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Conserved domains on  [gi|490288719|ref|WP_004184337|]
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MULTISPECIES: cytochrome c [Klebsiella]

Protein Classification

c-type cytochrome( domain architecture ID 11449528)

c-type cytochrome is an electron carrier protein that contains one or more heme groups; similar to Thermus thermophilus cytochrome c-552, which is a monoheme basic protein that appears to function as an electron donor to cytochrome oxidase

CATH:  1.10.760.10
Gene Ontology:  GO:0020037|GO:0009055|GO:0046872
PubMed:  31252007|22723177|18568041|12594933|10647174|10395550
SCOP:  3000815

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
217-408 7.42e-23

Cytochrome c, mono- and diheme variants [Energy production and conversion];


:

Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 95.02  E-value: 7.42e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490288719 217 LAGSNAPIDGWVASSLRGENRDGLGTWSEAELAEFLKTGRNDKSVVFGGMSDVVEHSLQYLsddditAIARYLKSLPPRG 296
Cdd:COG2010    4 LGGALGALLGGGGLSDEGAGAAGAGGVAAAGAGLAGALVDGAAAAAALGAAAAAAAAAAAL------ALALLLALLLAAA 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490288719 297 GKQTPAPVEDSVAKdlwkgndsktGAALYVDNCAACHRTDGVGYKRAFPSLKGNPvVQTEDATSLIHIVLTGSTTPAvkd 376
Cdd:COG2010   78 AADAPAADAEALAR----------GKALYEQNCAACHGADGKGGLGAAPNLTDDA-LYGGDPEALVETILNGRPGGA--- 143

                        170       180       190
                 ....*....|....*....|....*....|..
gi 490288719 377 avsnltMPSFGWRLDDQQVADVVNFIRTSWGN 408
Cdd:COG2010  144 ------MPAFGGQLSDEEIAALAAYLRSLSGN 169
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
1-131 5.24e-05

Cytochrome c, mono- and diheme variants [Energy production and conversion];


:

Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 43.78  E-value: 5.24e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490288719   1 MMKMQWLSALVLGALSCAAFAEEAPADSNLIKQGEYLARAgDCVACHTNGKAGKPfaGGLPmetpigtiystNITPDKEH 80
Cdd:COG2010   59 AAAAALALALLLALLLAAAAADAPAADAEALARGKALYEQ-NCAACHGADGKGGL--GAAP-----------NLTDDALY 124

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 490288719  81 GIGGytfEEFDDAVRKGVRKdgstlyPAMpyPSFA-RISEADMRAMYAYFMH 131
Cdd:COG2010  125 GGDP---EALVETILNGRPG------GAM--PAFGgQLSDEEIAALAAYLRS 165
 
Name Accession Description Interval E-value
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
217-408 7.42e-23

Cytochrome c, mono- and diheme variants [Energy production and conversion];


Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 95.02  E-value: 7.42e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490288719 217 LAGSNAPIDGWVASSLRGENRDGLGTWSEAELAEFLKTGRNDKSVVFGGMSDVVEHSLQYLsddditAIARYLKSLPPRG 296
Cdd:COG2010    4 LGGALGALLGGGGLSDEGAGAAGAGGVAAAGAGLAGALVDGAAAAAALGAAAAAAAAAAAL------ALALLLALLLAAA 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490288719 297 GKQTPAPVEDSVAKdlwkgndsktGAALYVDNCAACHRTDGVGYKRAFPSLKGNPvVQTEDATSLIHIVLTGSTTPAvkd 376
Cdd:COG2010   78 AADAPAADAEALAR----------GKALYEQNCAACHGADGKGGLGAAPNLTDDA-LYGGDPEALVETILNGRPGGA--- 143

                        170       180       190
                 ....*....|....*....|....*....|..
gi 490288719 377 avsnltMPSFGWRLDDQQVADVVNFIRTSWGN 408
Cdd:COG2010  144 ------MPAFGGQLSDEEIAALAAYLRSLSGN 169
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
 321-406 3.09e-14

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 67.95  E-value: 3.09e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490288719  321 GAALYVDNCAACHRTDGVGYKRAFPSLKGNPVVQTEDATSLIHIVLTGSTTPAV--KDAVSNLTMPSFgWRLDDQQVADV 398
Cdd:pfam00034   3 GKKLFAANCAACHGVNGEGAGAGGPDLAGLAARYPGDALGAIRENKHAIGGGGVdrAGGPPGTGMPAF-DGLTDEEIADL 81


