|
Name |
Accession |
Description |
Interval |
E-value |
| dnaA |
PRK00149 |
chromosomal replication initiator protein DnaA; |
1-533 |
0e+00 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 234667 [Multi-domain] Cd Length: 401 Bit Score: 644.11 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 1 MNDFWQHCSALLERELTPQQYVTWIKPLAPVAFDAaaNTLSIAAPNRFKLDWVKSQFSGRISDLArdfwnapievqfvld 80
Cdd:PRK00149 2 LQSLWEKVLERLKDELSEQEYETWIKPLKALSLED--NTLTLYVPNRFVKDWIEKNYLDLIEEAL--------------- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 81 pkagqrspagatplapraplpsanpapvgpgpacapavdahapapagmnaataaavaaaqaaqaaqanaaalnadeaadl 160
Cdd:PRK00149 --------------------------------------------------------------------------------
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 161 dlpsltaheaaagrrtwrpgaananseaadsmyersKLNPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGV 240
Cdd:PRK00149 65 ------------------------------------QLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGV 108
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 241 GLGKTHLIHAIGNQLLLDKPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFYAF 320
Cdd:PRK00149 109 GLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKERTQEEFFHTF 188
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 321 EALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQSEGVSLSEDVAFFVAKHLRSNVR 400
Cdd:PRK00149 189 NALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVR 268
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 401 ELEGALRKILAYSKFHGREITIELTKEALKDLLTVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLA 480
Cdd:PRK00149 269 ELEGALNRLIAYASLTGKPITLELAKEALKDLLAAQKKKITIENIQKVVAEYYNIKVSDLKSKSRTRNIARPRQIAMYLA 348
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|...
gi 490308407 481 KELTQKSLPEIGELFGGRDHTTVLHAVRKIADERGKDAQLNHELHVLEQTLKG 533
Cdd:PRK00149 349 KELTDLSLPEIGRAFGGRDHTTVLHAVRKIEKLLEEDPELKEDVEELKRKLKS 401
|
|
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
5-531 |
0e+00 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 629.56 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 5 WQHCSALLERELTPQQYVTWIKPLAPVAFDAaaNTLSIAAPNRFKLDWVKSQFSGRISDLARDFWNAPIEVQFVLDPKAG 84
Cdd:TIGR00362 1 WNRILERLEKELSEQEYNTWFKPLKLLSIEG--NTLIISVPNEFVKEWIEKNYLDLIEELLQELFGAEIEIEFTVGEDEE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 85 QRSPagatplapraplPSANPAPvgpgpacAPAVDAHAPAPagmnaataaavaaaqaaqaaqanaaalnadeaadldlps 164
Cdd:TIGR00362 79 ELEP------------NSKKPEP-------APPEAPAPPSS--------------------------------------- 100
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 165 ltaheaaagrrtwrpgaananseaadsmyeRSKLNPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGK 244
Cdd:TIGR00362 101 ------------------------------ASGLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGK 150
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 245 THLIHAIGNQLLLDKPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFYAFEALV 324
Cdd:TIGR00362 151 THLLHAIGNEILENNPNAKVLYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKERTQEEFFHTFNALH 230
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 325 ANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQSEGVSLSEDVAFFVAKHLRSNVRELEG 404
Cdd:TIGR00362 231 ENNKQIVLTSDRPPKELPGLEDRLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNITSNVRELEG 310
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 405 ALRKILAYSKFHGREITIELTKEALKDLLTVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELT 484
Cdd:TIGR00362 311 ALNRLLAYASLTGKPITLELAKEALKDLLRAQKKEITIENIQKVVAKYYNIKVSDLKSKKRTRNIVRPRQIAMYLAKELT 390
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 490308407 485 QKSLPEIGELFGGRDHTTVLHAVRKIADERGKDAQLNHELHVLEQTL 531
Cdd:TIGR00362 391 DLSLPEIGKAFGGRDHTTVLHAVRKIEKLIETDAELKEDIEELKRKL 437
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
198-500 |
0e+00 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 512.04 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 198 LNPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLDKPGARIRYIHAEQYVSDVV 277
Cdd:COG0593 1 LNPRYTFDNFVVGPSNRLAHAAALAVAEWPGKAYNPLFLYGGVGLGKTHLLHAIGNEALENNPGARVVYLTAEEFTNDFI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 278 KAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLT 357
Cdd:COG0593 81 NAIRNNTIEEFKEKYRSVDVLLIDDIQFLAGKEATQEEFFHTFNALREAGKQIVLTSDRPPKELPGLEERLRSRLEWGLV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 358 VAIEPPELEMRVAILMRKAQSEGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDLLTVQN 437
Cdd:COG0593 161 VDIQPPDLETRIAILRKKAADRGLELPDEVLEYLARRIERNVRELEGALNRLDAYALLTGRPITLELAREVLKDLLRAQK 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 490308407 438 RQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRDH 500
Cdd:COG0593 241 KEITIEDIQKAVAEYFGVSVADLLSKSRTREIARPRQIAMYLARELTDLSLPEIGRAFGGRDH 303
