSLGLGALGSPPELSLLVLGALLILVL 269
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| mglC |
PRK09478 |
galactose/methyl galactoside ABC transporter permease MglC; |
1-336 |
0e+00 |
|
galactose/methyl galactoside ABC transporter permease MglC;
Pssm-ID: 181892 [Multi-domain] Cd Length: 336 Bit Score: 537.73 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 1 MKAVNKKNALTWLKEGGIYVVLLVLLAIIIIQDPTFLSLMNLSNVLTQSSVRVIIALGVAGLIVTQGTDLSAGRQVGLAA 80
Cdd:PRK09478 1 MSALNKKSFLTYLKEGGIYVVLLVLLAIIIIQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 81 VVAATLLQSMDNANKVFPQLETLPIALVVVIVCAIGALIGLLNGVIIAYLKVTPFITTLGTMIIVYGVNSLYYDHVGASP 160
Cdd:PRK09478 81 VVAATLLQSMDNANKVFPELATMPIALVILIVCAIGAVIGLINGLIIAYLNVTPFIATLGTMIIVYGINSLYYDFVGASP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 161 VAGFDEKFSTFAQGFLRIGDFKLSYITFYALIAVFLVWVLWTKTRFGKNIFAIGGNPEAARVSGVNVPFNLILVYALSGV 240
Cdd:PRK09478 161 ISGFDSGFSTFAQGFVALGSFRLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVPLNLLMIYALSGV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 241 FYAFGGMLEAGRIGSATNNLGFMYELDAIAACVVGGVSFAGGVGTVAGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGSI 320
Cdd:PRK09478 241 FYAFGGMLEAGRIGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAI 320
|
330
....*....|....*.
gi 490261184 321 IIFAVALDSLKYARKK 336
Cdd:PRK09478 321 IIFAVALDSLKYARKK 336
|
|
| MglC |
COG4211 |
ABC-type glucose/galactose transport system, permease component [Carbohydrate transport and ... |
1-336 |
2.41e-161 |
|
ABC-type glucose/galactose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443358 Cd Length: 336 Bit Score: 453.97 E-value: 2.41e-161
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 1 MKAVNKKNALTWLKEGGIYVVLLVLLAIIIIQDPTFLSLMNLSNVLTQSSVRVIIALGVAGLIVTQGTDLSAGRQVGLAA 80
Cdd:COG4211 1 EKKIKKKKIKNFLLNNAIYIVLLLLIIAIIIINPNFLSLRNIRNILTQSSTRMIIALGVAGLIVTQGTDLSAGRMVGLAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 81 VVAATLLQSMDNANKVFPQLETLPIALVVVIVCAIGALIGLLNGVIIAYLKVTPFITTLGTMIIVYGVNSLYYDHVGASP 160
Cdd:COG4211 81 VISASLLQSGDYAGKFFPNLPELPIIVPILIAIAIGALFGLINGFFVAKLKVPPFIATLGTMLIVYGINSIYTDRPGAQP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 161 VAGFDEKFSTFAQGFLRIGDFKLSYITFYALIAVFLVWVLWTKTRFGKNIFAIGGNPEAARVSGVNVPFNLILVYALSGV 240
Cdd:COG4211 161 IGGLDESFTNFAQGSINIGGFGIPYLIIYAIIVIVIMWFIWNKTKFGKNMYAVGGNPEAAEVSGVNVFKTLIIVYALAGA 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 241 FYAFGGMLEAGRIGSATNNLGFMYELDAIAACVVGGVSFAGGVGTVAGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGSI 320
Cdd:COG4211 241 LYGFAGFLEAARTGSATNNYGNGYELDAIAACVVGGVSFSGGIGKISGVVIGVLIFTVINYGLTFIGVNPYWQYIIKGLI 320
|
330
....*....|....*.
