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Conserved domains on  [gi|490300699|ref|WP_004196097|]
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MULTISPECIES: PGDYG domain-containing protein [Burkholderia]

Protein Classification

PGDYG domain-containing protein( domain architecture ID 10624093)

PGDYG domain-containing protein belongs to an uncharacterized bacterial protein family with a conserved PGDYG motif

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PGDYG pfam14083
PGDYG protein; This family of proteins is functionally uncharacterized. This family of ...
 40-141 1.37e-54

PGDYG protein; This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 150 amino acids in length. There is a conserved PGDYG motif.


:

Pssm-ID: 433704  Cd Length: 101  Bit Score: 166.58  E-value: 1.37e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490300699   40 GPNRYAAGDALVTGSTGDRWVVSRERFDAKYAPVAAGgAHGEPGAYRNRPAVVLAKRMDAPFSIARSAGGDTLRGDAGDW 119
Cdd:pfam14083   1 GPNRYAPGDAIVTGATGDRWVVSRDRFDARYQALKPL-AHGEVGAYRNRPIPVLAREMDAPFGIARSAGGDVLRGAPGDW 79

                          90       100
                  ....*....|....*....|..
gi 490300699  120 VMQYAPGDYGVVQAKRFAQVYR 141
Cdd:pfam14083  80 LMQYAPGDYGVVERARFAQVYR 101
 
Name Accession Description Interval E-value
PGDYG pfam14083
PGDYG protein; This family of proteins is functionally uncharacterized. This family of ...
 40-141 1.37e-54

PGDYG protein; This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 150 amino acids in length. There is a conserved PGDYG motif.


Pssm-ID: 433704  Cd Length: 101  Bit Score: 166.58  E-value: 1.37e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490300699   40 GPNRYAAGDALVTGSTGDRWVVSRERFDAKYAPVAAGgAHGEPGAYRNRPAVVLAKRMDAPFSIARSAGGDTLRGDAGDW 119
Cdd:pfam14083   1 GPNRYAPGDAIVTGATGDRWVVSRDRFDARYQALKPL-AHGEVGAYRNRPIPVLAREMDAPFGIARSAGGDVLRGAPGDW 79

                          90       100
                  ....*....|....*....|..
gi 490300699  120 VMQYAPGDYGVVQAKRFAQVYR 141
Cdd:pfam14083  80 LMQYAPGDYGVVERARFAQVYR 101
 
Name Accession Description Interval E-value
PGDYG pfam14083
PGDYG protein; This family of proteins is functionally uncharacterized. This family of ...
 40-141 1.37e-54

PGDYG protein; This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 150 amino acids in length. There is a conserved PGDYG motif.


Pssm-ID: 433704  Cd Length: 101  Bit Score: 166.58  E-value: 1.37e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490300699   40 GPNRYAAGDALVTGSTGDRWVVSRERFDAKYAPVAAGgAHGEPGAYRNRPAVVLAKRMDAPFSIARSAGGDTLRGDAGDW 119
Cdd:pfam14083   1 GPNRYAPGDAIVTGATGDRWVVSRDRFDARYQALKPL-AHGEVGAYRNRPIPVLAREMDAPFGIARSAGGDVLRGAPGDW 79

                          90       100
                  ....*....|....*....|..
gi 490300699  120 VMQYAPGDYGVVQAKRFAQVYR 141
Cdd:pfam14083  80 LMQYAPGDYGVVERARFAQVYR 101
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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