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
198-415 |
7.45e-107 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 318.50 E-value: 7.45e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 198 LNPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLDKPGARIRYIHAEQYVSDVV 277
Cdd:pfam00308 1 LNPRYTFENFVIGPSNRFAHAAALTVAKAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALQNAPNLRVVYLTAEEFLNDFV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 278 KAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLT 357
Cdd:pfam00308 81 DAIRDNKTNQFKEKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFNALHESGKQIVFSSDRPPKELEELEDRLRSRFQWGLV 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 490308407 358 VAIEPPELEMRVAILMRKAQSEGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKF 415
Cdd:pfam00308 161 TDIEPPDLETRLAILRKKAEAEGIEIPPEVLNFIAQRVTDNVRELEGALNRLLAYSSL 218
|
|
| Bac_DnaA_C |
cd06571 |
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA ... |
442-531 |
9.73e-43 |
|
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Pssm-ID: 119330 [Multi-domain] Cd Length: 90 Bit Score: 147.28 E-value: 9.73e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 442 VENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHAVRKIADERGKDAQLN 521
Cdd:cd06571 1 IELIIEAVAEYFGISVEDLRSKSRKKEIALARQIAMYLARELTGLSLPEIGRAFGGRDHSTVLHAVRKIEELLEEDPELK 80
|
90
....*....|
gi 490308407 522 HELHVLEQTL 531
Cdd:cd06571 81 EDVEELEKKL 90
|
|
| Bac_DnaA_C |
smart00760 |
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding. |
441-509 |
2.71e-36 |
|
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding.
Pssm-ID: 197863 [Multi-domain] Cd Length: 69 Bit Score: 129.17 E-value: 2.71e-36
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 490308407 441 SVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHAVRK 509
Cdd:smart00760 1 TIEEIIEAVAEYFGVKPEDLKSKSRKREIVLARQIAMYLARELTDLSLPEIGKIFGGRDHSTVLHACRK 69
|
|
| PHA02682 |
PHA02682 |
ORF080 virion core protein; Provisional |
86-126 |
4.32e-07 |
|
ORF080 virion core protein; Provisional
Pssm-ID: 177464 [Multi-domain] Cd Length: 280 Bit Score: 51.79 E-value: 4.32e-07
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 490308407 86 RSPAGATPLAPRAPLPSANPAPVGPGPAC-APAVDAHAPAPA 126
Cdd:PHA02682 74 QRPSGQSPLAPSPACAAPAPACPACAPAApAPAVTCPAPAPA 115
|
|
| IS21_help_AAA |
NF038214 |
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was ... |
236-334 |
1.55e-06 |
|
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was built to hit full-length AAA+ ATPases of IS21 family IS (insertion sequence) elements.
Pssm-ID: 439516 Cd Length: 232 Bit Score: 49.39 E-value: 1.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 236 LYGGVGLGKTHLIHAIGNQLLLDkpGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSgKSRTQEE 315
Cdd:NF038214 95 LLGPPGTGKTHLAIALGYAACRQ--GYRVRFTTAADLVEQLAQARADGRLGRLLRRLARYDLLIIDELGYLP-FSREGAN 171
|
90 100
....*....|....*....|..
gi 490308407 316 FFyaFEaLVAN---KAQVIITS 334
Cdd:NF038214 172 LL--FE-LIADryeRGSTIITS 190
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| dnaA |
PRK00149 |
chromosomal replication initiator protein DnaA; |
1-533 |
0e+00 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 234667 [Multi-domain] Cd Length: 401 Bit Score: 644.11 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 1 MNDFWQHCSALLERELTPQQYVTWIKPLAPVAFDAaaNTLSIAAPNRFKLDWVKSQFSGRISDLArdfwnapievqfvld 80
Cdd:PRK00149 2 LQSLWEKVLERLKDELSEQEYETWIKPLKALSLED--NTLTLYVPNRFVKDWIEKNYLDLIEEAL--------------- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 81 pkagqrspagatplapraplpsanpapvgpgpacapavdahapapagmnaataaavaaaqaaqaaqanaaalnadeaadl 160
Cdd:PRK00149 --------------------------------------------------------------------------------
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 161 dlpsltaheaaagrrtwrpgaananseaadsmyersKLNPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGV 240
Cdd:PRK00149 65 ------------------------------------QLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGV 108
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 241 GLGKTHLIHAIGNQLLLDKPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFYAF 320
Cdd:PRK00149 109 GLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKERTQEEFFHTF 188
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 321 EALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQSEGVSLSEDVAFFVAKHLRSNVR 400
Cdd:PRK00149 189 NALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVR 268
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 401 ELEGALRKILAYSKFHGREITIELTKEALKDLLTVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLA 480
Cdd:PRK00149 269 ELEGALNRLIAYASLTGKPITLELAKEALKDLLAAQKKKITIENIQKVVAEYYNIKVSDLKSKSRTRNIARPRQIAMYLA 348
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|...