                  ....*...
gi 490288719  399 VNFIRTSW 406
Cdd:pfam00034  82 VAYLLSLS 89
ccoP TIGR00782
cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of ...
 303-403 5.62e-06

cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase. [Energy metabolism, Electron transport]


Pssm-ID: 129864 [Multi-domain]  Cd Length: 285  Bit Score: 47.97  E-value: 5.62e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490288719  303 PVEDSVAKDLWKGNDSKTGAALYVDNCAACHRTDGVGYKrAFPSLKGNPVVQTEDATSLIHIVLTGSTTPAVKDAVSNlT 382
Cdd:TIGR00782  92 PLEDIAKDPELKQYARNAGAAIFRTWCAQCHGSGAGGAK-GFPNLLDNDWLWGGTLEGIHTTIKHGIRDPDDGDTYVG-E 169

                          90       100
                  ....*....|....*....|.
gi 490288719  383 MPSFGWRLDDQQVADVVNFIR 403
Cdd:TIGR00782 170 MPAFGPLLEEADIKDVASYVM 190
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
1-131 5.24e-05

Cytochrome c, mono- and diheme variants [Energy production and conversion];


Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 43.78  E-value: 5.24e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490288719   1 MMKMQWLSALVLGALSCAAFAEEAPADSNLIKQGEYLARAgDCVACHTNGKAGKPfaGGLPmetpigtiystNITPDKEH 80
Cdd:COG2010   59 AAAAALALALLLALLLAAAAADAPAADAEALARGKALYEQ-NCAACHGADGKGGL--GAAP-----------NLTDDALY 124

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 490288719  81 GIGGytfEEFDDAVRKGVRKdgstlyPAMpyPSFA-RISEADMRAMYAYFMH 131
Cdd:COG2010  125 GGDP---EALVETILNGRPG------GAM--PAFGgQLSDEEIAALAAYLRS 165
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
 40-131 2.04e-03

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 37.13  E-value: 2.04e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490288719   40 AGDCVACHT-NGKAGKPFAGGLpmeTPIGTIYSTNITPDKEHGIGGYtfeefddavrKGVRKDGSTLYPAMPYPSFARIS 118
Cdd:pfam00034   8 AANCAACHGvNGEGAGAGGPDL---AGLAARYPGDALGAIRENKHAI----------GGGGVDRAGGPPGTGMPAFDGLT 74

                          90
                  ....*....|...
gi 490288719  119 EADMRAMYAYFMH 131
Cdd:pfam00034  75 DEEIADLVAYLLS 87
 
Name Accession Description Interval E-value
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
217-408 7.42e-23

Cytochrome c, mono- and diheme variants [Energy production and conversion];


Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 95.02  E-value: 7.42e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490288719 217 LAGSNAPIDGWVASSLRGENRDGLGTWSEAELAEFLKTGRNDKSVVFGGMSDVVEHSLQYLsddditAIARYLKSLPPRG 296
Cdd:COG2010    4 LGGALGALLGGGGLSDEGAGAAGAGGVAAAGAGLAGALVDGAAAAAALGAAAAAAAAAAAL------ALALLLALLLAAA 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490288719 297 GKQTPAPVEDSVAKdlwkgndsktGAALYVDNCAACHRTDGVGYKRAFPSLKGNPvVQTEDATSLIHIVLTGSTTPAvkd 376
Cdd:COG2010   78 AADAPAADAEALAR----------GKALYEQNCAACHGADGKGGLGAAPNLTDDA-LYGGDPEALVETILNGRPGGA--- 143

                        170       180       190
                 ....*....|....*....|....*....|..
gi 490288719 377 avsnltMPSFGWRLDDQQVADVVNFIRTSWGN 408
Cdd:COG2010  144 ------MPAFGGQLSDEEIAALAAYLRSLSGN 169
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
 321-406 3.09e-14

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 67.95  E-value: 3.09e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490288719  321 GAALYVDNCAACHRTDGVGYKRAFPSLKGNPVVQTEDATSLIHIVLTGSTTPAV--KDAVSNLTMPSFgWRLDDQQVADV 398
Cdd:pfam00034   3 GKKLFAANCAACHGVNGEGAGAGGPDLAGLAARYPGDALGAIRENKHAIGGGGVdrAGGPPGTGMPAF-DGLTDEEIADL 81


