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Conserved domains on  [gi|490358217|ref|WP_004237990|]
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MULTISPECIES: amino acid ABC transporter permease [Morganella]

Protein Classification

amino acid ABC transporter permease( domain architecture ID 11433582)

amino acid ABC transporter permease is the transmembrane (TM) subunit of a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter which binds and transports amino acids

Gene Ontology:  GO:0140359|GO:0042626|GO:0006865
PubMed:  25750732|24638992
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 1-227 7.46e-71

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


:

Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 216.48  E-value: 7.46e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217   1 MDFSVIRDNWEYLLfgtfpdgplEGAALTLVISLIAGAISVVLGTIGGVMLAMLRGWWVNLFAAFLGFFRAIPIIMLIFW 80
Cdd:COG0765    3 FDFSVLLDYLPLLL---------EGLLVTLLLTVLAIVLGLVLGLLLALARLSPNPVLRWLATAYVEFFRGTPLLVQLFF 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217  81 VYFLLPiAFGVDVPEITTVVCALALVTSAYIAHGVKAGILAIGKGQWQAGMSLGFSRWEVLWHIVLPQALRMMIPSFINQ 160
Cdd:COG0765   74 IYFGLP-LLGIDLSPFVAAVIALTLNSAAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIILPQALRIILPPLGNE 152

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 490358217 161 WIALIKDTSLAYIVGVGELSFLASQVNNRSMvYPTEIFLFVAFIYFVMCSGLELGANALMRRYSLQR 227
Cdd:COG0765  153 FISLLKDTSLVSVIGVPELTRAAQQIASRTF-RPFEVYLVAALIYLVLTLPLSLLARRLERRLARGR 218
 
Name Accession Description Interval E-value
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 1-227 7.46e-71

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 216.48  E-value: 7.46e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217   1 MDFSVIRDNWEYLLfgtfpdgplEGAALTLVISLIAGAISVVLGTIGGVMLAMLRGWWVNLFAAFLGFFRAIPIIMLIFW 80
Cdd:COG0765    3 FDFSVLLDYLPLLL---------EGLLVTLLLTVLAIVLGLVLGLLLALARLSPNPVLRWLATAYVEFFRGTPLLVQLFF 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217  81 VYFLLPiAFGVDVPEITTVVCALALVTSAYIAHGVKAGILAIGKGQWQAGMSLGFSRWEVLWHIVLPQALRMMIPSFINQ 160
Cdd:COG0765   74 IYFGLP-LLGIDLSPFVAAVIALTLNSAAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIILPQALRIILPPLGNE 152

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 490358217 161 WIALIKDTSLAYIVGVGELSFLASQVNNRSMvYPTEIFLFVAFIYFVMCSGLELGANALMRRYSLQR 227
Cdd:COG0765  153 FISLLKDTSLVSVIGVPELTRAAQQIASRTF-RPFEVYLVAALIYLVLTLPLSLLARRLERRLARGR 218
glnP PRK09494
glutamine ABC transporter permease protein; Reviewed
 23-222 5.15e-35

glutamine ABC transporter permease protein; Reviewed


Pssm-ID: 181907 [Multi-domain]  Cd Length: 219  Bit Score: 124.78  E-value: 5.15e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217  23 LEGAALTLVISLIAGAISVVLGTIGGVMLAmLRGWWVNLFA-AFLGFFRAIPIIMLIFWVYFLLPIAF-GVDVPEITTVV 100
Cdd:PRK09494  16 LEGAKMTLWISVLGLAGGLVIGLLAGFARA-YGGWIANHIAlVFIELIRGTPIVVQVMFIYFALPMAFnDLRIDPFTAAV 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217 101 CALALVTSAYIAHGVKAGILAIGKGQWQAGMSLGFSRWEVLWHIVLPQALRMMIPSFINQWIALIKDTSLAYIVGVGELS 180
Cdd:PRK09494  95 VTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSRRETLRYVIGPLALRRMLPPLGNQWIISIKDTSLFIVIGVAELT 174

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 490358217 181 FLASQV---NNRSMvyptEIFLFVAFIYFVMCSGLELGANALMRR 222
Cdd:PRK09494 175 RQGQEIiagNFRAL----EIWSAVAVIYLIITLVLSFILRRLERR 215
ectoine_ehuC TIGR03004
ectoine/hydroxyectoine ABC transporter, permease protein EhuC; Members of this family are ...
 23-224 3.33e-27

ectoine/hydroxyectoine ABC transporter, permease protein EhuC; Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons. Permease subunits EhuC and EhuD are homologous.