gi 490308407 481 KELTQKSLPEIGELFGGRDHTTVLHAVRKIADERGKDAQLNHELHVLEQTLKG 533
Cdd:PRK00149 349 KELTDLSLPEIGRAFGGRDHTTVLHAVRKIEKLLEEDPELKEDVEELKRKLKS 401
|
|
| DnaA |
TIGR00362 |
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ... |
5-531 |
0e+00 |
|
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273037 [Multi-domain] Cd Length: 437 Bit Score: 629.56 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 5 WQHCSALLERELTPQQYVTWIKPLAPVAFDAaaNTLSIAAPNRFKLDWVKSQFSGRISDLARDFWNAPIEVQFVLDPKAG 84
Cdd:TIGR00362 1 WNRILERLEKELSEQEYNTWFKPLKLLSIEG--NTLIISVPNEFVKEWIEKNYLDLIEELLQELFGAEIEIEFTVGEDEE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 85 QRSPagatplapraplPSANPAPvgpgpacAPAVDAHAPAPagmnaataaavaaaqaaqaaqanaaalnadeaadldlps 164
Cdd:TIGR00362 79 ELEP------------NSKKPEP-------APPEAPAPPSS--------------------------------------- 100
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 165 ltaheaaagrrtwrpgaananseaadsmyeRSKLNPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGK 244
Cdd:TIGR00362 101 ------------------------------ASGLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGK 150
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 245 THLIHAIGNQLLLDKPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFYAFEALV 324
Cdd:TIGR00362 151 THLLHAIGNEILENNPNAKVLYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKERTQEEFFHTFNALH 230
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 325 ANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQSEGVSLSEDVAFFVAKHLRSNVRELEG 404
Cdd:TIGR00362 231 ENNKQIVLTSDRPPKELPGLEDRLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNITSNVRELEG 310
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 405 ALRKILAYSKFHGREITIELTKEALKDLLTVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELT 484
Cdd:TIGR00362 311 ALNRLLAYASLTGKPITLELAKEALKDLLRAQKKEITIENIQKVVAKYYNIKVSDLKSKKRTRNIVRPRQIAMYLAKELT 390
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 490308407 485 QKSLPEIGELFGGRDHTTVLHAVRKIADERGKDAQLNHELHVLEQTL 531
Cdd:TIGR00362 391 DLSLPEIGKAFGGRDHTTVLHAVRKIEKLIETDAELKEDIEELKRKL 437
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
198-500 |
0e+00 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 512.04 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 198 LNPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLDKPGARIRYIHAEQYVSDVV 277
Cdd:COG0593 1 LNPRYTFDNFVVGPSNRLAHAAALAVAEWPGKAYNPLFLYGGVGLGKTHLLHAIGNEALENNPGARVVYLTAEEFTNDFI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 278 KAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLT 357
Cdd:COG0593 81 NAIRNNTIEEFKEKYRSVDVLLIDDIQFLAGKEATQEEFFHTFNALREAGKQIVLTSDRPPKELPGLEERLRSRLEWGLV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 358 VAIEPPELEMRVAILMRKAQSEGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDLLTVQN 437
Cdd:COG0593 161 VDIQPPDLETRIAILRKKAADRGLELPDEVLEYLARRIERNVRELEGALNRLDAYALLTGRPITLELAREVLKDLLRAQK 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 490308407 438 RQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRDH 500
Cdd:COG0593 241 KEITIEDIQKAVAEYFGVSVADLLSKSRTREIARPRQIAMYLARELTDLSLPEIGRAFGGRDH 303
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
198-415 |
7.45e-107 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 318.50 E-value: 7.45e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 198 LNPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLDKPGARIRYIHAEQYVSDVV 277
Cdd:pfam00308 1 LNPRYTFENFVIGPSNRFAHAAALTVAKAPGKAYNPLFIYGGVGLGKTHLLHAIGNYALQNAPNLRVVYLTAEEFLNDFV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 278 KAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLT 357
Cdd:pfam00308 81 DAIRDNKTNQFKEKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFNALHESGKQIVFSSDRPPKELEELEDRLRSRFQWGLV 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 490308407 358 VAIEPPELEMRVAILMRKAQSEGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKF 415
Cdd:pfam00308 161 TDIEPPDLETRLAILRKKAEAEGIEIPPEVLNFIAQRVTDNVRELEGALNRLLAYSSL 218
|
|
| dnaA |
PRK14086 |
chromosomal replication initiator protein DnaA; |
18-510 |
6.01e-97 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 237605 [Multi-domain] Cd Length: 617 Bit Score: 306.75 E-value: 6.01e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 18 PQQYVTWIKPLAPVAFdaAANTLSIAAPNRFKLDWVKSQFSGRISD-LARDFwNAPIEVQFVLDPKAGQrsPAGATPLAP 96