gi 490261184 321 IIFAVALDSLKYARKK 336
Cdd:COG4211 321 IIAAVALDIRKYLKKK 336
|
|
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
12-336 |
1.01e-78 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 243.09 E-value: 1.01e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 12 WLKEGGIYVVLLVLLAIIIIQDPTFLSLMNLSNVLTQSSVRVIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQSMD 91
Cdd:COG1172 15 LLPELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVVAALLLVALG 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 92 nankvfpqletLPIALVVVIVCAIGALIGLLNGVIIAYLKVTPFITTLGTMIIVYGVNSLYydhVGASPVAGFDEKFSTF 171
Cdd:COG1172 95 -----------LPILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLL---TGGRPISGLPDAFRAL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 172 AQGFLrigdFKLSYITFYALIAVFLVWVLWTKTRFGKNIFAIGGNPEAARVSGVNVPFNLILVYALSGVFYAFGGMLEAG 251
Cdd:COG1172 161 GQGSL----LGIPVPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAA 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 252 RIGSATNNLGFMYELDAIAACVVGGVSFAGGVGTVAGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGSIIIFAVALDSLK 331
Cdd:COG1172 237 RLGSAQPNAGSGYELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDRLR 316
|
....*
gi 490261184 332 YARKK 336
Cdd:COG1172 317 RRRRA 321
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
49-328 |
1.48e-69 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 217.66 E-value: 1.48e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 49 SSVRVIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQSMdnankvfpqleTLPIALVVVIVCAIGALIGLLNGVIIA 128
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNA-----------GLPIPLAILAALAVGALIGLLNGLLVA 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 129 YLKVTPFITTLGTMIIVYGVNSLYydhVGASPVAGFDEKFSTFaqgFLRIGDFKLSYITFYALIAVFLVWVLWTKTRFGK 208
Cdd:cd06579 70 YLRIPPFIVTLGTMFILRGLALLI---TGGRPISGLPPLFSFF---LGGGLILGIPVPVLIALAVALVAWFLLRRTRFGR 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 209 NIFAIGGNPEAARVSGVNVPFNLILVYALSGVFYAFGGMLEAGRIGSATNNLGFMYELDAIAACVVGGVSFAGGVGTVAG 288
Cdd:cd06579 144 YLYAVGGNPEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLG 223
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 490261184 289 VVTGVIIFTVINYGLTYIGVNPYWQYIIKGSIIIFAVALD 328
Cdd:cd06579 224 TLLGALLLGVLNNGLNLLGVSSFWQQIVKGAILLLAVALD 263
|
|
| COG4158 |
COG4158 |
Predicted ABC-type sugar transport system, permease component [General function prediction ... |
34-331 |
4.32e-55 |
|
Predicted ABC-type sugar transport system, permease component [General function prediction only];
Pssm-ID: 443324 Cd Length: 334 Bit Score: 182.82 E-value: 4.32e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 34 PTFLSLMNLSNVLTQSSVRVIIALGVAGLIVTQGTDLSAGRQVGLAAVVA--ATLLQSmdnankvfPQLETLPIALVVvi 111
Cdd:COG4158 48 PNFLTVQNLSNIARQASINIVLAAGMTFVILTGGIDLSVGSILAASAVVAvlVSLLPG--------LGLLGIPAALLV-- 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 112 vcaiGALIGLLNGVIIAYLKVTPFITTLGTMIIVYGVNSLYydhVGASPVAGFDEKFSTFAQGFLrigdFKLSYITFYAL 191
