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Conserved domains on  [gi|490365258|ref|WP_004244922|]
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MULTISPECIES: fimbrial protein [Proteus]

Protein Classification

fimbrial protein( domain architecture ID 646)

fimbrial protein similar to the type-1 fimbrial major subunit FimA, which is transported to the outer membrane by the lipoprotein sorting system, and a mature or processed FimA protein on the outer membrane is autopolymerized to form Fim fimbriae

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Fimbrial super family cl01416
Fimbrial protein;
4-161 2.32e-40

Fimbrial protein;


The actual alignment was detected with superfamily member PRK15287:

Pssm-ID: 445401 [Multi-domain]  Cd Length: 158  Bit Score: 133.29  E-value: 2.32e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490365258   4 LQSICLIILLNST-AVMAADspNLKLFGTLLVPPPCVISNDERIEVFFGkNVGINKVDGINYTESVNYTLVCDANLKG-- 80
Cdd:PRK15287   1 MKKMALTMLMGGSlAAQAAD--NLKFHGTLISPPNCTINNDQTIDVKFG-NLLINKIDGTRYAQNVPYEITCDSTVRDet 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490365258  81 WDLGLSIIGPKTQFDEAALQTNIPDLGIHLTQDGKPFKLNERIAISPDSPPVIQAVPVKRPGSTLPEGAFEVSATLLAEY 160
Cdd:PRK15287  78 MAMTLTLSGSVSDFNPAAVNTSVAGLGIELRQNDQPFTLGSTITVNEQSIPVLKAIPVKKSGASLKEGGFDATATLQVDY 157


                 .
gi 490365258 161 Q 161
Cdd:PRK15287 158 Q 158
 
Name Accession Description Interval E-value
PRK15287 PRK15287
fimbrial minor subunit StfF;
4-161 2.32e-40

fimbrial minor subunit StfF;


Pssm-ID: 185187 [Multi-domain]  Cd Length: 158  Bit Score: 133.29  E-value: 2.32e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490365258   4 LQSICLIILLNST-AVMAADspNLKLFGTLLVPPPCVISNDERIEVFFGkNVGINKVDGINYTESVNYTLVCDANLKG-- 80
Cdd:PRK15287   1 MKKMALTMLMGGSlAAQAAD--NLKFHGTLISPPNCTINNDQTIDVKFG-NLLINKIDGTRYAQNVPYEITCDSTVRDet 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490365258  81 WDLGLSIIGPKTQFDEAALQTNIPDLGIHLTQDGKPFKLNERIAISPDSPPVIQAVPVKRPGSTLPEGAFEVSATLLAEY 160
Cdd:PRK15287  78 MAMTLTLSGSVSDFNPAAVNTSVAGLGIELRQNDQPFTLGSTITVNEQSIPVLKAIPVKKSGASLKEGGFDATATLQVDY 157


                 .
gi 490365258 161 Q 161
Cdd:PRK15287 158 Q 158
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
1-161 6.92e-12

Pilin (type 1 fimbrial protein) [Cell motility];


Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 60.05  E-value: 6.92e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490365258   1 MNKLQSICLIILLNSTAVMAADSPNLKLFGTlLVPPPCVISNDER-IEVFFGkNVGINKVDGINYT---ESVNYTLV-CD 75
Cdd:COG3539    1 MKKLLLALLLALALSAAAAAAADGTVNFTGT-VVAPTCTINTGSKdQTVDLG-TVSTSDLNGVGSTsgpKPFSIKLTnCD 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490365258  76 ANLKGwDLGLSIIGPKTQFDEAALQTNIPD----LGIHLT-QDGKPFKLNER---IAISPDSPPVI--QAVPVKrPGSTL 145
Cdd:COG3539   79 AGTSN-SVKVTFTGTADSANPGLLANTGSGgasgVGIQLLdSDGTPIPLGTPssaVTLTSNGSATLpfYARYVA-TGATV 156