Cdd:PRK14086 29 PAKDEAWLKRCQPLAL--VADTALLAVPNEFAKEVLEGRLAPIISEtLSREL-GRPIRIAITVDPSAGE--PAPPPPHAR 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 97 RAP--------------------------------LPSANPA------PVGPGPACAPAVDA------HAPAPAGMNAAT 132
Cdd:PRK14086 104 RTSepelprpgrrpyegyggpraddrppglprqdqLPTARPAypayqqRPEPGAWPRAADDYgwqqqrLGFPPRAPYASP 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 133 AAAVAAAQAAQAAQANAAALNADEAADLDLPSLTAHEAAAGRRT--WRPGAANANSEAADSMYER--------------- 195
Cdd:PRK14086 184 ASYAPEQERDREPYDAGRPEYDQRRRDYDHPRPDWDRPRRDRTDrpEPPPGAGHVHRGGPGPPERddapvvpirpsapgp 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 196 ---------------SKLNPVLTFDNFVTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLDKP 260
Cdd:PRK14086 264 laaqpapapgpgeptARLNPKYTFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYP 343
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 261 GARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFYAFEAL-VANKaQVIITSDTYPK 339
Cdd:PRK14086 344 GTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKESTQEEFFHTFNTLhNANK-QIVLSSDRPPK 422
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 340 EISGIDDRLISRFDSGLTVAIEPPELEMRVAILMRKAQSEGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGRE 419
Cdd:PRK14086 423 QLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQP 502
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 420 ITIELTKEALKDLL-TVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFgGR 498
Cdd:PRK14086 503 VDLGLTEIVLRDLIpEDSAPEITAAAIMAATADYFGLTVEDLCGTSRSRVLVTARQIAMYLCRELTDLSLPKIGQQF-GR 581
|
570
....*....|..
gi 490308407 499 DHTTVLHAVRKI 510
Cdd:PRK14086 582 DHTTVMHADRKI 593
|
|
| PRK12422 |
PRK12422 |
chromosomal replication initiator protein DnaA; |
198-517 |
1.85e-63 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 183521 [Multi-domain] Cd Length: 445 Bit Score: 213.93 E-value: 1.85e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 198 LNPVLTFDNFVTGKANQLARAAAIQVA----DNPGISYNPLFLYGGVGLGKTHLIHAIGNqlLLDKPGARIRYIHAEQYV 273
Cdd:PRK12422 104 LDPLMTFANFLVTPENDLPHRILQEFTkvseQGKGFPFNPIYLFGPEGSGKTHLMQAAVH--ALRESGGKILYVRSELFT 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 274 SDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFD 353
Cdd:PRK12422 182 EHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFE 261
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 354 SGLTVAIEP-PELEMRvAILMRKAQSEGVSLSEDVAFFVAKHLRSNVRELEGALR---KILAYSKFHGREITIELTKEAL 429
Cdd:PRK12422 262 WGIAIPLHPlTKEGLR-SFLERKAEALSIRIEETALDFLIEALSSNVKSLLHALTllaKRVAYKKLSHQLLYVDDIKALL 340
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 430 KDLLTV-QNRQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFgGRDHTTVLHAVR 508
Cdd:PRK12422 341 HDVLEAaESVRLTPSKIIRAVAQYYGVSPESILGRSQSREYVLPRQVAMYLCRQKLSLSYVKIGDVF-SRDHSTVISSIR 419
|
330
....*....|..
gi 490308407 509 KIA---DERGKD 517
Cdd:PRK12422 420 AISqklEEDDRD 431
|
|
| Bac_DnaA_C |
cd06571 |
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA ... |
442-531 |
9.73e-43 |
|
C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Pssm-ID: 119330 [Multi-domain] Cd Length: 90 Bit Score: 147.28 E-value: 9.73e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 442 VENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHAVRKIADERGKDAQLN 521
Cdd:cd06571 1 IELIIEAVAEYFGISVEDLRSKSRKKEIALARQIAMYLARELTGLSLPEIGRAFGGRDHSTVLHAVRKIEELLEEDPELK 80
|
90
....*....|
gi 490308407 522 HELHVLEQTL 531
Cdd:cd06571 81 EDVEELEKKL 90
|
|
| Bac_DnaA_C |
pfam08299 |
Bacterial dnaA protein helix-turn-helix; |
442-510 |
1.62e-39 |
|
Bacterial dnaA protein helix-turn-helix;
Pssm-ID: 462419 [Multi-domain] Cd Length: 69 Bit Score: 137.92 E-value: 1.62e-39
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 490308407 442 VENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHAVRKI 510
Cdd:pfam08299 1 IEKIIEAVAEYFGISPEDLKSKSRKREIALARQIAMYLARELTDLSLPEIGRAFGGRDHSTVIHACKKI 69
|
|
| Bac_DnaA_C |
smart00760 |
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding. |
441-509 |
2.71e-36 |
|
Bacterial dnaA protein helix-turn-helix domain; Could be involved in DNA-binding.