Cdd:COG4158 118 ----GLLFGLINGLLIAFLKLPPFIVTLGSLTALRGAARLL---ANGTTVFNPDLPFAWIGNGYL----LGIPWLVVIAL 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 192 IAVFLVWVLWTKTRFGKNIFAIGGNPEAARVSGVNVPFNLILVYALSGVFYAFGGMLEAGRIGSAT-NNLGFMYELDAIA 270
Cdd:COG4158 187 AVVLASWFILRRTVLGVHIYAVGGNAQAARLTGIKVWRVLLFVYAVSGLLAGLGGVMSAARLYAANgLQLGQGYELDAIA 266
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490261184 271 ACVVGGVSFAGGVGTVAGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGSIIIFAVALDSLK 331
Cdd:COG4158 267 AVILGGTSFVGGIGSIWGTLIGALIIAVLNNGLILLGVSDFWQFIIKGLVIIIAVALDRYR 327
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
34-328 |
5.01e-50 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 169.13 E-value: 5.01e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 34 PTFLSLMNLSNVLTQSSVRVIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLqSMDnankvfpqletLPIALVVVIVC 113
Cdd:PRK09512 37 PNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIV-GIE-----------VNALVAVPAAL 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 114 AIGALIGLLNGVIIAYLKVTPFITTLGTMIIVYGVNSLYYDhvgASPV-AGFDEKFSTFAqgFLRIGDFKLSYITFYALI 192
Cdd:PRK09512 105 ALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTD---GSPInTGFTDNADLFG--WFGIGRPLGIPTPVWIMA 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 193 AVFLV-WVLWTKTRFGKNIFAIGGNPEAARVSGVNVPFNLILVYALSGVFYAFGGMLEAGRIGSATNNLGFMYELDAIAA 271
Cdd:PRK09512 180 IVFLAaWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAALAGIIEVARLSSAQPTAGTGYELDAIAA 259
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 490261184 272 CVVGGVSFAGGVGTVAGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGSIIIFAVALD 328
Cdd:PRK09512 260 VVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVD 316
|
|
| PRK09699 |
PRK09699 |
D-allose ABC transporter permease; |
9-330 |
1.15e-42 |
|
D-allose ABC transporter permease;
Pssm-ID: 182035 [Multi-domain] Cd Length: 312 Bit Score: 149.92 E-value: 1.15e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 9 ALTWLKEGGIYVVLLVLLAIIIIQDPTFLSLMNLSNVLTQSSVRVIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQ 88
Cdd:PRK09699 6 ALFWDKYGTFFILAIIVAIFGSLSPEYFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKLML 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 89 SMDNankvfpqletlPIALVVVIVCAIGALIGLLNGVIIAYLKVTPFITTLGTMIIVYGVNSLYYDhvgASPVAGFDEKF 168
Cdd:PRK09699 86 AGVD-----------PFLAALIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISD---ANSVYGFSFDF 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 169 STFAQGFLrigdFKLSYITFYALIAVFLVWVLWTKTRFGKNIFAIGGNPEAARVSGVNVPFNLILVYALSGVFYAFGGML 248
Cdd:PRK09699 152 VNFFAASV----IGIPVPVIFSLIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVV 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 249 EAGRIGSATNNLGFMYELDAIAACVVGGVSFAGGVGTVAGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGSIIIFAVALD 328
Cdd:PRK09699 228 STARLGAAEPLAGMGFETYAIASAIIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALD 307
|
..
