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Conserved domains on  [gi|490298994|ref|WP_004194426|]
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MULTISPECIES: type IV conjugative transfer system pilin TraA [Gammaproteobacteria]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
TraA super family cl11503
TraA; Conjugative transfer of a bacteriocin plasmid, pPD1, of Enterococcus faecalis is induced ...
1-120 7.69e-47

TraA; Conjugative transfer of a bacteriocin plasmid, pPD1, of Enterococcus faecalis is induced in response to a peptide sex pheromone, cPD1, secreted from plasmid-free recipient cells. cPD1 is taken up by a pPD1 donor cell and binds to an intracellular receptor, TraA. Once a recipient cell acquires pPD1, it starts to produce an inhibitor of cPD1, termed iPD1, which functions as a TraA antagonist and blocks self-induction in donor cells. TraA transduces the signal of cPD1 to the mating response.


The actual alignment was detected with superfamily member pfam05513:

Pssm-ID: 299752  Cd Length: 120  Bit Score: 146.74  E-value: 7.69e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490298994    1 MNAVLSVQGSAVSEKTKPSFMSRVFNKKKALKVAKVALPVAAVAAFFPDAAMATTTATDLMKSGDATVKGTFGKQSSVVK 80
Cdd:pfam05513   1 MNAILSVQGAAAPEKKKPSFLSRTFNKKKALKLAKAAIPAAALAAFFPDAAMAAGGAQDLMASGDATVKATFGKDSSAVK 80
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 490298994   81 WVVLAEVVAGGIMYMMTKNVKFLFGFAIISTFITIGMSVA 120
Cdd:pfam05513  81 WVILAEVLAGAIMYMMTKNVKFLAGFAIISTFIAIGMAVA 120
 
Name Accession Description Interval E-value
TraA pfam05513
TraA; Conjugative transfer of a bacteriocin plasmid, pPD1, of Enterococcus faecalis is induced ...
1-120 7.69e-47

TraA; Conjugative transfer of a bacteriocin plasmid, pPD1, of Enterococcus faecalis is induced in response to a peptide sex pheromone, cPD1, secreted from plasmid-free recipient cells. cPD1 is taken up by a pPD1 donor cell and binds to an intracellular receptor, TraA. Once a recipient cell acquires pPD1, it starts to produce an inhibitor of cPD1, termed iPD1, which functions as a TraA antagonist and blocks self-induction in donor cells. TraA transduces the signal of cPD1 to the mating response.


Pssm-ID: 283228  Cd Length: 120  Bit Score: 146.74  E-value: 7.69e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490298994    1 MNAVLSVQGSAVSEKTKPSFMSRVFNKKKALKVAKVALPVAAVAAFFPDAAMATTTATDLMKSGDATVKGTFGKQSSVVK 80
Cdd:pfam05513   1 MNAILSVQGAAAPEKKKPSFLSRTFNKKKALKLAKAAIPAAALAAFFPDAAMAAGGAQDLMASGDATVKATFGKDSSAVK 80
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 490298994   81 WVVLAEVVAGGIMYMMTKNVKFLFGFAIISTFITIGMSVA 120
Cdd:pfam05513  81 WVILAEVLAGAIMYMMTKNVKFLAGFAIISTFIAIGMAVA 120
PRK13734 PRK13734
conjugal transfer pilin subunit TraA; Provisional
1-122 2.29e-38

conjugal transfer pilin subunit TraA; Provisional


Pssm-ID: 237485  Cd Length: 120  Bit Score: 125.43  E-value: 2.29e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490298994   1 MNAVLSVQGSAVSEKTKPSFmsRVFNKKKALKVAKVALPVAAVAAFFPDAAMATTTATDLMKSGDATVKGTFGKQSSVVK 80
Cdd:PRK13734   1 MNAVLSVQGASAPVKKKSFF--SKFTRLNMLRLARAVIPVAVLMMFFPQLAMAGAGGQDLMASGNTTVKATFGKDSSVVK 78
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 490298994  81 WVVLAEVVAGGIMYMMTKNVKFLFGFAIISTFITIGMSVAGY 122
Cdd:PRK13734  79 WVVLAEVLVGAVMYMMTKNVKFLAGFAIISVFIAVGMSVVGL 120
TraA_TIGR TIGR02758
type IV conjugative transfer system pilin TraA; TraA is the single structural subunit of the ...
59-122 2.59e-18

type IV conjugative transfer system pilin TraA; TraA is the single structural subunit of the pilus found in type IV conjugative transfer systems. This family is generally found in gammaproteobacteria. The pilins show considerable heterogeneity among the different conjugative plasmit types. All of them however contain an N-terminal part which is cleaved off by a leader peptidase (LepB, or similar) to result in a 68-78 amino acid product. Pilins may be further processed by acetylation (in F-like systems by the TraX protein) or by cyclization (in P-like systems by the TraF protein).