Pssm-ID: 197863 [Multi-domain] Cd Length: 69 Bit Score: 129.17 E-value: 2.71e-36
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 490308407 441 SVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHAVRK 509
Cdd:smart00760 1 TIEEIIEAVAEYFGVKPEDLKSKSRKREIVLARQIAMYLARELTDLSLPEIGKIFGGRDHSTVLHACRK 69
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
211-354 |
3.99e-17 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 78.34 E-value: 3.99e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 211 KANQLARAAAIQVADNPgiSYNPLFLYGGVGLGKTHLIHAIGNQLLldKPGARIRYIHAEQYVSDVVKA----YQRKAFD 286
Cdd:cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAelfgHFLVRLL 76
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 490308407 287 DFKRYYHSLDLLLIDDIQFFS-GKSRTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDS 354
Cdd:cd00009 77 FELAEKAKPGVLFIDEIDSLSrGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDI 145
|
|
| DnaA_N |
pfam11638 |
DnaA N-terminal domain; This family of proteins represents the N-terminal domain of DnaA, a ... |
2-67 |
2.48e-16 |
|
DnaA N-terminal domain; This family of proteins represents the N-terminal domain of DnaA, a protein involved in the initiation of bacterial chromosomal replication. The structure of this domain is known. It is also found in three copies in some proteins. The exact function of this domain is uncertain but it has been suggested to play a role in oligomerization.
Pssm-ID: 463316 [Multi-domain] Cd Length: 65 Bit Score: 73.47 E-value: 2.48e-16
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 490308407 2 NDFWQHCSALLERELTPQQYVTWIKPLAPVAFDAAANtLSIAAPNRFKLDWVKSQFSGRISDLARD 67
Cdd:pfam11638 1 EELWERVLERLRKEVGEQTFNTWIKPLTLVDLDDGGS-LTLSVPNRFVRDWVEEHYLDRILELWQE 65
|
|
| PRK08084 |
PRK08084 |
DnaA inactivator Hda; |
203-430 |
2.54e-16 |
|
DnaA inactivator Hda;
Pssm-ID: 181224 [Multi-domain] Cd Length: 235 Bit Score: 78.57 E-value: 2.54e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 203 TFDNFVTGKANQLAraAAIQ-VADNPGISYnpLFLYGGVGLGKTHLIHAIGNQLllDKPGARIRY----IHAeQYVSDVV 277
Cdd:PRK08084 20 TFASFYPGDNDSLL--AALQnALRQEHSGY--IYLWSREGAGRSHLLHAACAEL--SQRGRAVGYvpldKRA-WFVPEVL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 278 KAYQrkafddfkryyhSLDLLLIDDIQFFSGKSRTQEEFFYAFEALVANK-AQVIITSDTYPKEIS-GIDDrLISRFDSG 355
Cdd:PRK08084 93 EGME------------QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGrTRLLITGDRPPRQLNlGLPD-LASRLDWG 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 490308407 356 LTVAIEPPELEMRVAILMRKAQSEGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALK 430
Cdd:PRK08084 160 QIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 234
|
|
| PRK08903 |
PRK08903 |
DnaA regulatory inactivator Hda; Validated |
203-433 |
3.39e-12 |
|
DnaA regulatory inactivator Hda; Validated
Pssm-ID: 236347 [Multi-domain] Cd Length: 227 Bit Score: 66.15 E-value: 3.39e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 203 TFDNFVTGK-ANQLARAAAIQVADNPGISYnplFLYGGVGLGKTHLIHAIGNQLLldKPGARIRYIHAEQyvsdvvkayq 281
Cdd:PRK08903 16 TFDNFVAGEnAELVARLRELAAGPVADRFF---YLWGEAGSGRSHLLQALVADAS--YGGRNARYLDAAS---------- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 282 RKAFDDFKRyyhSLDLLLIDDIQFFSGKSrtQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIE 361
Cdd:PRK08903 81 PLLAFDFDP---EAELYAVDDVERLDDAQ--QIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELK 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490308407 362 PPELEMRVAILMRKAQSEGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDLL 433
Cdd:PRK08903 156 PLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDALDRYSLEQKRPVTLPLLREMLAQPE 227
|
|
| PRK06835 |
PRK06835 |
DNA replication protein DnaC; Validated |
193-353 |
6.97e-10 |
|
DNA replication protein DnaC; Validated
Pssm-ID: 235871 [Multi-domain] Cd Length: 329 Bit Score: 60.68 E-value: 6.97e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 193 YERSKLNPVL---TFDNF--------VTGKANQLARA----------AAIQVADNPGISynpLFLYGGVGLGKTHLIHAI 251
Cdd:PRK06835 127 YKQSNLKEILkeeNFSNFnlnyysdeKDDDEPLSPRKnmekilekckNFIENFDKNNEN---LLFYGNTGTGKTFLSNCI 203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 252 GNQlLLDKpGARIRYIHAEQYVsDVVKAYQRKAFDDFKRYYHSL---DLLLIDDIQFFSGKSRTQEEFFYAF-EALVANK 327
Cdd:PRK06835 204 AKE-LLDR-GKSVIYRTADELI-EILREIRFNNDKELEEVYDLLincDLLIIDDLGTEKITEFSKSELFNLInKRLLRQK 280
|
170 180 190
....*....|....*....|....*....|...