gi 490261184 329 SL 330
Cdd:PRK09699 308 RL 309
|
|
| araH |
PRK11285 |
L-arabinose transporter permease protein; Provisional |
34-336 |
3.04e-37 |
|
L-arabinose transporter permease protein; Provisional
Pssm-ID: 183076 [Multi-domain] Cd Length: 333 Bit Score: 135.96 E-value: 3.04e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 34 PTFLSLMNLSNVLTQSSVRVIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQSMDNankvfpqletlpIALVVVIVC 113
Cdd:PRK11285 48 PNFASFINMKGLGLAISMIGMVACTMLFCLASGDFDLSVASVVAFAGVVTAVVINATES------------LWLGVAAGL 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 114 AIGALIGLLNGVIIAYLKVTPFITTLGTMIIVYGVNSLYYD--HVGASpvagfDEKFstFAQGFLRIgdFKLSYITFYAL 191
Cdd:PRK11285 116 LLGAAVGLVNGFVIARLKINALITTLATMQIVRGLAYIISDgkAVGIS-----DERF--FALGYANF--FGVPAPIWLTV 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 192 IAVFLVWVLWTKTRFGKNIFAIGGNPEAARVSGVNVPFNLILVYALSGVFYAFGGMLEAGRIGSATNNLGFMYELDAIAA 271
Cdd:PRK11285 187 ACFVVFGFLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLQGLVSALAGVILASRMTSGQPMTSIGFELIVISA 266
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 490261184 272 CVVGGVSFAGGVGTVAGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGSIIIFAVALDSLKYARKK 336
Cdd:PRK11285 267 CVLGGVSLKGGIAKISGVVAGVLILGTVENAMNLLNISPFYQYVVRGLILLAAVLFDRYKQRAKR 331
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
33-328 |
1.42e-33 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 127.19 E-value: 1.42e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 33 DPTFLSLMNLSNVLTQSSVRVIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQSMDnankvfpqletLPIALVVVIV 112
Cdd:NF040906 23 GGILLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNWG-----------MPWWLAVLLC 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 113 CAIGALIGLLNGVIIAYLKVTPFITTLGTMIIVYGvnsLYYDHVGASPVAGFDEKFSTFAQGFL--RIGDFKLSYITFY- 189
Cdd:NF040906 92 LLVGALIGAWQGFWVAYVGIPAFIVTLAGMLVFRG---LTLVVLGGQSIGPFPDGFQKISSGFLpdLFGGTGLHLLTLLl 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 190 -ALIAVFLVWVLW-------------------------------------------------------------TKTRFG 207
Cdd:NF040906 169 gVLAAAALVWSQLrgrrrrikyglevepmalfiaklvliaaailfftyllasyrglpnvliilgvlilvysfvtNRTVIG 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 208 KNIFAIGGNPEAARVSGVNVPFNLILVYALSGVFYAFGGMLEAGRIGSATNNLGFMYELDAIAACVVGGVSFAGGVGTVA 287
Cdd:NF040906 249 RHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASASGGVGTVV 328
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 490261184 288 GVVTGVIIFTVINYGLTYIGVNPYWQYIIKGSIIIFAVALD 328
Cdd:NF040906 329 GAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAVAFD 369
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
41-325 |
5.40e-30 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 115.05 E-value: 5.40e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 41 NLSNVLTQSSVRVIIALGVAGLI-VTQGTDLSAGRQVGLAAVVAATLLQSMDNAnkvfpqletlpIALVVVIVCAIGALI 119
Cdd:pfam02653 1 NILNILTLASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAYVAAMLLNLLGPG-----------LWLALPVGILVGAAV 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 120 GLLNGVIIAYLKVTPFITTLGTMIIVYGVNSLYYDHVGASPVAGFDEKFSTFAQGFLRIGDFKLSYItfYALIAVFLVWV 199
Cdd:pfam02653 70 GLLIGILTLRLKINEVIITLLLNLAALGLALFLVTGILGGEGGTSGITGPSGFPGAFLSFAFAFIFL--LALLLVLALWL 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 200 LWTKTRFGKNIFAIGGNPEAARVSGVNVPFNLILVYALSGVFYAFGGMLEAGRIGSAT-NNLGFMYELDAIAACVVGGVS 278
Cdd:pfam02653 148 LLYRTKFGRALRAVGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPpSNFGVGLGLDAIAAVVLGGAG 227
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 490261184 279 faggvGTVAGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGSIIIFAV 325
