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Conserved domains on  [gi|490360254|ref|WP_004240017|]
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MULTISPECIES: flagellar motor stator protein MotA [Morganella]

Protein Classification

flagellar motor stator protein MotA( domain architecture ID 10013143)

motility protein A (MotA) is a flagellar motor stator protein which is energized by a proton (H(+)) motive force

Gene Symbol:  motA
Gene Ontology:  GO:0120101|GO:1902600|GO:0006935
PubMed:  6090403|32931735

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK09110 PRK09110
flagellar motor stator protein MotA;
1-283 2.20e-162

flagellar motor stator protein MotA;


:

Pssm-ID: 181655 [Multi-domain]  Cd Length: 283  Bit Score: 452.70  E-value: 2.20e-162
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490360254   1 MLILIGYIIVTGTVIGGYLMVGGHMGALYQPAEFVIILGAGFGAFVVGNSGKSIVALGKVLPRLFRRSSYNKAMSMDLMA 80
Cdd:PRK09110   1 MLIIIGYIVVLGSVFGGYLLAGGHLGALIQPAELLIIGGAALGAFIVGNPGKAIKATLKALPKLFKGPKYKKADYMDLLA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490360254  81 LLFQLLNKSRQQGLLALEKDIENPQESDIFSQYPRILKDPAALMFLVDYLRLMITSNLQSHEIEALMDEELETFRQESEV 160
Cdd:PRK09110  81 LLYELLRKARQEGMMALEAHIENPEESPIFAKYPKILKDHHLVDFICDYLRLMISGNMNPHEIEALMDEEIETHHHEAEV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490360254 161 PASGLNMVGDSMPAFGIVAAVLGVVNALGSADRPAGELGALIAHAMVGTFLGILVAYGFILPLASLIRLRSGEQLKMLEC 240
Cdd:PRK09110 161 PAHALQKVADALPAFGIVAAVLGVVKTMGSIDQPPAVLGALIGAALVGTFLGILLAYGFVGPLAARLEQVVEEDTKMYQC 240

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 490360254 241 IKVTFLSSLQGYPPQIAVEFGRKVLFSADRPSFTELEDKVREV 283
Cdd:PRK09110 241 IKVTLLASLNGYAPQIAVEFGRKTLPSTERPSFAELEEHVRGV 283
 
Name Accession Description Interval E-value
PRK09110 PRK09110
flagellar motor stator protein MotA;
1-283 2.20e-162

flagellar motor stator protein MotA;


Pssm-ID: 181655 [Multi-domain]  Cd Length: 283  Bit Score: 452.70  E-value: 2.20e-162
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490360254   1 MLILIGYIIVTGTVIGGYLMVGGHMGALYQPAEFVIILGAGFGAFVVGNSGKSIVALGKVLPRLFRRSSYNKAMSMDLMA 80
Cdd:PRK09110   1 MLIIIGYIVVLGSVFGGYLLAGGHLGALIQPAELLIIGGAALGAFIVGNPGKAIKATLKALPKLFKGPKYKKADYMDLLA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490360254  81 LLFQLLNKSRQQGLLALEKDIENPQESDIFSQYPRILKDPAALMFLVDYLRLMITSNLQSHEIEALMDEELETFRQESEV 160
Cdd:PRK09110  81 LLYELLRKARQEGMMALEAHIENPEESPIFAKYPKILKDHHLVDFICDYLRLMISGNMNPHEIEALMDEEIETHHHEAEV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490360254 161 PASGLNMVGDSMPAFGIVAAVLGVVNALGSADRPAGELGALIAHAMVGTFLGILVAYGFILPLASLIRLRSGEQLKMLEC 240
Cdd:PRK09110 161 PAHALQKVADALPAFGIVAAVLGVVKTMGSIDQPPAVLGALIGAALVGTFLGILLAYGFVGPLAARLEQVVEEDTKMYQC 240

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 490360254 241 IKVTFLSSLQGYPPQIAVEFGRKVLFSADRPSFTELEDKVREV 283
Cdd:PRK09110 241 IKVTLLASLNGYAPQIAVEFGRKTLPSTERPSFAELEEHVRGV 283
MotA1 TIGR03818
flagellar motor stator protein MotA; The MotA protein, along with its partner MotB, comprise ...
 1-282 1.80e-146

flagellar motor stator protein MotA; The MotA protein, along with its partner MotB, comprise the stator complex of the bacterial flagellar motor. MotAB span the cytoplasmic membrane and undergo conformational changes powered by the translocation of protons. These conformational changes in turn are communicated to the rotor assembly, producing torque. This model represents one family of MotA proteins which are often not identified by the "transporter, MotA/TolQ/ExbB proton channel family" model, pfam01618.