Pssm-ID: 132049 [Multi-domain]  Cd Length: 214  Bit Score: 104.16  E-value: 3.33e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217   23 LEGAALTLVISLIAGAISVVLGTIGGvMLAMLRGWWVNLFA-AFLGFFRAIPIIMLIFWVYFLLPIaFGVDVPEITTVVC 101
Cdd:TIGR03004   8 LQGAWVTMQITLAGSVLATVLAFFAG-LGRVSGGPILRTVAlCYIEVFRGTSLLVQLFWFYFVLPL-IGLSLDPVTTGVM 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217  102 ALALVTSAYIAHGVKAGILAIGKGQWQAGMSLGFSRWEVLWHIVLPQALRMMIPSFINQWIALIKDTSLAYIVGVGELSF 181
Cdd:TIGR03004  86 VLGLHAGAYGAEIVRGALSSVSVQQLEACRALNFTRFQTLRRISLPQALVEMMPAFGNLAIELLKLTSLVSLISLADLTF 165

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 490358217  182 LASQVNNRSMvYPTEIFLFVAFIYFVMCSGLELGANALMRRYS 224
Cdd:TIGR03004 166 AAQSIRNLTL-DTLSIFAITLLCYFVMALIIMLIMRVLERVVR 207
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 26-209 9.61e-20

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 83.87  E-value: 9.61e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217  26 AALTLVISLIAGAISVVLGTIGGVMLAMLRGWWVNLFAAFLGFFRAIPIIMLIFWVYFLLPIAFGVDVPE--ITTVVCAL 103
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPglGLPALILA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217 104 ALVTSAYIAHGVKAGILAIGKGQWQAGMSLGFSRWEVLWHIVLPQALRMMIPSFINQWIALIKDTSLAYIVGVGE---LS 180
Cdd:cd06261   81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEapgPG 160

                        170       180
                 ....*....|....*....|....*....
gi 490358217 181 FLASQVNNRSMVYPTEIFLFVAFIYFVMC 209
Cdd:cd06261  161 TGLLLIFAILFPGDLGVAAAVALILLLLS 189
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 44-212 1.02e-11

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 61.93  E-value: 1.02e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217   44 GTIGGVMLAMLRGWWV-NLFAAFLGFFRAIP---IIMLIFWVYFLLPIAFGvdvpeITTVVCALALVTSAYIAHGVKAGI 119
Cdd:pfam00528   1 GIPLGIIAALRRGRRLdRLLRPLIDLLQALPsfvLAILLVVIAILSILGHG-----ILPAIILALLGWAGYARLIRRAAL 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217  120 LAIGKGQWQAGMSLGFSRWEVLWHIVLPQALRMMIPSFINQWIALIKDTSLAYIVGVGELSFLASQVNNRSMVYPTEIFL 199
Cdd:pfam00528  76 RSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQGP 155

                         170
                  ....*....|...
gi 490358217  200 FVAFIYFVMCSGL 212
Cdd:pfam00528 156 VLAAALILLLLNL 168
 
Name Accession Description Interval E-value
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 1-227 7.46e-71

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 216.48  E-value: 7.46e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217   1 MDFSVIRDNWEYLLfgtfpdgplEGAALTLVISLIAGAISVVLGTIGGVMLAMLRGWWVNLFAAFLGFFRAIPIIMLIFW 80
Cdd:COG0765    3 FDFSVLLDYLPLLL---------EGLLVTLLLTVLAIVLGLVLGLLLALARLSPNPVLRWLATAYVEFFRGTPLLVQLFF 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217  81 VYFLLPiAFGVDVPEITTVVCALALVTSAYIAHGVKAGILAIGKGQWQAGMSLGFSRWEVLWHIVLPQALRMMIPSFINQ 160
Cdd:COG0765   74 IYFGLP-LLGIDLSPFVAAVIALTLNSAAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIILPQALRIILPPLGNE 152

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 490358217 161 WIALIKDTSLAYIVGVGELSFLASQVNNRSMvYPTEIFLFVAFIYFVMCSGLELGANALMRRYSLQR 227
Cdd:COG0765  153 FISLLKDTSLVSVIGVPELTRAAQQIASRTF-RPFEVYLVAALIYLVLTLPLSLLARRLERRLARGR 218
glnP PRK09494
glutamine ABC transporter permease protein; Reviewed
 23-222 5.15e-35

glutamine ABC transporter permease protein; Reviewed


Pssm-ID: 181907 [Multi-domain]  Cd Length: 219  Bit Score: 124.78  E-value: 5.15e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217  23 LEGAALTLVISLIAGAISVVLGTIGGVMLAmLRGWWVNLFA-AFLGFFRAIPIIMLIFWVYFLLPIAF-GVDVPEITTVV 100
Cdd:PRK09494  16 LEGAKMTLWISVLGLAGGLVIGLLAGFARA-YGGWIANHIAlVFIELIRGTPIVVQVMFIYFALPMAFnDLRIDPFTAAV 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217 101 CALALVTSAYIAHGVKAGILAIGKGQWQAGMSLGFSRWEVLWHIVLPQALRMMIPSFINQWIALIKDTSLAYIVGVGELS 180
Cdd:PRK09494  95 VTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSRRETLRYVIGPLALRRMLPPLGNQWIISIKDTSLFIVIGVAELT 174