Cdd:pfam02653 228 -----SPIGVVIGSLIIGLVQSLGLGALGSPPELSLLVLGALLILVL 269
|
|
| PRK15432 |
PRK15432 |
autoinducer 2 ABC transporter permease LsrC; Provisional |
33-328 |
1.33e-25 |
|
autoinducer 2 ABC transporter permease LsrC; Provisional
Pssm-ID: 185330 [Multi-domain] Cd Length: 344 Bit Score: 104.81 E-value: 1.33e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 33 DPTFLSLMNLSNVLTQSSVRVIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLqsmdNANKvfpqleTLPIALVVVIV 112
Cdd:PRK15432 28 DRQYLSLQTLTMVFSSAQILILLAIGATLVMLTRNIDVSVGSITGLCAVLVGMLL----NAGY------SLPVACLATLL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 113 CaiGALIGLLNGVIIAYLKVTPFITTLGTMIIVYGVNSLYydhVGASPVAGFDEKFSTFAQGFLrigdFKLSYITFYALI 192
Cdd:PRK15432 98 L--GLLAGFFNGVLVAWLRIPAIVATLGTLGLYRGIMLLW---TGGKWIEGLPAELKQLSAPIL----LGISPIGWLTLI 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 193 AVFLVWVLWTKTRFGKNIFAIGGNPEAARVSGVNVPFNLILVYALSGVFYAFGGMLEAGRIGSATNNLGFMYELDAIAAC 272
Cdd:PRK15432 169 LILAMAWLLAKTAFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQIGFIPNQTGTGLEMKAIAAC 248
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 490261184 273 VVGGVSFAGGVGTVAGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGSIIIFAVALD 328
Cdd:PRK15432 249 VLGGISLLGGSGTIIGAVLGAYFLTQIDSVLVLLRIPAWWNDFIAGLVLLGVLVFD 304
|
|
| PRK11618 |
PRK11618 |
inner membrane ABC transporter permease protein YjfF; Provisional |
32-276 |
1.98e-25 |
|
inner membrane ABC transporter permease protein YjfF; Provisional
Pssm-ID: 183235 [Multi-domain] Cd Length: 317 Bit Score: 103.88 E-value: 1.98e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 32 QDPTFLSLMNLSNVLTQSSVRVIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQSMDnankvfpqletLPIALVVVI 111
Cdd:PRK11618 25 QFPGFASTRVICNLLTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKLIGDYG-----------WSPLLAFPL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 112 VCAIGALIGLLNGVIIAYLKVTPFITTLGTMIIVYGVNSLyydhVGASPVAGFDEKFSTFAQGFLRI-GDFKLSYITFYA 190
Cdd:PRK11618 94 VLVMGAAFGAFMGALIHYLKLPAFIVTLAGMFLARGVSFL----VSEESIPINHPFYDTLSSLAWKLpGGGRLSAMALIM 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 191 LIAVFLVWVLWTKTRFGKNIFAIGGNPEAARVSGVNVPFNLILVYALSGVFYAFGGMLEAGRIGSATNNLGFMYELDAIA 270
Cdd:PRK11618 170 LAVVAIGIFLAHRTRFGNNVYAIGGNATSANLMGIPVRRTTIRIYMLSGFLATLAGIVFSLYTSAGYALAAVGVELDAIA 249
|
....*.
gi 490261184 271 ACVVGG 276
Cdd:PRK11618 250 AVVIGG 255
|
|
| PRK15038 |
PRK15038 |
autoinducer 2 ABC transporter permease LsrD; |
54-334 |
4.48e-24 |
|
autoinducer 2 ABC transporter permease LsrD;
Pssm-ID: 184998 Cd Length: 330 Bit Score: 100.29 E-value: 4.48e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 54 IIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQSmdnankvfpqleTLPIALVVVIVCAIGALIGLLNGVIIAYLKVT 133
Cdd:PRK15038 47 IVALPLTMVIVSGGIDISFGSTIGLCAIALGVLFQS------------GVPMPLAILLTLLLGALCGLINAGLIIYTGVN 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 134 PFITTLGTMIIVYGVNSLYYDHVGASP---VAGFDEKFSTFAQGFLrigdFKLSYITFYALIAVFLVWVLWTKTRFGKNI 210
Cdd:PRK15038 115 PLVITLGTLYLFGGSALLLSGMAGATGyegIGGFPMAFTDFANLDV----LGLPVPLIIFLICLLVFWLLMHRTHAGRNV 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 211 FAIGGNPEAARVSGVNVPFNLILVYALSGVFYAFGGMLEAGRIGSATNNLGFMYELDAIAACVVGGVSFAGGVGTVAGVV 290
Cdd:PRK15038 191 FLIGQSPRVALYSAIPVNRTLCALYAMTGLASAIAAVLLVSYFGSARSDLGASFLMPAITAVVLGGANIYGGSGSIIGTA 270
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 490261184 291 TGVIIFTVINYGLTYIGVNPYWQYIIKGSIIIFAVALDSLKYAR 334
Cdd:PRK15038 271 LAVLLVGYLQQGLQMAGVPNQISSALSGALLIVVVVGRSVSLHR 314
|
|
| TM_PBP1_branched-chain-AA_like |
cd06574 |
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette ... |
49-325 |
1.11e-19 |
|
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.