Pssm-ID: 274801 [Multi-domain]  Cd Length: 282  Bit Score: 412.29  E-value: 1.80e-146
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490360254    1 MLILIGYIIVTGTVIGGYLMVGGHMGALYQPAEFVIILGAGFGAFVVGNSGKSIVALGKVLPRLFRRSSYNKAMSMDLMA 80
Cdd:TIGR03818   1 MLKIIGLVVVLGSVFGGYALAGGHLAALWQPAELLIIGGAALGAFIIANPPKVLKETLKGLPAVFKGSKYGKADYLDLLS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490360254   81 LLFQLLNKSRQQGLLALEKDIENPQESDIFSQYPRILKDPAALMFLVDYLRLMITSNLQSHEIEALMDEELETFRQESEV 160
Cdd:TIGR03818  81 LLYELLRKARREGLMAIESHIENPEESSIFSKYPKILKDHHLVEFICDYLRLMVMGNMNPHELEALMEEEIETHHHELLK 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490360254  161 PASGLNMVGDSMPAFGIVAAVLGVVNALGSADRPAGELGALIAHAMVGTFLGILVAYGFILPLASLIRLRSGEQLKMLEC 240
Cdd:TIGR03818 161 PAHALQKVADALPGFGIVAAVLGVVITMGSIDGPPEVLGHHIAAALVGTFLGILLCYGFVGPLAAALEQRVEEEIKFLEC 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 490360254  241 IKVTFLSSLQGYPPQIAVEFGRKVLFSADRPSFTELEDKVRE 282
Cdd:TIGR03818 241 VKVVLVAFLNGYAPQLAVEFGRKVIPSDVRPSFAELEEWVRG 282
MotA COG1291
Flagellar motor component MotA [Cell motility];
1-275 5.78e-97

Flagellar motor component MotA [Cell motility];


Pssm-ID: 440902 [Multi-domain]  Cd Length: 258  Bit Score: 285.82  E-value: 5.78e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490360254   1 MLILIGYIIVTGTVIGGYLMVGGHMGALYQPAEFVIILGAGFGAFVVGNSGKSIVALGKVLPRLFRRSsynKAMSMDLMA 80
Cdd:COG1291    1 MATIIGLVVGLGAVLGGFLLEGGSLGALIQPPSLLIVFGGTLGAVLISFPLKVLKAALKALKKAFKGK---KADYEELIE 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490360254  81 LLFQLLNKSRQQGLLALEKDIENpqesdifsqypriLKDPaalmFLVDYLRLMItSNLQSHEIEALMDEELETFRQESEV 160
Cdd:COG1291   78 LLVELAEKARKEGLLALESDIEE-------------IDDP----FLRDGLRLVV-DGTDPEEIRELLETEIEAMEERHEA 139

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490360254 161 PASGLNMVGDSMPAFGIVAAVLGVVNALGSADRPAgELGALIAHAMVGTFLGILVAYGFILPLASLIRLRSGEQLKMLEC 240
Cdd:COG1291  140 GAKVFEAMGDYAPAFGIIGTVLGLIQMLGNLDDPS-ALGPGIAVALVTTFYGVLLANLFFLPIANKLKRRSEEEVLLREM 218

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 490360254 241 IKVTFLSSLQGYPPQIAVEFGRKVLFSADRPSFTE 275
Cdd:COG1291  219 IIEGLLAIQAGENPRIIEEKLRSFLPPSERPSFEE 253
MotA_N pfam20560
Motility protein A N-terminal; This entry represents the N-terminal domain of Motility protein ...
 4-93 5.76e-37

Motility protein A N-terminal; This entry represents the N-terminal domain of Motility protein A (MotA). MotA is a membrane protein that forms the stator element of the flagellar motor complex together with MotB with 5:2 stoichiometry, which couples ion flow across the cytoplasmic membrane to generate torque, and thus, it is required for rotation of the flagellar motor. This domain contains conserved torque-generating charged residues at the C-terminal and is adjacent pfam01618, which represents MotA TMH3 and TMH4.