                        170
                 ....*....|....*.
gi 490365258 146 PEGAFEVSATLLAEYQ 161
Cdd:COG3539  157 TAGSFNATATFTIDYQ 172
Fimbrial pfam00419
Fimbrial protein;
31-161 2.02e-09

Fimbrial protein;


Pssm-ID: 425671  Cd Length: 152  Bit Score: 53.21  E-value: 2.02e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490365258   31 TLLVPPPCVISNDERIEVFFGKnVGINKVDGINYTES---VNYTLVCDANLKGWDLGLSIIG-PKTQFDEAALQTN---- 102
Cdd:pfam00419   7 VTRVPATCKITAGTPIEVDFGQ-IPVNELNAGGEGSRqkpFSITLECSSGSSAVKVTVGLFGtADASSPNLLLTGNgaga 85

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 490365258  103 IPDLGIHL-TQDGKPFKLNERIAISPDSPP-------VIQAVPVKRPGSTLPEGAFEVSATLLAEYQ 161
Cdd:pfam00419  86 ATGVGIRLyDANGGALPPNNGTSSIPVSATaavatgiTFTASLVATTGGTPTAGDFNATATIVVDYQ 152
 
Name Accession Description Interval E-value
PRK15287 PRK15287
fimbrial minor subunit StfF;
4-161 2.32e-40

fimbrial minor subunit StfF;


Pssm-ID: 185187 [Multi-domain]  Cd Length: 158  Bit Score: 133.29  E-value: 2.32e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490365258   4 LQSICLIILLNST-AVMAADspNLKLFGTLLVPPPCVISNDERIEVFFGkNVGINKVDGINYTESVNYTLVCDANLKG-- 80
Cdd:PRK15287   1 MKKMALTMLMGGSlAAQAAD--NLKFHGTLISPPNCTINNDQTIDVKFG-NLLINKIDGTRYAQNVPYEITCDSTVRDet 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490365258  81 WDLGLSIIGPKTQFDEAALQTNIPDLGIHLTQDGKPFKLNERIAISPDSPPVIQAVPVKRPGSTLPEGAFEVSATLLAEY 160
Cdd:PRK15287  78 MAMTLTLSGSVSDFNPAAVNTSVAGLGIELRQNDQPFTLGSTITVNEQSIPVLKAIPVKKSGASLKEGGFDATATLQVDY 157


                 .
gi 490365258 161 Q 161
Cdd:PRK15287 158 Q 158
PRK15276 PRK15276
putative fimbrial subunit SteE; Provisional
 9-161 3.54e-32

putative fimbrial subunit SteE; Provisional


Pssm-ID: 185179  Cd Length: 153  Bit Score: 112.12  E-value: 3.54e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490365258   9 LIILLNSTAVMAADspNLKLFGTLLVPPPCVISNDERIEVFFGkNVGINKVDGINYTESVNYTLVCDANLK--GWDLGLS 86
Cdd:PRK15276   2 LILTLLITQFACAD--NLTFHGKLINPPACTINNGETLEVSFG-SVIIDNIDGVNYLTEIPWTLTCDSSFRddALTFTLS 78

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 490365258  87 IIGPKTQFDEAALQTNIPDLGIHLTQDGKPFKLNERIAISPDSPPVIQAVPVKRPGSTLPEGAFEVSATLLAEYQ 161
Cdd:PRK15276  79 YLGTATPYSAKALTTNVPELGIELQQNGTVFPPGTSLTINESSLPTLKAVPVKQPGKEPAEGDFEAFATLQVDYQ 153
PRK15286 PRK15286
putative minor fimbrial subunit StfE; Provisional
 8-161 1.01e-18