Pssm-ID: 119320 [Multi-domain] Cd Length: 266 Bit Score: 86.95 E-value: 1.11e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 49 SSVRVIIALGVAGLIVTQG-TDLSAGRQVGLAAVVAATLLQSMDNankvfpqletlpIALVVVIVCAIGALIGLLNGVII 127
Cdd:cd06574 1 GLIYAILALGVYIVFRILGfPDLTVDGSFPLGAAVAAILIVAGYN------------PWLALIAAILAGAAAGLVTGFLH 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 128 AYLKVTPFITTLGTMIIVYGVNSLYYdhvGASPVAGFDEKFSTFAQGFLRIGDFKLSYITFYALIAVFLVWVLW-TKTRF 206
Cdd:cd06574 69 TRLKINGLLAGILIMIGLYSINLRIM---GGPNIPLGTRDTLLGLLLLFGISGTLSIPVVLLLIVLLVLFLVIWfLRTKL 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 207 GKNIFAIGGNPEAARVSGVNVPFNLILVYALSGVFYAFGGMLEAGRIGSATNNLGFMYELDAIAACVVGGVSFAGGVGTV 286
Cdd:cd06574 146 GLAMRATGDNPDMARSLGINVDRTRILGLVISNALAALGGALYAQYQGFADVNMGIGTGVIGLAAVIIGGAIVGRRTIKA 225
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 490261184 287 AGVVTGV--IIFTVINYGLTYIGVNPYWQYIIKGSIIIFAV 325
Cdd:cd06574 226 SILGVIIgaILYRIALALALGSGLIPSDLKLITAGVIVLVL 266
|
|
| NupP |
COG4603 |
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and ... |
35-330 |
8.97e-16 |
|
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and metabolism];
Pssm-ID: 443653 [Multi-domain] Cd Length: 356 Bit Score: 77.08 E-value: 8.97e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 35 TFLSLMNLSNVLTQSSVRVIIALGVA-----GL--IVTQGtdlsagrQVGLAAVVAATLLQSMDNANKvfpqletlPIAL 107
Cdd:COG4603 52 AFGSPYGLGETLVKATPLILTGLAVAvafraGLfnIGAEG-------QLYLGALAAAAVGLALPGLPG--------PLHL 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 108 VVVIVCAI--GALIGLLNGVIIAYLKVTPFITTLgtM---IIVYGVNSLYYDHVGAsPVAGFDE--KFSTFAQGFLRIGD 180
Cdd:COG4603 117 PLALLAGAlaGALWAAIPGLLKARFGVNEVITTL--MlnyIALYLVNYLVRGPLRD-PGSGFPQtpPIPESARLPRLLPG 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 181 FKLSYITFYALIAVFLVWVLWTKTRFGKNIFAIGGNPEAARVSGVNVPFNLILVYALSGVFYAFGGMLE-AGRIGSATNN 259
Cdd:COG4603 194 TRLHLGLLIALLAAVLVWVLLNRTTLGYELRAVGLNPRAARYAGINVKRLIVLAMLISGALAGLAGAVEvLGVQGRLTPG 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 260 LGFMYELDAIAACVVGGVSfaggvgtvagvvTGVIIFTVINYGLTYIG---------VNPYWQYIIKGSIIIFAVALDSL 330
Cdd:COG4603 274 FSPGYGFTGIAVALLGRNN------------PLGIILAALLFGALYVGgdamqralgVPSEIVDVIQGLIILFVLAADFL 341
|
|
| LivH |
COG0559 |
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport ... |
78-277 |
3.15e-14 |
|