Pssm-ID: 466709 [Multi-domain]  Cd Length: 91  Bit Score: 126.74  E-value: 5.76e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490360254    4 LIGYIIVTGTVIGGYLMVGGHMGALYQ-PAEFVIILGAGFGAFVVGNSGKSIVALGKVLPRLFRRSSYNKAMSMDLMALL 82
Cdd:pfam20560   1 IIGIVVVLGCVFGGYALAGGHLGVLWQlPFELLIIGGAAIGAFIIANPMKVLKATLKALPKAFKGSKYKKADYLDLLALL 80

                          90
                  ....*....|.
gi 490360254   83 FQLLNKSRQQG 93
Cdd:pfam20560  81 YELLRKARKEG 91
T3SS_SctB_pilot NF038055
type III secretion system translocon subunit SctB; One SctB and four SctE subunits, located at ...
 75-112 3.29e-03

type III secretion system translocon subunit SctB; One SctB and four SctE subunits, located at the tip of the type III secretion system (T3SS) injectosome, combine to form the translocon (translocator pore) in the membrane of targeted cells. Species-specific names for this highly variable component of T3SS include YopD, EspB, IpaC, SipC, etc.


Pssm-ID: 411647 [Multi-domain]  Cd Length: 311  Bit Score: 38.56  E-value: 3.29e-03
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 490360254  75 SMDLMALLFQLLNKSRQQGLlaLEKDIENpqESDIFSQ 112
Cdd:NF038055  84 SLALMSLLYQVAKLSREQQL--QQRDIEV--KANISSQ 117
 
Name Accession Description Interval E-value
PRK09110 PRK09110
flagellar motor stator protein MotA;
1-283 2.20e-162

flagellar motor stator protein MotA;


Pssm-ID: 181655 [Multi-domain]  Cd Length: 283  Bit Score: 452.70  E-value: 2.20e-162
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490360254   1 MLILIGYIIVTGTVIGGYLMVGGHMGALYQPAEFVIILGAGFGAFVVGNSGKSIVALGKVLPRLFRRSSYNKAMSMDLMA 80
Cdd:PRK09110   1 MLIIIGYIVVLGSVFGGYLLAGGHLGALIQPAELLIIGGAALGAFIVGNPGKAIKATLKALPKLFKGPKYKKADYMDLLA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490360254  81 LLFQLLNKSRQQGLLALEKDIENPQESDIFSQYPRILKDPAALMFLVDYLRLMITSNLQSHEIEALMDEELETFRQESEV 160
Cdd:PRK09110  81 LLYELLRKARQEGMMALEAHIENPEESPIFAKYPKILKDHHLVDFICDYLRLMISGNMNPHEIEALMDEEIETHHHEAEV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490360254 161 PASGLNMVGDSMPAFGIVAAVLGVVNALGSADRPAGELGALIAHAMVGTFLGILVAYGFILPLASLIRLRSGEQLKMLEC 240
Cdd:PRK09110 161 PAHALQKVADALPAFGIVAAVLGVVKTMGSIDQPPAVLGALIGAALVGTFLGILLAYGFVGPLAARLEQVVEEDTKMYQC 240

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 490360254 241 IKVTFLSSLQGYPPQIAVEFGRKVLFSADRPSFTELEDKVREV 283
Cdd:PRK09110 241 IKVTLLASLNGYAPQIAVEFGRKTLPSTERPSFAELEEHVRGV 283
MotA1 TIGR03818
flagellar motor stator protein MotA; The MotA protein, along with its partner MotB, comprise ...
 1-282 1.80e-146

flagellar motor stator protein MotA; The MotA protein, along with its partner MotB, comprise the stator complex of the bacterial flagellar motor. MotAB span the cytoplasmic membrane and undergo conformational changes powered by the translocation of protons. These conformational changes in turn are communicated to the rotor assembly, producing torque. This model represents one family of MotA proteins which are often not identified by the "transporter, MotA/TolQ/ExbB proton channel family" model, pfam01618.