gi 490308407 328 AQVIIT-------SDTYPKEISGiddRLISRFD 353
Cdd:PRK06835 281 KMIISTnlsleelLKTYSERISS---RLLGNFT 310
|
|
| DnaC |
COG1484 |
DNA replication protein DnaC [Replication, recombination and repair]; |
195-334 |
2.49e-09 |
|
DNA replication protein DnaC [Replication, recombination and repair];
Pssm-ID: 441093 [Multi-domain] Cd Length: 242 Bit Score: 57.87 E-value: 2.49e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 195 RSKLNPVLTFDNFVTGKANQLARAAAIQVADNPGIS-YNPLFLYGGVGLGKTHLIHAIGNQLLLDkpGARIRYIHAEQYV 273
Cdd:COG1484 62 AARFPAAKTLEDFDFDAQPGLDRRQILELATLDFIErGENLILLGPPGTGKTHLAIALGHEACRA--GYRVRFTTAPDLV 139
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490308407 274 SDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFYAFEALVANKAqVIITS 334
Cdd:COG1484 140 NELKEARADGRLERLLKRLAKVDLLILDELGYLPLDAEGAELLFELISDRYERRS-TIITS 199
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
232-353 |
1.77e-08 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 53.53 E-value: 1.77e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 232 NPLFLYGGVGLGKTHLIHAIGNQllLDKPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRY---------------YHSLD 296
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASgsgelrlrlalalarKLKPD 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490308407 297 LLLIDDIQFFSGKSRTQEEFFYAFEALVANKA-----QVIITSDTYPKEISGIddrLISRFD 353
Cdd:smart00382 81 VLILDEITSLLDAEQEALLLLLEELRLLLLLKseknlTVILTTNDEKDLGPAL---LRRRFD 139
|
|
| PRK06030 |
PRK06030 |
hypothetical protein; Provisional |
458-533 |
1.34e-07 |
|
hypothetical protein; Provisional
Pssm-ID: 180356 Cd Length: 124 Bit Score: 50.55 E-value: 1.34e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 490308407 458 ADMYSKKRPANIA-RPRQIAMYLAKELTQKSLPEIGELFGgRDHTTVLHAVRKIADERgKDAQLNHELHVLEQTLKG 533
Cdd:PRK06030 41 AEIASPLRGRREVsRIRQIAMYVAHVSLGWPMNEVALAFG-RDRTTVGHACHTVEDLR-DDAAFDARVSVLERIVNS 115
|
|
| PRK08116 |
PRK08116 |
hypothetical protein; Validated |
203-351 |
2.21e-07 |
|
hypothetical protein; Validated
Pssm-ID: 236153 [Multi-domain] Cd Length: 268 Bit Score: 52.33 E-value: 2.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 203 TFDNF-VTGKANQLARAAAIQV-------ADNPGisynpLFLYGGVGLGKTHLIHAIGNQLLldKPGARIRYIHAEQYVS 274
Cdd:PRK08116 83 TFENFlFDKGSEKAYKIARKYVkkfeemkKENVG-----LLLWGSVGTGKTYLAACIANELI--EKGVPVIFVNFPQLLN 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 275 DVVKAYQRKAFDDFKRYYHSL---DLLLIDDIQFFSGKSRTQEEFFYAFEALVANKAQVIITSDTYPKEI-SGIDDRLIS 350
Cdd:PRK08116 156 RIKSTYKSSGKEDENEIIRSLvnaDLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLSLEELkNQYGKRIYD 235
|
.
gi 490308407 351 R 351
Cdd:PRK08116 236 R 236
|
|
| PHA02682 |
PHA02682 |
ORF080 virion core protein; Provisional |
86-126 |
4.32e-07 |
|
ORF080 virion core protein; Provisional
Pssm-ID: 177464 [Multi-domain] Cd Length: 280 Bit Score: 51.79 E-value: 4.32e-07
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 490308407 86 RSPAGATPLAPRAPLPSANPAPVGPGPAC-APAVDAHAPAPA 126
Cdd:PHA02682 74 QRPSGQSPLAPSPACAAPAPACPACAPAApAPAVTCPAPAPA 115
|
|
| IS21_help_AAA |
NF038214 |
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was ... |
236-334 |
1.55e-06 |
|
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was built to hit full-length AAA+ ATPases of IS21 family IS (insertion sequence) elements.