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440325 [Multi-domain] Cd Length: 290 Bit Score: 72.02 E-value: 3.15e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 78 LAAVVAATLLQSMDnankvfpqletLPIALVVVIVCAIGALIG-LLNGVIIAYLK----VTPFITTLGTMIIVYGVNSLY 152
Cdd:COG0559 45 LGAYVAYTLATLLG-----------LPLWLALLLAVLVAALLGvLLERLVIRPLRgappLALLLATIGLSLVLQGLVLLI 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 153 YdhvGASPVAgfdekFSTFAQGFLRIGDFKLSYITFY----ALIAVFLVWVLWTKTRFGKNIFAIGGNPEAARVSGVNVP 228
Cdd:COG0559 114 F---GADPRS-----FPALLSGSVELGGVSIPAYRLFiivvALVLLAALWLFLRRTRLGLAMRAVAQNREAARLMGINVD 185
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 490261184 229 FNLILVYALSGVFYAFGGMLeAGRIGSATNNLGFMYELDAIAACVVGGV 277
Cdd:COG0559 186 RVIALTFALGAALAGLAGVL-LAPIYSVSPTMGFLLGLKAFAAVVLGGL 233
|
|
| TM_PBP1_transp_TpRbsC_like |
cd06580 |
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. ... |
104-276 |
4.55e-13 |
|
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Pssm-ID: 119322 [Multi-domain] Cd Length: 234 Bit Score: 67.85 E-value: 4.55e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 104 PIALVVVIVCAI--GALIGLLNGVIIAYLKVTPFITTLGTMIIVYGVnslyydhvgaspvagfdekfstfaqgflrigdf 181
Cdd:cd06580 47 TGSLPLGLLAAAlaGALWALLPALLKAKLGVNEVISGLMLNYIALGL--------------------------------- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 182 kLSYITFYALIAVFLVWVLWTKTRFGKNIFAIGGNPEAARVSGVNVPFNLILVYALSGVFYAFGGMLE-AGRIGSATNNL 260
Cdd:cd06580 94 -TSYLLLLALLLVILVWLLLYRTRFGLRLRAVGENPRAARYAGINVKRVRLLAMLISGALAGLAGAYLvLGVQGRFTEGM 172
|
170
....*....|....*.
gi 490261184 261 GFMYELDAIAACVVGG 276
Cdd:cd06580 173 SAGYGFIAIAVALLGR 188
|
|
| TM_PBP1_LivH_like |
cd06582 |
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two ... |
103-277 |
9.04e-13 |
|
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119324 [Multi-domain] Cd Length: 272 Bit Score: 67.46 E-value: 9.04e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 103 LPIALVVVIVCAIGALIG-LLNGVIIAYLK----VTPFITTLGTMIIVYGVNSLYYDHVGASPvagfdekfSTFAQGFLR 177
Cdd:cd06582 49 LPFWLALLLALLVAALLGvLLERLVLRPLRgaplLTLLITFGGLLILLQGLLLIFGGDPRVPP--------PPLLSGSVE 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 178 IGDFKLSYITFY----ALIAVFLVWVLWTKTRFGKNIFAIGGNPEAARVSGVNVPFNLILVYALSGVFYAFGGMLeAGRI 253
Cdd:cd06582 121 LGGVTIPPYRLFiiavALVLLAALYLFLRRTRLGRAIRAVAQNPEAARLLGINVRRVFALTFALGAALAGLAGVL-LAPI 199
|
170 180
....*....|....*....|....