Pssm-ID: 274801 [Multi-domain]  Cd Length: 282  Bit Score: 412.29  E-value: 1.80e-146
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490360254    1 MLILIGYIIVTGTVIGGYLMVGGHMGALYQPAEFVIILGAGFGAFVVGNSGKSIVALGKVLPRLFRRSSYNKAMSMDLMA 80
Cdd:TIGR03818   1 MLKIIGLVVVLGSVFGGYALAGGHLAALWQPAELLIIGGAALGAFIIANPPKVLKETLKGLPAVFKGSKYGKADYLDLLS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490360254   81 LLFQLLNKSRQQGLLALEKDIENPQESDIFSQYPRILKDPAALMFLVDYLRLMITSNLQSHEIEALMDEELETFRQESEV 160
Cdd:TIGR03818  81 LLYELLRKARREGLMAIESHIENPEESSIFSKYPKILKDHHLVEFICDYLRLMVMGNMNPHELEALMEEEIETHHHELLK 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490360254  161 PASGLNMVGDSMPAFGIVAAVLGVVNALGSADRPAGELGALIAHAMVGTFLGILVAYGFILPLASLIRLRSGEQLKMLEC 240
Cdd:TIGR03818 161 PAHALQKVADALPGFGIVAAVLGVVITMGSIDGPPEVLGHHIAAALVGTFLGILLCYGFVGPLAAALEQRVEEEIKFLEC 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 490360254  241 IKVTFLSSLQGYPPQIAVEFGRKVLFSADRPSFTELEDKVRE 282
Cdd:TIGR03818 241 VKVVLVAFLNGYAPQLAVEFGRKVIPSDVRPSFAELEEWVRG 282
MotA COG1291
Flagellar motor component MotA [Cell motility];
1-275 5.78e-97

Flagellar motor component MotA [Cell motility];


Pssm-ID: 440902 [Multi-domain]  Cd Length: 258  Bit Score: 285.82  E-value: 5.78e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490360254   1 MLILIGYIIVTGTVIGGYLMVGGHMGALYQPAEFVIILGAGFGAFVVGNSGKSIVALGKVLPRLFRRSsynKAMSMDLMA 80
Cdd:COG1291    1 MATIIGLVVGLGAVLGGFLLEGGSLGALIQPPSLLIVFGGTLGAVLISFPLKVLKAALKALKKAFKGK---KADYEELIE 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490360254  81 LLFQLLNKSRQQGLLALEKDIENpqesdifsqypriLKDPaalmFLVDYLRLMItSNLQSHEIEALMDEELETFRQESEV 160
Cdd:COG1291   78 LLVELAEKARKEGLLALESDIEE-------------IDDP----FLRDGLRLVV-DGTDPEEIRELLETEIEAMEERHEA 139

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490360254 161 PASGLNMVGDSMPAFGIVAAVLGVVNALGSADRPAgELGALIAHAMVGTFLGILVAYGFILPLASLIRLRSGEQLKMLEC 240
Cdd:COG1291  140 GAKVFEAMGDYAPAFGIIGTVLGLIQMLGNLDDPS-ALGPGIAVALVTTFYGVLLANLFFLPIANKLKRRSEEEVLLREM 218

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 490360254 241 IKVTFLSSLQGYPPQIAVEFGRKVLFSADRPSFTE 275
Cdd:COG1291  219 IIEGLLAIQAGENPRIIEEKLRSFLPPSERPSFEE 253
PRK12482 PRK12482
flagellar motor stator protein MotA;
1-283 1.10e-75

flagellar motor stator protein MotA;


Pssm-ID: 171532 [Multi-domain]  Cd Length: 287  Bit Score: 232.72  E-value: 1.10e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490360254   1 MLILIGYIIVTGTVIGGYLMVGGHMGALYQPAEFVIILGAGFGAFVVGNSGKSIVALGKVLPRLFRRSSYNKAMSMDLMA 80
Cdd:PRK12482   1 MQKLFGLLVVMGCVFGGYLMSGGSLSSIWQPGEIIIILGAGIGAMILGNPKSVLKEMWHQIKGVIRRKEYGVEFQRQLLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490360254  81 LLFQLLNKSRQQGLLALEKDIENPQESDIFSQYPRILKDPAALMFLVDYLRLMITSNLQSHEIEALMDEELETFRQESEV 160
Cdd:PRK12482  81 LLYELLEMVQEGGLKRLDQHIEIPEESSLFQKYPLILQQKRLITFISDNFRLMAMGKINQHELEGILDQELDAVEEELLQ 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490360254 161 PASGLNMVGDSMPAFGIVAAVLGVVNALGSADRPAGELGALIAHAMVGTFLGILVAYGFILPLASLIRLRSGEQLKMLEC 240
Cdd:PRK12482 161 PSRSLQRIAEAMPGFGICAAVLGIIITMQSIDGSIAEIGLKVAAALVGTFLGVFICYCLMDPLANAMEQEIKKELSLLEC 240