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 490358217 181 FLASQV---NNRSMvyptEIFLFVAFIYFVMCSGLELGANALMRR 222
Cdd:PRK09494 175 RQGQEIiagNFRAL----EIWSAVAVIYLIITLVLSFILRRLERR 215
PRK15100 PRK15100
cystine ABC transporter permease;
23-228 1.98e-34

cystine ABC transporter permease;


Pssm-ID: 185055 [Multi-domain]  Cd Length: 220  Bit Score: 123.32  E-value: 1.98e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217  23 LEGAALTLVISLIAGAISVVLGtIGGVMLAMLRGWWVNLFAAF-LGFFRAIPIIMLIFWVYFLLPiAFGVDVPEITTVVC 101
Cdd:PRK15100  16 LKGAGYTLQLSIGGMFFGLLLG-FILALMRLSPIWPVRWLARFyVSIFRGTPLIAQLFMIYYGLP-QFGIELDPIPAAMI 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217 102 ALALVTSAYIAHGVKAGILAIGKGQWQAGMSLGFSRWEVLWHIVLPQALRMMIPSFINQWIALIKDTSLAYIVGVGELSF 181
Cdd:PRK15100  94 GLSLNTAAYAAETLRAAISSIDKGQWEAAASIGMTRWQTLRRAILPQAARTALPPLSNSFISLVKDTSLAATIQVPELFR 173

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 490358217 182 LASQVNNRSMvyptEIF---LFVAFIYFVMCSGLELGANALMRRYSLQRQ 228
Cdd:PRK15100 174 QAQLITSRTL----EVFtmyLAASLIYWIMATVLSALQNRFENQLNRQER 219
ArtM COG4160
ABC-type arginine/histidine transport system, permease component [Amino acid transport and ...
 1-231 1.32e-29

ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 443325 [Multi-domain]  Cd Length: 229  Bit Score: 110.95  E-value: 1.32e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217   1 MDFSVIRDNWEYLLfgtfpdgplEGAALTLVISLIAGAISVVLGTIGGVMLAMlRGWWVNLFA-AFLGFFRAIPIIMLIF 79
Cdd:COG4160    1 MDLDLLFEYLPLLL---------SGLPLTLQLLALSLLLGFLLAVPLALARAS-GNRLLRWPArGYIYVFRGTPLLVQLF 70

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217  80 WVYFLLPIAFGVDVPEITTV--------VCALALVTSAYIAHGVKAGILAIGKGQWQAGMSLGFSRWEVLWHIVLPQALR 151
Cdd:COG4160   71 LIYYGLGQFEWVRESWLWPLlrdpwfcaLLALTLNTAAYTAEIFRGAIRAVPKGEIEAARALGMSRWQTFRRIILPSALR 150

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217 152 MMIPSFINQWIALIKDTSLAYIVGVGELSFLASQVNNRSmvY-PTEIFLFVAFIYFVMCSGLELGANALMRRYSLQRQPR 230
Cdd:COG4160  151 RALPAYSNEVILMLKATALASTITVMDLTGVARRIYSRT--YdPFEPFLIAALIYLVITFLLTRLFRLLERRLLRHLRPR 228


                 .
gi 490358217 231 Q 231
Cdd:COG4160  229 R 229
ectoine_ehuC TIGR03004
ectoine/hydroxyectoine ABC transporter, permease protein EhuC; Members of this family are ...
 23-224 3.33e-27

ectoine/hydroxyectoine ABC transporter, permease protein EhuC; Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons. Permease subunits EhuC and EhuD are homologous.