gi 490261184 254 GSATNNLGFMYELDAIAACVVGGV 277
Cdd:cd06582 200 TGVSPTMGLLLLLKAFAAVVLGGL 223
|
|
| TM_PBP1_LivM_like |
cd06581 |
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two ... |
103-277 |
2.51e-12 |
|
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119323 [Multi-domain] Cd Length: 268 Bit Score: 65.93 E-value: 2.51e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 103 LPIALVVVIVCAIGALIGLLNGVIIAYLKVTPF-ITTLGTMIIVYGVNSLYYDHVGASpvAGFDEKFSTFAQGFLRIGDF 181
Cdd:cd06581 45 LPFWLALLAAGLVAALVGLLLGLPALRLRGVYFaIATLAFAEIVRLLALNWSSLTGGS--NGLSGIPPPLLGGLLLSSPL 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 182 KLSYITFYALIAVFLVWVLWTKTRFGKNIFAIGGNPEAARVSGVNVPFNLILVYALSGVFYAFGGMLEAGRIGSAT-NNL 260
Cdd:cd06581 123 AFYYLVLAVLLLVLLLLRRLVRSPFGRALRAIRENEVAAEALGINVTRYKLLAFALSAALAGLAGALYAHYLGFVSpESF 202
|
170
....*....|....*..
gi 490261184 261 GFMYELDAIAACVVGGV 277
Cdd:cd06581 203 GFALSIELLLMVVLGGL 219
|
|
| LivM |
COG4177 |
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport ... |
103-277 |
1.13e-10 |
|
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443336 [Multi-domain] Cd Length: 285 Bit Score: 61.25 E-value: 1.13e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 103 LPIALVVVIVCAIGALIGLLNGVIIAYLKVTPF-ITTLGTMIIVYGVnSLYYDHV--GASPVAGFDeKFSTFaqGFLRIG 179
Cdd:COG4177 55 LPFWLALLLAGLVAALLGLLIGLPALRLRGDYLaIATLAFAEIVRLL-ALNLESLtgGADGLSGIP-RPTLF--GLDLGS 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 180 DFKLSYITFYALIAVFLVWVLWTKTRFGKNIFAIGGNPEAARVSGVNVPFNLILVYALSGVFYAFGGMLEAGRIGSAT-N 258
Cdd:COG4177 131 PLAFYYLVLALLVLVLLLLRRLVRSRFGRALRAIRENEIAAEALGINVTRYKLLAFVLSAALAGLAGALYAHYVGFVSpE 210
|
170
....*....|....*....
gi 490261184 259 NLGFMYELDAIAACVVGGV 277
Cdd:COG4177 211 SFSFLLSIEILLMVVLGGL 229
|
|
| NupQ |
COG1079 |
ABC-type guanosine uptake system NupNOPQ, permease subunit NupQ [Nucleotide transport and ... |
114-276 |
4.96e-09 |
|
ABC-type guanosine uptake system NupNOPQ, permease subunit NupQ [Nucleotide transport and metabolism];
Pssm-ID: 440697 [Multi-domain] Cd Length: 309 Bit Score: 56.62 E-value: 4.96e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 114 AIGALIGLLNGVIIAYLKVTPFITTLGTMIIVYGVNSL----YYDHVGASPVAGfdeKFSTFAQGFLR----IGD--FKL 183
Cdd:COG1079 71 LAGALLALLHAFLTITLRANQIVSGLALNLLALGLTAFlgrlLFGQGGQTPSIP---GLPPIPIPGLSdipvLGPllFGQ 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490261184 184 SYITFYALIAVFLVWVLWTKTRFGKNIFAIGGNPEAARVSGVNVPFNLILVYALSGVFYAFGGM-LEAGRIGSATNNL-- 260
Cdd:COG1079 148 SPLVYLALLLVPLVWWVLYRTRFGLRLRAVGENPAAADALGINVYRIRYLAVLIGGALAGLGGAyLSLGYVGSFTEGMta 227
|
170
....*....|....*...
gi 490261184 261 --GFMyeldAIAACVVGG 276
Cdd:COG1079 228 grGFI----ALAAVIFGR 241
|
|
| |