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 490360254 241 IKVTFLSSLQGYPPQIAVEFGRKVLFSADRPSFTELEDKVREV 283
Cdd:PRK12482 241 VRTVLVAHVAGKPTLLAVDAGRKLLPLDNKPTFATLDSWINAM 283
MotA_N pfam20560
Motility protein A N-terminal; This entry represents the N-terminal domain of Motility protein ...
 4-93 5.76e-37

Motility protein A N-terminal; This entry represents the N-terminal domain of Motility protein A (MotA). MotA is a membrane protein that forms the stator element of the flagellar motor complex together with MotB with 5:2 stoichiometry, which couples ion flow across the cytoplasmic membrane to generate torque, and thus, it is required for rotation of the flagellar motor. This domain contains conserved torque-generating charged residues at the C-terminal and is adjacent pfam01618, which represents MotA TMH3 and TMH4.


Pssm-ID: 466709 [Multi-domain]  Cd Length: 91  Bit Score: 126.74  E-value: 5.76e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490360254    4 LIGYIIVTGTVIGGYLMVGGHMGALYQ-PAEFVIILGAGFGAFVVGNSGKSIVALGKVLPRLFRRSSYNKAMSMDLMALL 82
Cdd:pfam20560   1 IIGIVVVLGCVFGGYALAGGHLGVLWQlPFELLIIGGAAIGAFIIANPMKVLKATLKALPKAFKGSKYKKADYLDLLALL 80

                          90
                  ....*....|.
gi 490360254   83 FQLLNKSRQQG 93
Cdd:pfam20560  81 YELLRKARKEG 91
PRK08124 PRK08124
flagellar motor protein MotA; Validated
 4-256 6.28e-19

flagellar motor protein MotA; Validated


Pssm-ID: 181238 [Multi-domain]  Cd Length: 263  Bit Score: 84.24  E-value: 6.28e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490360254   4 LIGYIIVTGTVIGGYLMVGGHMGALYQPAEFVIILGAGFGAFVVGNSGKSIvalgKVLPRLFRRSSYNKAMS--MDLMAL 81
Cdd:PRK08124   6 IIGLILGLIAVVVGMVVKGASLAVLLNPAAILIIIVGTIAAVMIAFPMSEL----KKVPKLFKVLFKEKKDPskEELIEQ 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490360254  82 LFQLLNKSRQQGLLALEKDIENpqesdifsqypriLKDPaalmFLVDYLRLMITSNLQSHeIEALMDEELETFRQESEVP 161
Cdd:PRK08124  82 FVEWASESRREGLLALEAQLDE-------------IDDP----FLKRGLKMVIDGQSPEF-IRDVLEEEIEAMEERHAAG 143

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490360254 162 ASGLNMVGDSMPAFGIVAAVLGVVNALGSADRPAgELGALIAHAMVGTFLGILVAYGFILPLASLIRLRSGEQLK----M 237
Cdd:PRK08124 144 AAIFTQAGTYAPTLGVLGAVIGLIAALGNLSDIE-KLGHAISAAFVATLLGIFTGYVLWHPFANKLKRKSKEEIElkyiI 222

                        250
                 ....*....|....*....
gi 490360254 238 LECIkvtfLSSLQGYPPQI 256
Cdd:PRK08124 223 IEGV----LAIQEGNAPRV 237
motC PRK09109
flagellar motor protein; Reviewed
 2-239 9.14e-18

flagellar motor protein; Reviewed


Pssm-ID: 181654 [Multi-domain]  Cd Length: 246  Bit Score: 80.37  E-value: 9.14e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490360254   2 LILIGYIIVTGTVIGGYLMVGGHMGALYQPAEFVIILGAGFGAFVVGNSGKSIVALGKVLPRLFRRSSYNKAmsmDLMAL 81
Cdd:PRK09109   4 LSLIGLILAFVAIIGGQVLEGGHLGSLLNGPAFLIVIGGTLGAVLLQTPLAVFKRAFKILRWVFFPPRSDLE---GGIDR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490360254  82 LFQLLNKSRQQGLLALEKDIEnpQESDIFSQyprilkdpAALMFLVDylrlmitsNLQSHEIEALMDEELETFRQESEVP 161
Cdd:PRK09109  81 IVEWSNTARKEGLLGLEDVAD--REPDPFAR--------KGLQLLVD--------GAEPESIRSVLEVEIDTQEHRDLQA 142

