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Conserved domains on  [gi|490323919|ref|WP_004213390|]
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hypothetical protein [Sphingobium yanoikuyae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RHH_8 super family cl46792
Ribbon-Helix-Helix transcriptional regulator family; This family of proteins are likely to be ...
 37-115 1.18e-03

Ribbon-Helix-Helix transcriptional regulator family; This family of proteins are likely to be transcriptional regulators that have an N-terminal ribbon-helix-helix domain. Although some members of the family are annotated as CopG, this family does not include that protein.


The actual alignment was detected with superfamily member COG3609:

Pssm-ID: 481132  Cd Length: 77  Bit Score: 35.18  E-value: 1.18e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 490323919  37 LPGDMADWLLAQVEQGHFVDPSEAVFAIVKNFIEmephRDLRDELLRRILDASIKSGLEDEkagrtyDLDEVFDELRRE 115
Cdd:COG3609    7 LPDELEDFIDEQVESGRYASASEVIREALRLLEE----REAKLEALRAALDEGLASGEAEP------FADDVLAELRAR 75
 
Name Accession Description Interval E-value
ParD COG3609
Transcriptional regulator, contains Arc/MetJ-type RHH (ribbon-helix-helix) DNA-binding domain ...
 37-115 1.18e-03

Transcriptional regulator, contains Arc/MetJ-type RHH (ribbon-helix-helix) DNA-binding domain [Transcription];


Pssm-ID: 442827  Cd Length: 77  Bit Score: 35.18  E-value: 1.18e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 490323919  37 LPGDMADWLLAQVEQGHFVDPSEAVFAIVKNFIEmephRDLRDELLRRILDASIKSGLEDEkagrtyDLDEVFDELRRE 115
Cdd:COG3609    7 LPDELEDFIDEQVESGRYASASEVIREALRLLEE----REAKLEALRAALDEGLASGEAEP------FADDVLAELRAR 75
 
Name Accession Description Interval E-value
ParD COG3609
Transcriptional regulator, contains Arc/MetJ-type RHH (ribbon-helix-helix) DNA-binding domain ...
 37-115 1.18e-03

Transcriptional regulator, contains Arc/MetJ-type RHH (ribbon-helix-helix) DNA-binding domain [Transcription];


Pssm-ID: 442827  Cd Length: 77  Bit Score: 35.18  E-value: 1.18e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 490323919  37 LPGDMADWLLAQVEQGHFVDPSEAVFAIVKNFIEmephRDLRDELLRRILDASIKSGLEDEkagrtyDLDEVFDELRRE 115
Cdd:COG3609    7 LPDELEDFIDEQVESGRYASASEVIREALRLLEE----REAKLEALRAALDEGLASGEAEP------FADDVLAELRAR 75
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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