Pssm-ID: 132049 [Multi-domain]  Cd Length: 214  Bit Score: 104.16  E-value: 3.33e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217   23 LEGAALTLVISLIAGAISVVLGTIGGvMLAMLRGWWVNLFA-AFLGFFRAIPIIMLIFWVYFLLPIaFGVDVPEITTVVC 101
Cdd:TIGR03004   8 LQGAWVTMQITLAGSVLATVLAFFAG-LGRVSGGPILRTVAlCYIEVFRGTSLLVQLFWFYFVLPL-IGLSLDPVTTGVM 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217  102 ALALVTSAYIAHGVKAGILAIGKGQWQAGMSLGFSRWEVLWHIVLPQALRMMIPSFINQWIALIKDTSLAYIVGVGELSF 181
Cdd:TIGR03004  86 VLGLHAGAYGAEIVRGALSSVSVQQLEACRALNFTRFQTLRRISLPQALVEMMPAFGNLAIELLKLTSLVSLISLADLTF 165

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 490358217  182 LASQVNNRSMvYPTEIFLFVAFIYFVMCSGLELGANALMRRYS 224
Cdd:TIGR03004 166 AAQSIRNLTL-DTLSIFAITLLCYFVMALIIMLIMRVLERVVR 207
BatB COG4597
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 17-175 7.30e-25

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 443651 [Multi-domain]  Cd Length: 397  Bit Score: 101.38  E-value: 7.30e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217  17 TFPDGPLEGAALTLVISLIAGAISVVLGTIGGVMLAMLRGWWVNLFAAFLGFFRAIPIImlifwVYFLLPIAFGVDVP-- 94
Cdd:COG4597  176 YLPAPVFEPGFGWVLAALLAAIVAAFVLRRWARRRQEATGQRFPVWWISLALLVGLPLL-----AFLLLGAPLSLDYPel 250

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217  95 -------------EITTVVCALALVTSAYIAHGVKAGILAIGKGQWQAGMSLGFSRWEVLWHIVLPQALRMMIPSFINQW 161
Cdd:COG4597  251 kgfnfrggltlspEFVALLLALSLYTAAFIAEIVRAGIQAVSKGQTEAARALGLRPGQTLRLVVLPQALRVIIPPLTSQY 330

                        170
                 ....*....|....
gi 490358217 162 IALIKDTSLAYIVG 175
Cdd:COG4597  331 LNLTKNSSLAVAIG 344
PRK15107 PRK15107
glutamate/aspartate ABC transporter permease GltK;
23-222 1.39e-24

glutamate/aspartate ABC transporter permease GltK;


Pssm-ID: 185062 [Multi-domain]  Cd Length: 224  Bit Score: 97.59  E-value: 1.39e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217  23 LEGAALTLVISLIAgaisVVLGTIGGVMLAMLR-------GWWVnlfAAFLGFFRAIPIIMLIFWVYFLLP--------I 87
Cdd:PRK15107  17 LDGLVITLKITVTA----VVIGILWGTILAVMRlssfkpvAWFA---KAYVNVFRSIPLVMVLLWFYLIVPgflqnvlgL 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217  88 AFGVDVPEITTVVcALALVTSAYIAHGVKAGILAIGKGQWQAGMSLGFSRWEVLWHIVLPQALRMMIPSFINQWIALIKD 167
Cdd:PRK15107  90 SPKTDIRLISAMV-AFSMFEAAYYSEIIRAGIQSISRGQSSAALALGMTHWQSMKLIILPQAFRAMVPLLLTQGIVLFQD 168

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 490358217 168 TSLAYIVGVGELSFLASQVNNRSMVyPTEIFLFVAFIYFVMCSGLELGANALMRR 222
Cdd:PRK15107 169 TSLVYVLSLADFFRTASTIGERDGT-QVEMILFAGFVYFVISLSASLLVSYLKKR 222
ectoine_ehuD TIGR03003
ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Members of this family are ...
 23-223 6.20e-22

ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons.


Pssm-ID: 132048 [Multi-domain]  Cd Length: 212  Bit Score: 90.30  E-value: 6.20e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217   23 LEGAALTLVISLIAGAISVVLGTIGGVMLAMLRGWWVNLFAAFLGFFRAIPIIMLIFWVYFLLPiAFGVDVPEITTVVCA 102
Cdd:TIGR03003  14 IEGLKITILATALGFAIAAVLGLVFAILRRSAPTPISWPTSFVVEFIRGTPLLVQLYFLYYVLP-DIGIRLPALVAGVLG 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217  103 LALVTSAYIAHGVKAGILAIGKGQWQAGMSLGFSRWEVLWHIVLPQALRMMIPSFINQWIALIKDTSLAYIVGVGELSFL 182
Cdd:TIGR03003  93 LGLHYATYAAEVYRAGIEAVPRGQWEAATALNLTARQTYRHIILPQAIPPIIPALGNYLVAMFKETPVLSAITVLELMNQ 172