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490360254 162 ASGLNMVGDSMPAFGIVAAVLGVVNALGSADRPAgELGALIAHAMVGTFLGILVAYGFILPLA----SLIRLRSGEQLKM 237
Cdd:PRK09109 143 AKVFESMGGYAPTIGIIGAVMGLIHVMENLADPS-QLGSGIAVAFVATIYGVASANLLFLPVAnklkSIIHRQSRYREML 221


                 ..
gi 490360254 238 LE 239
Cdd:PRK09109 222 VE 223
PRK08456 PRK08456
flagellar motor protein MotA; Validated
 4-222 1.02e-12

flagellar motor protein MotA; Validated


Pssm-ID: 181434 [Multi-domain]  Cd Length: 257  Bit Score: 66.67  E-value: 1.02e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490360254   4 LIGYIIVTGTVIGGYLMVGGHMGALYQPAEFVIILGAGFGAFVVGNSGKSIVALGKVLPRLFRRSSYNKAmsmDLMALLF 83
Cdd:PRK08456   6 ILGMVLAVASISVGDILEGGNPLHVIHLSSFIIVVPTALFAAMTATHKKYVKAAYKELKIVFKNPGVNLN---ERIKQLV 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490360254  84 QLLNKSRQQGLLALEKDIENpQESDIFSQyprilkdpaALMFLVDylrlmitsNLQSHEIEALMDEELETFRQESEVPAS 163
Cdd:PRK08456  83 ELATLARKDGVLALEGRVAQ-IEDEFLKN---------GLSMLVD--------GKDLEEIKESMEIQIEEMEEYYHGAAH 144

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 490360254 164 GLNMVGDSMPAFGIVAAVLGVVNALGSADRPAgELGALIAHAMVGTFLGILVAYGFILP 222
Cdd:PRK08456 145 YWITAGETCPTMGLVGAVMGLMLALQKLDNPA-EMAAGIAGAFTATVTGIMGSYALFGP 202
PRK06926 PRK06926
flagellar motor protein MotP; Reviewed
 3-235 6.07e-09

flagellar motor protein MotP; Reviewed


Pssm-ID: 180755 [Multi-domain]  Cd Length: 271  Bit Score: 55.87  E-value: 6.07e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490360254   3 ILIGYIIVTGTVIGGYLMVGghMGALYQPAEFVIILGAGFGAFVVGNSGKSIVALGKVLPRLFRRSSYNKAmsmDLMALL 82
Cdd:PRK06926  12 IFLGITIVVLGVISNSGLSG--FLSFIDLTSILIVTGGLCAALFISFSPKDLKLAPRVLKQAFQSQEDDVE---ELVQTF 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490360254  83 FQLLNKSRQQGLLALEKDIENpqesdifsqypriLKDP---AALMFLVDYLRLMITSNLQSHEIEAlMDEELETFRQESE 159
Cdd:PRK06926  87 VSLSEKARREGLLSLEAELEE-------------VKDPfikKGLLLAIDGWEPETIRDIMMAEIAA-MEERHRKGRRIFE 152

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 490360254 160 vpasglnMVGDSMPAFGIVAAVLGVVNALGSADRPAgELGALIAHAMVGTFLGILVAYGFILPLASLIRLRSGEQL 235
Cdd:PRK06926 153 -------KAGEYAPAWGMIGTLVGLVLMLKNLNDPS-TLGPNMAIALLTTLYGTLLANLVFLPIAAKLEEKTEEEV 220
PRK06743 PRK06743
flagellar motor protein MotP; Reviewed
 5-224 1.25e-05

flagellar motor protein MotP; Reviewed


Pssm-ID: 136027  Cd Length: 254  Bit Score: 45.74  E-value: 1.25e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490360254   5 IGYIIVTGTVIGGYLMVGGHMGAL---YQPAEFVIILGAGFGAFVVGNSGKSIVALGKVLPRLFRRSSYNKAmsmDLMAL 81
Cdd:PRK06743   1 VGIIVGFAIVIAAIMLGGGGIKAFknfLDVSSILIVIGGTTATIVVAYRFGEIKKYTKSIFTVLHRREEDLE---QLTDL 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490360254  82 LFQLLNKSRQQGLLALEKD---IENPqesdifsqyprilkdpaalmFLVDYLRLMItSNLQSHEIEALMDEELETFRQES 158
Cdd:PRK06743  78 FVDFSKKSKKHGLLSLEVDgeqVDNP--------------------FIQKGIRLML-SGYDEDELKEVLMKDVETEVYEL 136