                  ....*...
gi 490288719  399 VNFIRTSW 406
Cdd:pfam00034  82 VAYLLSLS 89
TsdA COG3258
Thiosulfate dehydrogenase TsdA, contains C-terminal cytochrome c domain [Inorganic ion ...
 178-423 3.39e-14

Thiosulfate dehydrogenase TsdA, contains C-terminal cytochrome c domain [Inorganic ion transport and metabolism];


Pssm-ID: 442489 [Multi-domain]  Cd Length: 216  Bit Score: 71.42  E-value: 3.39e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490288719 178 VLERGRYLVEGLGHCGACHTPRSLTMqekalsesegddylAGSNAPIDGWVASSlrgenrDGLGTWSEAELAEFLKTGRN 257
Cdd:COG3258   11 AARRGEELFTNGLSCASCHLDAGTKP--------------WGVAAAYPAYRARN------GKVVTLEDRINGCFTRSMNG 70

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490288719 258 DKsvvfggmsdvvehslQYLSDDDITAIARYLKSL---PPRGGKQTPAPVEDSVAKDLWKgnDSKTGAALYVDNCAACHR 334
Cdd:COG3258   71 KP---------------LPLDSAEMKALVAYLRWLsrgLPVGVKLDGRGLPKLPKPAASA--DVERGKALYAERCASCHG 133

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490288719 335 TDGVGYKRA-----FPSLKGNPVvqtedatslihiVLTGSTTPAVK---DAVSNLTMPSF-GWRLDDQQVADVVNFIRTs 405
Cdd:COG3258  134 ADGEGQGRAdgqygFPPLWGGDS------------YNDGAGMARLGtlaDFIKGRNMPLGkPGSLSDDEAWDVAAYVRS- 200

                        250
                 ....*....|....*...
gi 490288719 406 wgNNAPAVSASDVAKVRK 423
Cdd:COG3258  201 --LPRPVPRKTDVPAVRK 216
Cytochrome_CBB3 pfam13442
Cytochrome C oxidase, cbb3-type, subunit III;
319-402 2.07e-10

Cytochrome C oxidase, cbb3-type, subunit III;


Pssm-ID: 463879 [Multi-domain]  Cd Length: 67  Bit Score: 56.26  E-value: 2.07e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490288719  319 KTGAALYVDNCAACHRTDGVGykrafPSLKGNPVvqteDATSLIHIVLTGSTtpavkdavsnlTMPSFGWRLDDQQVADV 398
Cdd:pfam13442   4 AAGEALYAANCASCHGTGGAG-----PSLAGRAL----PPEALVDIIRNGKG-----------AMPAFGGDLSDEELEAL 63


                  ....
gi 490288719  399 VNFI 402
Cdd:pfam13442  64 AAYL 67
CytC553 COG2863
Cytochrome c553 [Energy production and conversion];
317-404 1.03e-06

Cytochrome c553 [Energy production and conversion];


Pssm-ID: 442110 [Multi-domain]  Cd Length: 98  Bit Score: 47.03  E-value: 1.03e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490288719 317 DSKTGAAlYVDNCAACHRTDGVG-YKRAFPSLKGnpvvQTEDAtslIHIVLTGSTTPAVKDAVsnltMPSFGWRLDDQQV 395
Cdd:COG2863   14 DAARGKA-YAAACAACHGADGEGnPGGGAPRLAG----QHAEY---LVAQLKAFRSGARKNGV----MPAIAKGLSDEDI 81


                 ....*....
gi 490288719 396 ADVVNFIRT 404
Cdd:COG2863   82 KALAAYIAS 90
ccoP TIGR00782
cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of ...
 303-403 5.62e-06

cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase. [Energy metabolism, Electron transport]


Pssm-ID: 129864 [Multi-domain]  Cd Length: 285  Bit Score: 47.97  E-value: 5.62e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490288719  303 PVEDSVAKDLWKGNDSKTGAALYVDNCAACHRTDGVGYKrAFPSLKGNPVVQTEDATSLIHIVLTGSTTPAVKDAVSNlT 382
Cdd:TIGR00782  92 PLEDIAKDPELKQYARNAGAAIFRTWCAQCHGSGAGGAK-GFPNLLDNDWLWGGTLEGIHTTIKHGIRDPDDGDTYVG-E 169