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 490358217  183 ASQVNNRSMVYPTEIFLfVAFIYFVMCSGLELGANALMRRY 223
Cdd:TIGR03003 173 AKSIGNSTFRYLEPMTL-VGVFFLILSIISVFFLRRLEARL 212
PRK11123 PRK11123
arginine ABC transporter permease ArtQ;
26-207 1.13e-20

arginine ABC transporter permease ArtQ;


Pssm-ID: 182979 [Multi-domain]  Cd Length: 238  Bit Score: 87.43  E-value: 1.13e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217  26 AALTLVISLIAGAISVVLGTIGGVMLAMLRGWWVNLFaaflgffRAIPIIMLIFWVYF--------------------LL 85
Cdd:PRK11123  18 AVCALIVGLALAMLFAVWESAKWRPVAWPGTALVTLL-------RGLPEILVVLFIYFgssqllltlsdgftlnlgfvQI 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217  86 PIAFGVDVPEITTVVC---ALALVTSAYIAHGVKAGILAIGKGQWQAGMSLGFSRWEVLWHIVLPQALRMMIPSFINQWI 162
Cdd:PRK11123  91 PVQMDIENFEVSPFLCgviALSLLYAAYASQTLRGALKAVPVGQWESGQALGLSKSAIFFRLVMPQMWRHALPGLGNQWL 170

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 490358217 163 ALIKDTSLAYIVGVGELSFLASQVNNRSMvYPTEIFLFVAFIYFV 207
Cdd:PRK11123 171 VLLKDTALVSLISVNDLMLQTKSIATRTQ-EPFTWYIIAAAIYLV 214
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 26-209 9.61e-20

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 83.87  E-value: 9.61e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217  26 AALTLVISLIAGAISVVLGTIGGVMLAMLRGWWVNLFAAFLGFFRAIPIIMLIFWVYFLLPIAFGVDVPE--ITTVVCAL 103
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPglGLPALILA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217 104 ALVTSAYIAHGVKAGILAIGKGQWQAGMSLGFSRWEVLWHIVLPQALRMMIPSFINQWIALIKDTSLAYIVGVGE---LS 180
Cdd:cd06261   81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEapgPG 160

                        170       180
                 ....*....|....*....|....*....
gi 490358217 181 FLASQVNNRSMVYPTEIFLFVAFIYFVMC 209
Cdd:cd06261  161 TGLLLIFAILFPGDLGVAAAVALILLLLS 189
artM PRK11122
arginine ABC transporter permease ArtM;
23-222 8.68e-15

arginine ABC transporter permease ArtM;


Pssm-ID: 182978 [Multi-domain]  Cd Length: 222  Bit Score: 71.14  E-value: 8.68e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217  23 LEGAALTLVISLIAGAISVVLGTIGGVMLAMLRGWWVNLFAAFLGFFRAIPIIMLIFWVYFLlPIAFG--VDVPEITTV- 99
Cdd:PRK11122   9 LKGLHTSLTLTVASLLVALVLALIFTIILTLKTPVLVWLVRGYITLFTGTPLLVQIFLIYYG-PGQFPwlQEYPWLWHLl 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217 100 -------VCALALVTSAYIAHGVKAGILAIGKGQWQAGMSLGFSRWEVLWhIVLPQALRMMIPSFINQWIALIKDTSLAY 172
Cdd:PRK11122  88 sqpwlcaMLALALNSAAYSTQLFYGAVRAIPEGQWQSCAALGMSKKQTLR-ILLPYAFKRALSSYSNEVVLVFKSTSLAY 166

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 490358217 173 IVGVGELSFLASQVNNRSmvYPTEIFLFVAFIYFVMCSGLELganaLMRR 222
Cdd:PRK11122 167 TITLMDVMGYSQLLYGRT--YDVMVFGAAGIIYLVVNGLLTL----LMRL 210
HEQRo_perm_3TM TIGR01726
amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; This ...
 23-112 6.96e-13

amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; This model represents one of several classes of multiple membrane spanning regions found immediately N-terminal to the domain described by pfam00528, binding-protein-dependent transport systems inner membrane component. The region covered by this model generally is predicted to contain three transmembrane helices. Substrate specificities attributed to members of this family include histidine, arginine, glutamine, glutamate, and (in Agrobacterium) the opines octopine and nopaline. [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 130787 [Multi-domain]  Cd Length: 99  Bit Score: 62.94  E-value: 6.96e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217   23 LEGAALTLVISLIAGAISVVLGTIGGVMlAMLRGWWVNLFA-AFLGFFRAIPIIMLIFWVYFLLPiAFGVDVPEITTVVC 101
Cdd:TIGR01726   6 LKGLLLTLLLSVLSILLGLVLGLLLALL-RLSGNRPLRWIAtVYVELFRGTPLLVQLFFIYFGLP-LIGIRLSPLTAAVI 83