Pssm-ID: 131805  Cd Length: 93  Bit Score: 73.68  E-value: 2.59e-18
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 490298994   59 DLMKSGDATVKGTFGKQSSVVKWVVLAEVVAGGIMYMMTKNVKFLF-GFAIISTFITIGMSVAGY 122
Cdd:TIGR02758  29 DLFAGGKATVKATAGKDSSVEMAMILAGLLVAAVMGFMTKNWFAALgGFAGGSIFWNVGMALVGL 93
 
Name Accession Description Interval E-value
TraA pfam05513
TraA; Conjugative transfer of a bacteriocin plasmid, pPD1, of Enterococcus faecalis is induced ...
1-120 7.69e-47

TraA; Conjugative transfer of a bacteriocin plasmid, pPD1, of Enterococcus faecalis is induced in response to a peptide sex pheromone, cPD1, secreted from plasmid-free recipient cells. cPD1 is taken up by a pPD1 donor cell and binds to an intracellular receptor, TraA. Once a recipient cell acquires pPD1, it starts to produce an inhibitor of cPD1, termed iPD1, which functions as a TraA antagonist and blocks self-induction in donor cells. TraA transduces the signal of cPD1 to the mating response.


Pssm-ID: 283228  Cd Length: 120  Bit Score: 146.74  E-value: 7.69e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490298994    1 MNAVLSVQGSAVSEKTKPSFMSRVFNKKKALKVAKVALPVAAVAAFFPDAAMATTTATDLMKSGDATVKGTFGKQSSVVK 80
Cdd:pfam05513   1 MNAILSVQGAAAPEKKKPSFLSRTFNKKKALKLAKAAIPAAALAAFFPDAAMAAGGAQDLMASGDATVKATFGKDSSAVK 80
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 490298994   81 WVVLAEVVAGGIMYMMTKNVKFLFGFAIISTFITIGMSVA 120
Cdd:pfam05513  81 WVILAEVLAGAIMYMMTKNVKFLAGFAIISTFIAIGMAVA 120
PRK13734 PRK13734
conjugal transfer pilin subunit TraA; Provisional
1-122 2.29e-38

conjugal transfer pilin subunit TraA; Provisional


Pssm-ID: 237485  Cd Length: 120  Bit Score: 125.43  E-value: 2.29e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490298994   1 MNAVLSVQGSAVSEKTKPSFmsRVFNKKKALKVAKVALPVAAVAAFFPDAAMATTTATDLMKSGDATVKGTFGKQSSVVK 80
Cdd:PRK13734   1 MNAVLSVQGASAPVKKKSFF--SKFTRLNMLRLARAVIPVAVLMMFFPQLAMAGAGGQDLMASGNTTVKATFGKDSSVVK 78
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 490298994  81 WVVLAEVVAGGIMYMMTKNVKFLFGFAIISTFITIGMSVAGY 122
Cdd:PRK13734  79 WVVLAEVLVGAVMYMMTKNVKFLAGFAIISVFIAVGMSVVGL 120
TraA_TIGR TIGR02758
type IV conjugative transfer system pilin TraA; TraA is the single structural subunit of the ...
59-122 2.59e-18

type IV conjugative transfer system pilin TraA; TraA is the single structural subunit of the pilus found in type IV conjugative transfer systems. This family is generally found in gammaproteobacteria. The pilins show considerable heterogeneity among the different conjugative plasmit types. All of them however contain an N-terminal part which is cleaved off by a leader peptidase (LepB, or similar) to result in a 68-78 amino acid product. Pilins may be further processed by acetylation (in F-like systems by the TraX protein) or by cyclization (in P-like systems by the TraF protein).


Pssm-ID: 131805  Cd Length: 93  Bit Score: 73.68  E-value: 2.59e-18
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 490298994   59 DLMKSGDATVKGTFGKQSSVVKWVVLAEVVAGGIMYMMTKNVKFLF-GFAIISTFITIGMSVAGY 122
Cdd:TIGR02758  29 DLFAGGKATVKATAGKDSSVEMAMILAGLLVAAVMGFMTKNWFAALgGFAGGSIFWNVGMALVGL 93
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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