Pssm-ID: 439516 Cd Length: 232 Bit Score: 49.39 E-value: 1.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 236 LYGGVGLGKTHLIHAIGNQLLLDkpGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSgKSRTQEE 315
Cdd:NF038214 95 LLGPPGTGKTHLAIALGYAACRQ--GYRVRFTTAADLVEQLAQARADGRLGRLLRRLARYDLLIIDELGYLP-FSREGAN 171
|
90 100
....*....|....*....|..
gi 490308407 316 FFyaFEaLVAN---KAQVIITS 334
Cdd:NF038214 172 LL--FE-LIADryeRGSTIITS 190
|
|
| PRK06620 |
PRK06620 |
hypothetical protein; Validated |
279-430 |
6.72e-06 |
|
hypothetical protein; Validated
Pssm-ID: 168630 Cd Length: 214 Bit Score: 47.14 E-value: 6.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 279 AYQRKAFDDFKRYYHSLDLLLIDDIQffsgkSRTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDdrLISRFDSGLTV 358
Cdd:PRK06620 70 AYIIKDIFFNEEILEKYNAFIIEDIE-----NWQEPALLHIFNIINEKQKYLLLTSSDKSRNFTLPD--LSSRIKSVLSI 142
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 490308407 359 AIEPPELEMrVAILMRKAQSE-GVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALK 430
Cdd:PRK06620 143 LLNSPDDEL-IKILIFKHFSIsSVTISRQIIDFLLVNLPREYSKIIEILENINYFALISKRKITISLVKEVLN 214
|
|
| CDC6 |
COG1474 |
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair]; |
228-392 |
9.55e-05 |
|
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair];
Pssm-ID: 441083 [Multi-domain] Cd Length: 389 Bit Score: 44.84 E-value: 9.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 228 GISYNPLFLYGGVGLGKTHLIHAIGNQL--LLDKPGARIRYIH--AEQY------VSDVVKAYQRK--------AFDD-F 288
Cdd:COG1474 48 GERPSNVLIYGPTGTGKTAVAKYVLEELeeEAEERGVDVRVVYvnCRQAstryrvLSRILEELGSGedipstglSTDElF 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 289 KRYYHSLD-----LLLI-DDIQFFSGKSRtqEEFFY----AFEALVANKAQVI-ITSDtyPKEISGIDDRLISRFdSGLT 357
Cdd:COG1474 128 DRLYEALDerdgvLVVVlDEIDYLVDDEG--DDLLYqllrANEELEGARVGVIgISND--LEFLENLDPRVKSSL-GEEE 202
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 490308407 358 VAIEP---PELemrVAILMRKAQ---SEGVsLSEDVAFFVA 392
Cdd:COG1474 203 IVFPPydaDEL---RDILEDRAElafYDGV-LSDEVIPLIA 239
|
|
| PRK06921 |
PRK06921 |
hypothetical protein; Provisional |
202-351 |
1.14e-04 |
|
hypothetical protein; Provisional
Pssm-ID: 180750 [Multi-domain] Cd Length: 266 Bit Score: 44.00 E-value: 1.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 202 LTFDNFVTGKANQLARAA---AIQ-VADNPGIS---YNPLFLYGGVGLGKTHLIHAIGNQlLLDKPGARIRYIhaeQYVs 274
Cdd:PRK06921 81 LTFKNFKTEGKPQAIKDAyecAVEyVKDFEKIQesrKNSIALLGQPGSGKTHLLTAAANE-LMRKKGVPVLYF---PFV- 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 275 dvvkayqrKAFDDFKRYYHSL----------DLLLIDDI-QFFSGKSRTQE-EFFYAFEAL---VANKAQVIITSDTYPK 339
Cdd:PRK06921 156 --------EGFGDLKDDFDLLeaklnrmkkvEVLFIDDLfKPVNGKPRATEwQIEQMYSVLnyrYLNHKPILISSELTID 227
|
170
....*....|..
gi 490308407 340 EISGIDDRLISR 351
Cdd:PRK06921 228 ELLDIDEALGSR 239
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
234-353 |
1.40e-04 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 41.81 E-value: 1.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 234 LFLYGGVGLGKTHLIHAIGNQLlldkpGARIRYIHA----EQYVSDVVKAyQRKAFDDFKRyyHSLDLLLIDDI------ 303
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAVAKEL-----GAPFIEISGselvSKYVGESEKR-LRELFEAAKK--LAPCVIFIDEIdalags 72
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 490308407 304 ---QFFSGKSRTQEEFFYAFEALVANKAQVI-ITSDTYPKEisgIDDRLISRFD 353
Cdd:pfam00004 73 rgsGGDSESRRVVNQLLTELDGFTSSNSKVIvIAATNRPDK---LDPALLGRFD 123
|
|
| PRK12377 |
PRK12377 |
putative replication protein; Provisional |
189-303 |
5.57e-04 |
|
putative replication protein; Provisional
Pssm-ID: 183482 [Multi-domain] Cd Length: 248 Bit Score: 41.74 E-value: 5.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 189 ADSMYERSKLNPV---LTFDNF-VTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLldKPGARI 264
Cdd:PRK12377 55 VEKILNRSGIQPLhrkCSFANYqVQNDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLL--AKGRSV 132
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 490308407 265 RYIhaeqYVSDVVKAYqRKAFDD------FKRYYHSLDLLLIDDI 303