                          90
                  ....*....|.
gi 490358217  102 ALALVTSAYIA 112
Cdd:TIGR01726  84 ALTLFYGAYLA 94
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 44-212 1.02e-11

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 61.93  E-value: 1.02e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217   44 GTIGGVMLAMLRGWWV-NLFAAFLGFFRAIP---IIMLIFWVYFLLPIAFGvdvpeITTVVCALALVTSAYIAHGVKAGI 119
Cdd:pfam00528   1 GIPLGIIAALRRGRRLdRLLRPLIDLLQALPsfvLAILLVVIAILSILGHG-----ILPAIILALLGWAGYARLIRRAAL 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217  120 LAIGKGQWQAGMSLGFSRWEVLWHIVLPQALRMMIPSFINQWIALIKDTSLAYIVGVGELSFLASQVNNRSMVYPTEIFL 199
Cdd:pfam00528  76 RSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQGP 155

                         170
                  ....*....|...
gi 490358217  200 FVAFIYFVMCSGL 212
Cdd:pfam00528 156 VLAAALILLLLNL 168
PRK15135 PRK15135
histidine ABC transporter permease HisQ;
23-225 1.91e-10

histidine ABC transporter permease HisQ;


Pssm-ID: 185089 [Multi-domain]  Cd Length: 228  Bit Score: 59.04  E-value: 1.91e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217  23 LEGAALTLVISLIAGAISVVLGTIGGVMLAMLRGWWVNLFAAFLGFFRAIPIIMLIFWVYFLLPIAFG----------VD 92
Cdd:PRK15135  10 LQGALVTLELALSSVVLAVIIGLIGAGGKLSQNRLLGLIFEGYTTLIRGVPDLVLMLLIFYGLQIALNsvtealgvgqID 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217  93 VPEITTVVCALALVTSAYIAHGVKAGILAIGKGQWQAGMSLGFSRWEVLWHIVLPQALRMMIPSFINQWIALIKDTSLAY 172
Cdd:PRK15135  90 IDPMVAGIITLGFIYGAYFTETFRGAFMAVPKGHIEAATAFGFTRGQVFRRIMFPAMMRYALPGIGNNWQVILKATALVS 169

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 490358217 173 IVGVGELsFLASQVNNRSMVYPTEIFLFVAFIYFVMCSGLELGANALMRRYSL 225
Cdd:PRK15135 170 LLGLEDV-VKATQLAGKSTWEPFYFAIVCGVIYLVFTTVSNGVLLWLERRYSV 221
PRK15069 PRK15069
histidine ABC transporter permease HisM;
5-237 4.92e-09

histidine ABC transporter permease HisM;


Pssm-ID: 185029 [Multi-domain]  Cd Length: 234  Bit Score: 55.06  E-value: 4.92e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217   5 VIRDNWEYLLFGtfpDG-PLEGAALTLVIsLIAgaiSVVLGTIGGVMLAMLR---GWWVNLFAAFLGF-FRAIP--IIML 77
Cdd:PRK15069   4 ILQEYWKALLWT---DGyRFTGLAITLWL-LVA---SVVIGFVLAVPLAIARvssNKWIRFPVWLYTYvFRGTPlyVQLL 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217  78 IFWV-YFLLPIAFGVDVPE------ITTVVCALALVTSAYIAHGVKAGILAIGKGQWQAGMSLGFSRWEVLWHIVLPQAL 150
Cdd:PRK15069  77 VFYTgMYSLEIVRGTDLLDaffrsgLNCTILAFTLNTCAYTTEIFAGAIRSVPHGEIEAARAYGMSTFKLYRRIILPSAL 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217 151 RMMIPSFINQWIALIKDTSLAYIVGVGELSFLASQVNnrSMVY-PTEIFLFVAFIYFVMCSGLelganalmrrYSLQRQP 229
Cdd:PRK15069 157 RRALPAYSNEVILMLHATTLAFTATVPDILKIARDIN--SATYqPFQAFGIAAVLYLIISFVL----------ISLFRRA 224


                 ....*...
gi 490358217 230 RQSWLARL 237
Cdd:PRK15069 225 ERRWLAHL 232
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 23-222 6.38e-09