putative minor fimbrial subunit StfE; Provisional


Pssm-ID: 185186  Cd Length: 170  Bit Score: 78.25  E-value: 1.01e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490365258   8 CLIILLNSTAVMAADSPNLKLFGTLLV--PPPCVISNDErieVFFGkNVGINKVDGINYTESVNYTLVCDANLKGWdLGL 85
Cdd:PRK15286  13 CAAMLSAVSMPLAAGSKTVNMTLTIVVnaAPPCTVTGGE---VEFG-NVLTTKVDGVNYRQAVGYRLSCNGRVSDY-LKL 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490365258  86 SIIGPKTQFD-EAALQTNIPDLGIHL--TQDGKPFKLNE----RIAISPDSPPVIQAVPVKRPGSTLPEGAFEVSATLLA 158
Cdd:PRK15286  88 QIQGNAVTINgESVLQTDVDGLGIRLqtATDGALISPGNtqwlSFQYSGGSGPAIEAIPVKNNGVTLTGGAFNAGATLVV 167


                 ...
gi 490365258 159 EYQ 161
Cdd:PRK15286 168 DYQ 170
PRK15275 PRK15275
putative fimbrial protein SteD; Provisional
 16-161 1.22e-15

putative fimbrial protein SteD; Provisional


Pssm-ID: 185178  Cd Length: 166  Bit Score: 70.16  E-value: 1.22e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490365258  16 TAVMAADSPNLKLFGTLLV--PPPCVISNderIEVFFGkNVGINKVDGINYTESVNYTLVCDANLKGWdLGLSIIGPKTQ 93
Cdd:PRK15275  17 TGTEAAGTKTVQLELHLVVtqPPPCTVGG---ASVEFG-DVLTTKVGDASQTKPVGYSLNCDGRASDY-LKLQIQGTTTT 91

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 490365258  94 FD-EAALQTNIPDLGIHLTQDGK----PFKLNE--RIAISPDSPPVIQAVPVKRPGSTLPEGAFEVSATLLAEYQ 161
Cdd:PRK15275  92 ISgEQVLQTSVQGLGIRIQQAGNkqlvPVGITDwlNFTLSGSNGPELEAVPVKEPTTQLAGGDFNASATLVVDYQ 166
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
1-161 6.92e-12

Pilin (type 1 fimbrial protein) [Cell motility];


Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 60.05  E-value: 6.92e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490365258   1 MNKLQSICLIILLNSTAVMAADSPNLKLFGTlLVPPPCVISNDER-IEVFFGkNVGINKVDGINYT---ESVNYTLV-CD 75
Cdd:COG3539    1 MKKLLLALLLALALSAAAAAAADGTVNFTGT-VVAPTCTINTGSKdQTVDLG-TVSTSDLNGVGSTsgpKPFSIKLTnCD 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490365258  76 ANLKGwDLGLSIIGPKTQFDEAALQTNIPD----LGIHLT-QDGKPFKLNER---IAISPDSPPVI--QAVPVKrPGSTL 145
Cdd:COG3539   79 AGTSN-SVKVTFTGTADSANPGLLANTGSGgasgVGIQLLdSDGTPIPLGTPssaVTLTSNGSATLpfYARYVA-TGATV 156

                        170
                 ....*....|....*.
gi 490365258 146 PEGAFEVSATLLAEYQ 161
Cdd:COG3539  157 TAGSFNATATFTIDYQ 172
Fimbrial pfam00419
Fimbrial protein;
31-161 2.02e-09

Fimbrial protein;


Pssm-ID: 425671  Cd Length: 152  Bit Score: 53.21  E-value: 2.02e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490365258   31 TLLVPPPCVISNDERIEVFFGKnVGINKVDGINYTES---VNYTLVCDANLKGWDLGLSIIG-PKTQFDEAALQTN---- 102
Cdd:pfam00419   7 VTRVPATCKITAGTPIEVDFGQ-IPVNELNAGGEGSRqkpFSITLECSSGSSAVKVTVGLFGtADASSPNLLLTGNgaga 85

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 490365258  103 IPDLGIHL-TQDGKPFKLNERIAISPDSPP-------VIQAVPVKRPGSTLPEGAFEVSATLLAEYQ 161
Cdd:pfam00419  86 ATGVGIRLyDANGGALPPNNGTSSIPVSATaavatgiTFTASLVATTGGTPTAGDFNATATIVVDYQ 152
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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