                          90       100
                  ....*....|....*....|.
gi 490288719  383 MPSFGWRLDDQQVADVVNFIR 403
Cdd:TIGR00782 170 MPAFGPLLEEADIKDVASYVM 190
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
1-131 5.24e-05

Cytochrome c, mono- and diheme variants [Energy production and conversion];


Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 43.78  E-value: 5.24e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490288719   1 MMKMQWLSALVLGALSCAAFAEEAPADSNLIKQGEYLARAgDCVACHTNGKAGKPfaGGLPmetpigtiystNITPDKEH 80
Cdd:COG2010   59 AAAAALALALLLALLLAAAAADAPAADAEALARGKALYEQ-NCAACHGADGKGGL--GAAP-----------NLTDDALY 124

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 490288719  81 GIGGytfEEFDDAVRKGVRKdgstlyPAMpyPSFA-RISEADMRAMYAYFMH 131
Cdd:COG2010  125 GGDP---EALVETILNGRPG------GAM--PAFGgQLSDEEIAALAAYLRS 165
ccoP TIGR00782
cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of ...
 238-404 6.19e-05

cytochrome c oxidase, cbb3-type, subunit III; This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase. [Energy metabolism, Electron transport]


Pssm-ID: 129864 [Multi-domain]  Cd Length: 285  Bit Score: 44.50  E-value: 6.19e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490288719  238 DGLGTW--SEAELAEFLKTGRNDKSVVFGGMSDVVEHsLQYLSDDDITAIARYLKSLPPRGGKQTPApvedsvakdlwkg 315
Cdd:TIGR00782 137 DNDWLWggTLEGIHTTIKHGIRDPDDGDTYVGEMPAF-GPLLEEADIKDVASYVMSLSSGKPKDEAL------------- 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490288719  316 ndSKTGAALYVDNCAACHRTDGvgykrafpslKGNPVVQTEDATSliHIVLTGSTTPAVKDAVSN---LTMPSFGWRLDD 392
Cdd:TIGR00782 203 --AAKGQELFADNCTTCHGEDG----------KGLQELGAPNLTD--DVWLYGGDLKTITTTITNgrgGVMPAWGPRLSE 268

                         170
                  ....*....|..
gi 490288719  393 QQVADVVNFIRT 404
Cdd:TIGR00782 269 AQIKALAAYVHS 280
CytM COG5676
Cytochrome cM [Energy production and conversion];
321-404 7.39e-05

Cytochrome cM [Energy production and conversion];


Pssm-ID: 444390 [Multi-domain]  Cd Length: 124  Bit Score: 42.24  E-value: 7.39e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490288719 321 GAALYVDNCAACH--RTDG-VGykrafPSLKGnpVVQTEDATSLIHIVLTGSTTPavkdavsnltMPSFgwRLDDQQVAD 397
Cdd:COG5676   56 GHAIFQINCAGCHglQADGnVG-----PSLQG--VSKRKSDVSLIEQVISGKTPP----------MPKF--QPSPQEMAD 116


                 ....*..
gi 490288719 398 VVNFIRT 404
Cdd:COG5676  117 LLSYLET 123
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
59-295 6.48e-04

Cytochrome c, mono- and diheme variants [Energy production and conversion];


Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 40.32  E-value: 6.48e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490288719  59 GLPMETPIGTIYSTNITPDKEHGIGGYTFEEFDDAVRKGVRKDGSTLYPAMPYPSFARISEADMRAMYAYFMhgvepvnv 138
Cdd:COG2010    1 GGLLGGALGALLGGGGLSDEGAGAAGAGGVAAAGAGLAGALVDGAAAAAALGAAAAAAAAAAALALALLLAL-------- 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490288719 139 ankdtdipwplsmrwplafwrgifAPTPSDFVANPQVDPVLERGRYLVEGlgHCGACHTPRsltmqekalsesegddyLA 218
Cdd:COG2010   73 ------------------------LLAAAAADAPAADAEALARGKALYEQ--NCAACHGAD-----------------GK 109

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 490288719 219 GSNAPidgwvASSLRGENRDGLgtwSEAELAEFLKTGRNDksvvfGGMSDVVEHslqyLSDDDITAIARYLKSLPPR 295
Cdd:COG2010  110 GGLGA-----APNLTDDALYGG---DPEALVETILNGRPG-----GAMPAFGGQ----LSDEEIAALAAYLRSLSGN 169
thiosulf_SoxX TIGR04485
sulfur oxidation c-type cytochrome SoxX; Members of this family are SoxX, a c-type cytochrome ...
 328-404 1.07e-03

sulfur oxidation c-type cytochrome SoxX; Members of this family are SoxX, a c-type cytochrome with a CxxCH motif, part of a heterodimer with SoxA. SoxXA, SoxYZ, and SoxB contribute to thiosulfate oxidation to sulfate.