Cdd:PRK12377 133 IVV----TVPDVMSRL-HESYDNgqsgekFLQELCKVDLLVLDEI 172
|
|
| IstB_IS21 |
pfam01695 |
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is ... |
196-335 |
7.69e-04 |
|
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Pssm-ID: 426385 [Multi-domain] Cd Length: 238 Bit Score: 41.28 E-value: 7.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 196 SKLNPVLTFDNFvtgKANQLARAAAIQVADNPGISY-----NPLFLyGGVGLGKTHLIHAIGNQLLldKPGARIRYIHAE 270
Cdd:pfam01695 56 AKLPPHKTLEDF---DFTFAPGLDQRIVAELASLSFidraqNVVLL-GPPGVGKTHLAIALGVEAC--RAGYSVRFTSAA 129
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 490308407 271 QYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDI--QFFSgksrtQEEFFYAFEALVA--NKAQVIITSD 335
Cdd:pfam01695 130 DLVNQLKRAHGDGKLTRKLQQLLKPDVLILDEWgyLPLD-----QAEANLLFQVISKryEHRSIILTSN 193
|
|
| PRK07952 |
PRK07952 |
DNA replication protein DnaC; Validated |
195-303 |
2.57e-03 |
|
DNA replication protein DnaC; Validated
Pssm-ID: 181180 [Multi-domain] Cd Length: 244 Bit Score: 39.75 E-value: 2.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 195 RSKLNPV---LTFDNF-VTGKANQLARAAAIQVADNPGISYNPLFLYGGVGLGKTHLIHAIGNQLLLDkpGARIRYIHAE 270
Cdd:PRK07952 59 RSGIRPLhqnCSFENYrVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR--GKSVLIITVA 136
|
90 100 110
....*....|....*....|....*....|....*
gi 490308407 271 QYVSDVVKAYQRKAFDDFK--RYYHSLDLLLIDDI 303
Cdd:PRK07952 137 DIMSAMKDTFSNSETSEEQllNDLSNVDLLVIDEI 171
|
|
| AFG1_ATPase |
pfam03969 |
AFG1-like ATPase; This P-loop motif-containing family of proteins includes AFG1, LACE1 and ... |
164-341 |
3.05e-03 |
|
AFG1-like ATPase; This P-loop motif-containing family of proteins includes AFG1, LACE1 and ZapE. ATPase family gene 1 (AFG1) is a 377 amino acid yeast protein with an ATPase motif typical of the family. LACE1, the mammalian homolog of AFG1, is a mitochondrial integral membrane protein that is essential for maintenance of fused mitochondrial reticulum and lamellar cristae morphology. It has also been demonstrated that LACE1 mediates degradation of nuclear-encoded complex IV subunits COX4 (cytochrome c oxidase 4), COX5A and COX6A, and is required for normal activity of complexes III and IV of the respiratory chain. ZapE is a cell division protein found in Gram-negative bacteria. The bacterial cell division process relies on the assembly, positioning, and constriction of FtsZ ring (the so-called Z-ring), a ring-like network that marks the future site of the septum of bacterial cell division. ZapE is a Z-ring associated protein required for cell division under low-oxygen conditions. It is an ATPase that appears at the constricting Z-ring late in cell division. It reduces the stability of FtsZ polymers in the presence of ATP in vitro.
Pssm-ID: 397872 Cd Length: 361 Bit Score: 39.79 E-value: 3.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 164 SLTAHEAAAGRRTWRPGAANANS-EAADSMYER----SKLNPVLTFDNFVTGKANQLaraaaiqvadnPGISynpLFLYG 238
Cdd:pfam03969 3 PPVRYIADLQRPDFFPDVAQANAvPHLDRLYQDlaaqDFPRPARAGGKLWGRKPSVQ-----------PPRG---LYLWG 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 239 GVGLGKTHLIHAIGNQLlldkPGARIRYIHaeqyvsdvVKAYQRKAFDDFKRYYHSLDLLLIdDIQFFSGKSRTQ--EEF 316
Cdd:pfam03969 69 GVGRGKTWLMDLFFESL----PGEKKRRTH--------FHRFMFRVHDELTTLQGGVDPLAI-IADRLAGEARLLcfDEF 135
|
170 180 190
....*....|....*....|....*....|....*.
gi 490308407 317 FYA-----------FEALVANKAQVIITSDTYPKEI 341
Cdd:pfam03969 136 FVSdigdamllgrlFEALFARGVTLVATSNIAPEQL 171
|
|
| PRK08939 |
PRK08939 |
primosomal protein DnaI; Reviewed |
213-303 |
4.97e-03 |
|
primosomal protein DnaI; Reviewed
Pssm-ID: 236353 [Multi-domain] Cd Length: 306 Bit Score: 39.08 E-value: 4.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490308407 213 NQLARAAAIQVADNPGISYNP------LFLYGGVGLGKTHLIHAIGNQllLDKPGARIRYIHAEQYVSDVVKAYQRKAFD 286
Cdd:PRK08939 132 DDRDRLDALMAALDFLEAYPPgekvkgLYLYGDFGVGKSYLLAAIANE--LAKKGVSSTLLHFPEFIRELKNSISDGSVK 209
|
90
....*....|....*..
gi 490308407 287 DFKRYYHSLDLLLIDDI 303
Cdd:PRK08939 210 EKIDAVKEAPVLMLDDI 226
|
|
| |
