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Conserved domains on  [gi|490365403|ref|WP_004245067|]
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MULTISPECIES: pleiotropic regulatory protein RsmS [Enterobacterales]

Protein Classification

DUF2496 domain-containing protein( domain architecture ID 10013714)

DUF2496 domain-containing protein similar to Escherichia coli protein YbaM

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK11038 PRK11038
hypothetical protein; Provisional
 1-44 5.86e-17

hypothetical protein; Provisional


:

Pssm-ID: 182920  Cd Length: 47  Bit Score: 65.80  E-value: 5.86e-17
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....
gi 490365403  1 MELKDAPKSVQLAVDLIYLFETNHIDPNTVLEALEIVRVDYEKK 44
Cdd:PRK11038  1 MSLENAPDEVKLAVDLIYLLEENEIPPRTALAALEIVKRDYEKK 44
 
Name Accession Description Interval E-value
PRK11038 PRK11038
hypothetical protein; Provisional
 1-44 5.86e-17

hypothetical protein; Provisional


Pssm-ID: 182920  Cd Length: 47  Bit Score: 65.80  E-value: 5.86e-17
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....
gi 490365403  1 MELKDAPKSVQLAVDLIYLFETNHIDPNTVLEALEIVRVDYEKK 44
Cdd:PRK11038  1 MSLENAPDEVKLAVDLIYLLEENEIPPRTALAALEIVKRDYEKK 44
DUF2496 pfam10689
Protein of unknown function (DUF2496); This family consists of proteins from ...
 3-44 9.83e-17

Protein of unknown function (DUF2496); This family consists of proteins from Gammaproteobacteria spp. Many members are annotated as being like the E coli protein YbaM.


Pssm-ID: 431437  Cd Length: 43  Bit Score: 65.38  E-value: 9.83e-17
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 490365403   3 LKDAPKSVQLAVDLIYLFETNHIDPNTVLEALEIVRVDYEKK 44
Cdd:pfam10689  2 LENAPEEVKLAVDLIYLLESNQIEPETALAALEIVKRDFEKK 43
 
Name Accession Description Interval E-value
PRK11038 PRK11038
hypothetical protein; Provisional
 1-44 5.86e-17

hypothetical protein; Provisional


Pssm-ID: 182920  Cd Length: 47  Bit Score: 65.80  E-value: 5.86e-17
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....
gi 490365403  1 MELKDAPKSVQLAVDLIYLFETNHIDPNTVLEALEIVRVDYEKK 44
Cdd:PRK11038  1 MSLENAPDEVKLAVDLIYLLEENEIPPRTALAALEIVKRDYEKK 44
DUF2496 pfam10689
Protein of unknown function (DUF2496); This family consists of proteins from ...
 3-44 9.83e-17

Protein of unknown function (DUF2496); This family consists of proteins from Gammaproteobacteria spp. Many members are annotated as being like the E coli protein YbaM.


Pssm-ID: 431437  Cd Length: 43  Bit Score: 65.38  E-value: 9.83e-17
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 490365403   3 LKDAPKSVQLAVDLIYLFETNHIDPNTVLEALEIVRVDYEKK 44
Cdd:pfam10689  2 LENAPEEVKLAVDLIYLLESNQIEPETALAALEIVKRDFEKK 43
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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