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 55.12  E-value: 6.38e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217  23 LEGAALTLVISLIAGAISVVLGTIGGVMLAMLRGWWVNLFAAFLGFFRAIPII-----MLIFWVyfLLPIAFGvdvpeIT 97
Cdd:COG1177   60 LDALLNSLLIALLSTLLATVLGTPAALALARYRFRGRRLLLALLLLPLVVPGIvlgvaLLLLFS--ALGLSGG-----LW 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217  98 TVVCALALVTSAYIAHGVKAGILAIGKGQWQAGMSLGFSRWEVLWHIVLPQALRMMIPSFINQWIALIKDTSLAYIVGVG 177
Cdd:COG1177  133 GLILAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGP 212

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 490358217 178 ELSFLASQVNNRSMVYPTEIFLFVAFIYFVMCSGLELGANALMRR 222
Cdd:COG1177  213 GVTTLPVYIYSMIRRGISPEINALSTLLILLSLLLLLLAERLRRR 257
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
10-222 8.01e-09

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 55.55  E-value: 8.01e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217  10 WEYLLFGTFPDGPLEGAALTLVISLIAGAISVVLGTIGGVMLAMLRGWWVNLFAAFLGFFRAIPII-----MLIFWVYFL 84
Cdd:COG1178  324 LDNYRFVLLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRRRGRLARLLDRLAMLPYAVPGIvlglgLLLLFNRPL 403

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217  85 LPIAFGVdvpeITTVVCALALVTSAYIAHGVKAGILAIGKGQWQAGMSLGFSRWEVLWHIVLPQALRMMIPSFINQWIAL 164
Cdd:COG1178  404 PLLLYGT----LAILVLAYVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTS 479

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 490358217 165 IKDTSLAYIVGVGELSFLASQVNNRSMVYPTEIFLFVAFIYFVMCSGLELGANALMRR 222
Cdd:COG1178  480 MKELSATLLLRPPGFETLAVLIYQLASSGRYGEAAALALLLVLVSLLPVLLLERLLGR 537
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
29-158 2.28e-08

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 54.40  E-value: 2.28e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217  29 TLVISLIAGAISVVLGTIGGVMLAMLRGWWVNLFAAFLGFFRAIPIIMLIF----------WVYFLLPIAFGVDVPEITT 98
Cdd:COG1178   59 TLLLALLVTLLSLLLGVPLAWLLARTDFPGRRLLRWLLLLPLALPPYVVALawialfgpngLLNTLLRALFGLEPPDIYG 138

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 490358217  99 ---VVCALALVTSAYIAHGVKAGILAIGKGQWQAGMSLGFSRWEVLWHIVLPQALRMMIPSFI 158
Cdd:COG1178  139 lggIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGAL 201
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 10-150 1.84e-07

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 50.53  E-value: 1.84e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217  10 WEYLLFGTFpdgpLEGAALTLVISLIAGAISVVLGTIGGVMLAMLRgWWVNLFAAFLGFFRAIPIIMLIFwvyfLLPIAF 89
Cdd:COG0600   51 VELLASGEL----WEHLLASLLRVLLGFALAALLGVPLGLLLGLSR-LLRRLLDPLLVFLRPIPPLALAP----LLILWF 121

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490358217  90 GVDVPEITTVVcalALVTSAYIAHGVKAGILAIGKGQWQAGMSLGFSRWEVLWHIVLPQAL 150
Cdd:COG0600  122 GIGEASKIFVI---FLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAAL 179
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 28-199 1.61e-06

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 47.82  E-value: 1.61e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217  28 LTLVISLIAGAISVVLGTIGGVMLAMLRGWWVNLFAAFLGFFRAIP-----IIMLIF-----WVYFLLPiAFGVDVP-EI 96
Cdd:COG0555   58 LSLGTALIAALINLVFGLPLAWVLVRYRFPGKRLVDALVDLPFALPtavagIALLLLfgpngWLGQLLA-PLGIKVAfTP 136

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217  97 TTVVCALALVTSAYIAHGVKAGILAIGKGQWQAGMSLGFSRWEVLWHIVLPQALRmmipsfinqwiALIKDTSLAYIVGV 176
Cdd:COG0555  137 LGIVLAQTFVSLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLP-----------ALLTGFALAFARAL 205

                        170       180
                 ....*....|....*....|....*.
gi 490358217 177 GE---LSFLASQVNNRSMVYPTEIFL 199
Cdd:COG0555  206 GEfgaVIFIAGNLPMKTEILPLLIYL 231
PRK10782 PRK10782
D-methionine ABC transporter permease MetI;
29-211 3.20e-06

D-methionine ABC transporter permease MetI;