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 490360254 159 EVPASGLNMVGDSMPAFGIVAAVLGVVNALGSAdRPAGELGALIAHAMVGTFLGILVAYGFILPLA 224
Cdd:PRK06743 137 RKGAALLDKIGDFAPAWGMIGTLIGLIIMLQNL-QDTSQIGTGMAVAMLTTLYGSVLANMIAIPLA 201
PRK08990 PRK08990
flagellar motor protein PomA; Reviewed
 4-234 4.31e-05

flagellar motor protein PomA; Reviewed


Pssm-ID: 181604 [Multi-domain]  Cd Length: 254  Bit Score: 43.87  E-value: 4.31e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490360254   4 LIGYIIVTGTVIGGYLMvGGHMGALYQPAEFVIILGAGFGAFVVGNSGKSIVALGKVLPRLFrrsSYNKAMSMDLMALLF 83
Cdd:PRK08990   6 LIGLIGAFAFVIMAMVL-GGGIGMFVDVPSILIVFGGSLFVVLMKFNLGQFFGAVKIAGKAF---MFKIDKPEDLIEQIV 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490360254  84 QLLNKSRQQGLLALE-KDIENPqesdiFSQyprilkdpAALMFLVDylrlmitsnlqSHEIE---ALMDEELETFRQESE 159
Cdd:PRK08990  82 EMADAARKGGFLALEeAEISNS-----FMQ--------KGVDLLVD-----------GHDGDvvrAALEKDIALTEERHE 137

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 490360254 160 VPASGLNMVGDSMPAFGIVAAVLGVVNALGSADRPAgELGALIAHAMVGTFLGILVAYGFILPLASLIRLRSGEQ 234
Cdd:PRK08990 138 TGIGIFRAFGDVAPAMGMIGTLIGLVAMLSNMDDPK-SIGPAMAVALLTTLYGAVLANMVAIPIADKLSLRMGEE 211
MotA_ExbB pfam01618
MotA/TolQ/ExbB proton channel family; This family groups together integral membrane proteins ...
 125-235 1.41e-04

MotA/TolQ/ExbB proton channel family; This family groups together integral membrane proteins that appear to be involved translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flageller motor that uses a proton gradient to generate rotational motion in the flageller. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.


Pssm-ID: 460268  Cd Length: 120  Bit Score: 40.54  E-value: 1.41e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490360254  125 FLVDYLRLMItSNLQSHEIEALMDEELETFRQESEVPASGLNMVGDSMPAFGIVAAVLGVVNALGS-ADRPAG--ELGAL 201
Cdd:pfam01618   9 FLKKGLQLVV-DGTDPEEIRRALEEAIDREEERLERGLSILATIGSLAPLLGLLGTVLGLIHAFQNlGDAGPGlsALAPG 87

                          90       100       110
                  ....*....|....*....|....*....|....
gi 490360254  202 IAHAMVGTFLGILVAYgFILPLASLIRLRSGEQL 235
Cdd:pfam01618  88 IAEALIATAYGLFVAI-PALPFYNKLKRRSEREV 120
T3SS_SctB_pilot NF038055
type III secretion system translocon subunit SctB; One SctB and four SctE subunits, located at ...
 75-112 3.29e-03

type III secretion system translocon subunit SctB; One SctB and four SctE subunits, located at the tip of the type III secretion system (T3SS) injectosome, combine to form the translocon (translocator pore) in the membrane of targeted cells. Species-specific names for this highly variable component of T3SS include YopD, EspB, IpaC, SipC, etc.


Pssm-ID: 411647 [Multi-domain]  Cd Length: 311  Bit Score: 38.56  E-value: 3.29e-03
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 490360254  75 SMDLMALLFQLLNKSRQQGLlaLEKDIENpqESDIFSQ 112
Cdd:NF038055  84 SLALMSLLYQVAKLSREQQL--QQRDIEV--KANISSQ 117
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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