Pssm-ID: 275278 [Multi-domain]  Cd Length: 78  Bit Score: 37.57  E-value: 1.07e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490288719  328 NCAACHRTDGVGykrafpSLKGN--PvvqtedatSLIHIVLTGSTTPAVKDAVSNLT-------MPSFGWR--LDDQQVA 396
Cdd:TIGR04485   4 NCLACHQIPGSE------VFPGNigP--------SLTGYGARYPDEAYLRAKIADAKavnpctvMPRFGKNgiLTEQEIE 69


                  ....*...
gi 490288719  397 DVVNFIRT 404
Cdd:TIGR04485  70 DVVAYLLT 77
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
 40-131 2.04e-03

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 37.13  E-value: 2.04e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490288719   40 AGDCVACHT-NGKAGKPFAGGLpmeTPIGTIYSTNITPDKEHGIGGYtfeefddavrKGVRKDGSTLYPAMPYPSFARIS 118
Cdd:pfam00034   8 AANCAACHGvNGEGAGAGGPDL---AGLAARYPGDALGAIRENKHAI----------GGGGVDRAGGPPGTGMPAFDGLT 74

                          90
                  ....*....|...
gi 490288719  119 EADMRAMYAYFMH 131
Cdd:pfam00034  75 DEEIADLVAYLLS 87
CytC553 COG2863
Cytochrome c553 [Energy production and conversion];
169-299 3.10e-03

Cytochrome c553 [Energy production and conversion];


Pssm-ID: 442110 [Multi-domain]  Cd Length: 98  Bit Score: 37.02  E-value: 3.10e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490288719 169 FVANPQVDPVLERGRYLVEglgHCGACHTPrsltmqekalsesEGDDYLAGSNAPIDGWVASSLrgenrdglgtwsEAEL 248
Cdd:COG2863    5 LLAAPAAAGDAARGKAYAA---ACAACHGA-------------DGEGNPGGGAPRLAGQHAEYL------------VAQL 56

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 490288719 249 AEFLKTGRNDksvvfGGMSDVVEHslqyLSDDDITAIARYLKSLPPRGGKQ 299
Cdd:COG2863   57 KAFRSGARKN-----GVMPAIAKG----LSDEDIKALAAYIASLKAPPGAA 98
CytC553 COG2863
Cytochrome c553 [Energy production and conversion];
24-129 4.85e-03

Cytochrome c553 [Energy production and conversion];


Pssm-ID: 442110 [Multi-domain]  Cd Length: 98  Bit Score: 36.25  E-value: 4.85e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490288719  24 APADSNLIKQGEYLARAgdCVACHtngkaGKPFAGGLPMETPIgtiystnitpdkehgIGGYTFEEFDDAV---RKGVRK 100
Cdd:COG2863    8 APAAAGDAARGKAYAAA--CAACH-----GADGEGNPGGGAPR---------------LAGQHAEYLVAQLkafRSGARK 65

                         90       100
                 ....*....|....*....|....*....
gi 490288719 101 DgstlyPAMPyPSFARISEADMRAMYAYF 129
Cdd:COG2863   66 N-----GVMP-AIAKGLSDEDIKALAAYI 88
Cyc7 COG3474
Cytochrome c2 [Energy production and conversion];
321-349 7.65e-03

Cytochrome c2 [Energy production and conversion];


Pssm-ID: 442697 [Multi-domain]  Cd Length: 101  Bit Score: 36.01  E-value: 7.65e-03
                         10        20
                 ....*....|....*....|....*....
gi 490288719 321 GAALYVDNCAACHRTDGVGYKRAFPSLKG 349
Cdd:COG3474    6 GEKLFNRKCAACHSVDGGAGNRVGPNLNG 34
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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