Pssm-ID: 182726  Cd Length: 217  Bit Score: 46.65  E-value: 3.20e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217  29 TLVISLIAGAISVVLGTIGGVMLAMLRGWWV-------NLFAAFLGFFRAIPIIMLIFWVYFLLPIAFGVDVpEITTVVC 101
Cdd:PRK10782  16 TLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIianaklyRTLSALVNIFRSIPFIILLVWMIPFTRVIVGTSI-GLQAAIV 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217 102 ALALVTSAYIAHGVKAGILAIGKGQWQAGMSLGFSRWEVLWHIVLPQALRMMIPSFINQWIALIKDTSLAYIVGVGELSF 181
Cdd:PRK10782  95 PLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQ 174

                        170       180       190
                 ....*....|....*....|....*....|...
gi 490358217 182 LASQ---VNNRSMVYPTEIFLFVAFIYFVMCSG 211
Cdd:PRK10782 175 IGYQygyIGYNATVMNTVLVLLVILVYLIQFAG 207
PhnE COG3639
ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport ...
 23-162 8.72e-05

ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 442856 [Multi-domain]  Cd Length: 244  Bit Score: 42.76  E-value: 8.72e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217  23 LEGAALTLVISLIAGAISVVLGTIGGVMLA--MLRGWWVNLFA-AFLGFFRAIP-IIMLIFWVyfllpIAFGvdvPEITT 98
Cdd:COG3639   50 LSALLETLAIALLGTLLGAVLALPLAFLAArnLAPNPWVRLLArRLLNVLRAIPeLVWALIFV-----AAVG---LGPFA 121

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 490358217  99 VVCALALVTSAYIAHGVKAGILAIGKGQWQAGMSLGFSRWEVLWHIVLPQALrmmiPSFINQWI 162
Cdd:COG3639  122 GVLALAIHTIGFLGKLFAEAIEEIDPGPVEALRATGASRLQVIRYGVLPQVL----PQFLSYTL 181
PstA COG0581
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 9-151 3.20e-04

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440346 [Multi-domain]  Cd Length: 259  Bit Score: 41.17  E-value: 3.20e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217   9 NWEyLLFGTFPDGPLEGAAL-----TLVISLIAGAISVVLGTIGGVMLAML--RGWWVNLFAAFLGFFRAIP-IIMLIFw 80
Cdd:COG0581   22 SWE-FLTSSPSPGPEGGGILpaivgTLLLVLLATLIAVPLGVLAAIYLAEYarGGRLARLIRFAIDVLAGVPsIVYGLF- 99

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490358217  81 VYFLLPIAFGVDvPEITTVVCALALVTSAYIAHGVKAGILAIGKGQWQAGMSLGFSRWEVLWHIVLPQALR 151
Cdd:COG0581  100 GYALFVLTLGLG-FSLLAGALALALLMLPVVIRTTEEALRLVPNSLREASYALGATKWQTIRKVVLPAALP 169
DppB COG0601
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 29-150 4.34e-03

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440366 [Multi-domain]  Cd Length: 314  Bit Score: 37.74  E-value: 4.34e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217  29 TLVISLIAGAISVVLGTIGGVMLAMLRG-WWVNLFAAFLGFFRAIPI----IMLIFWVYF---LLPIAFGVDVPEITTV- 99
Cdd:COG0601   98 TLELALLALLLALLIGIPLGILAALRRGsWLDRLITVLALLGISIPSfwlgLLLILLFAVklgWLPVSGRVSPWEDFLDa 177

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 490358217 100 -------VCALALVTSAYIAHGVKAGILAIGKGQW-QAGMSLGFSRWEVLWHIVLPQAL 150
Cdd:COG0601  178 lrhlilpALTLALGSLAGIARLTRSSMLEVLGQDYvRTARAKGLSERRVLLRHALRNAL 236
PstC COG0573
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 29-158 9.02e-03

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440338 [Multi-domain]  Cd Length: 303  Bit Score: 36.61  E-value: 9.02e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490358217  29 TLVISLIAGAISVVLGTIGGVMLA-MLRGWWVNLFAAFLGFFRAIPIIMLIFWVYFLLPIAFGVDVPEITTVVCALA--- 104
Cdd:COG0573   82 TLLVSLIALLIAVPLGLGIAIFLSeYAPPRLRRILKPAIELLAGIPSVVYGFWGLFVLVPLLRDLFPWPPSGFSLLTagi 161

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490358217 105 --------LVTSayIAHGVkagILAIGKGQWQAGMSLGFSRWEVLWHIVLPQALRMMIPSFI 158
Cdd:COG0573  162 vlaimilpTITS--LSRDA---LRAVPRSLREAALALGATRWETIRKVVLPAARSGIIAAVI 218
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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