NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|490367278|ref|WP_004246942|]
View 

MULTISPECIES: 30S ribosomal protein S4 [Enterobacterales]

Protein Classification

ribosomal protein uS4 family protein( domain architecture ID 11424867)

universal ribosomal protein uS4 family protein similar to Homo sapiens U3 small nucleolar ribonucleoprotein protein IMP3 that is required for the early cleavages during pre-18S ribosomal RNA processing

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
RpsD COG0522
Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; ...
 1-206 4.40e-135

Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein S4 or related protein is part of the Pathway/BioSystem: Ribosome 30S subunit


:

Pssm-ID: 440288 [Multi-domain]  Cd Length: 204  Bit Score: 376.72  E-value: 4.40e-135
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490367278   1 MARYLGPKLKLSRREGTDLFLKSgvraiDTKCKLE---QAPGQHGARKPRLSDYGVQLREKQKVRRIYGVLERQFRNYYK 77
Cdd:COG0522    1 MARYTGPKCKLCRREGVKLFLKG-----ERKCALErrpYPPGQHGQRRKKLSDYGLQLREKQKLRRIYGVLEKQFRRYFE 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490367278  78 EATRLKGNTGENLLTLLEGRLDNVVYRMGFGATRAEARQMVSHKAIMVNGRVVNIASYQVSPNDVVSVREKSKKQSRIKA 157
Cdd:COG0522   76 EAARRKGNTGENLLQLLERRLDNVVYRLGFAPTRAQARQLVSHGHILVNGKKVNIPSYQVKPGDVIEVREKSKKLPRIKE 155

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 490367278 158 ALELAEQREKPTWLEVDAAKMEGVFKRIPERTDLSADINEHLIVELYSK 206
Cdd:COG0522  156 ALESAEQRGVPEWLEVDAEKLSGTVVRLPEREEIPVPINEQLIVELYSR 204
 
Name Accession Description Interval E-value
RpsD COG0522
Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; ...
 1-206 4.40e-135

Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein S4 or related protein is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440288 [Multi-domain]  Cd Length: 204  Bit Score: 376.72  E-value: 4.40e-135
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490367278   1 MARYLGPKLKLSRREGTDLFLKSgvraiDTKCKLE---QAPGQHGARKPRLSDYGVQLREKQKVRRIYGVLERQFRNYYK 77
Cdd:COG0522    1 MARYTGPKCKLCRREGVKLFLKG-----ERKCALErrpYPPGQHGQRRKKLSDYGLQLREKQKLRRIYGVLEKQFRRYFE 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490367278  78 EATRLKGNTGENLLTLLEGRLDNVVYRMGFGATRAEARQMVSHKAIMVNGRVVNIASYQVSPNDVVSVREKSKKQSRIKA 157
Cdd:COG0522   76 EAARRKGNTGENLLQLLERRLDNVVYRLGFAPTRAQARQLVSHGHILVNGKKVNIPSYQVKPGDVIEVREKSKKLPRIKE 155

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 490367278 158 ALELAEQREKPTWLEVDAAKMEGVFKRIPERTDLSADINEHLIVELYSK 206
Cdd:COG0522  156 ALESAEQRGVPEWLEVDAEKLSGTVVRLPEREEIPVPINEQLIVELYSR 204
rpsD PRK05327
30S ribosomal protein S4; Validated
 1-206 3.91e-133

30S ribosomal protein S4; Validated


Pssm-ID: 235411 [Multi-domain]  Cd Length: 203  Bit Score: 371.74  E-value: 3.91e-133
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490367278   1 MARYLGPKLKLSRREGTDLFLKsGVRAIDTKCkleqAPGQHGA--RKPRLSDYGVQLREKQKVRRIYGVLERQFRNYYKE 78
Cdd:PRK05327   1 MARYTGPKCKLSRRLGVDLFKS-GKRCLKRKY----PPGQHGQrrRKPKLSDYGLQLREKQKLRRIYGVLEKQFRRYFKE 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490367278  79 ATRLKGNTGENLLTLLEGRLDNVVYRMGFGATRAEARQMVSHKAIMVNGRVVNIASYQVSPNDVVSVREKSKKQSRIKAA 158
Cdd:PRK05327  76 AARRKGNTGENLLQLLESRLDNVVYRLGFAPTRRQARQLVSHGHILVNGKKVNIPSYRVKPGDVIEVREKSKKLPRIKEA 155

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 490367278 159 LELAEQREKPTWLEVDAAKMEGVFKRIPERTDLSADINEHLIVELYSK 206
Cdd:PRK05327 156 LELAERRGVPDWLEVDAEKLEGTFKRLPEREEIPVPINEQLIVELYSK 203
rpsD_bact TIGR01017
ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and ...
 3-206 1.23e-110

ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 200066 [Multi-domain]  Cd Length: 200  Bit Score: 314.63  E-value: 1.23e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490367278    3 RYLGPKLKLSRREGTDLFLKSgvRAIDTKCKLeqAPGQHGARKPRLSDYGVQLREKQKVRRIYGVLERQFRNYYKEATRL 82
Cdd:TIGR01017   1 RYTGPKFKLSRRLGVNLFGKS--RKLLLKRKY--PPGQHGQRRKKLSDYGLQLQEKQKLKFMYGITEKQFRKYFKEAKKL 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490367278   83 KGNTGENLLTLLEGRLDNVVYRMGFGATRAEARQMVSHKAIMVNGRVVNIASYQVSPNDVVSVREKSKKQSRIKAALELA 162
Cdd:TIGR01017  77 KGNTGENLLRLLESRLDNVVYRLGFAPTRFAARQLVSHGHILVNGKKVDIPSYQVRPGDIISIKEKSKKIPLVKENLETN 156

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 490367278  163 EQREKPTWLEVDAAKMEGVFKRIPERTDLSADINEHLIVELYSK 206
Cdd:TIGR01017 157 GQRNIPSWLEVDKKTLEGKVLRVPERSQLPLPINESLVVEYYSR 200
Ribosomal_S4 pfam00163
Ribosomal protein S4/S9 N-terminal domain; This family includes small ribosomal subunit S9 ...
 3-95 9.50e-35

Ribosomal protein S4/S9 N-terminal domain; This family includes small ribosomal subunit S9 from prokaryotes and S16 from metazoans. This domain is predicted to bind to ribosomal RNA. This domain is composed of four helices in the known structure. However the domain is discontinuous in sequence and the alignment for this family contains only the first three helices.


Pssm-ID: 459696  Cd Length: 96  Bit Score: 118.42  E-value: 9.50e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490367278    3 RYLGPKLKLSRREGTDLFLKsGVRAIDTKCKLE-----QAPGQHGARKpRLSDYGVQLREKQKVRRIYGVLERQFRNYYK 77
Cdd:pfam00163   1 RYKGPEQKLLRRVGFKLWKK-GRCHRELKVAQNrreypKYPGQHGKIR-KLSEYLLQLREKQKVRRKYGLLEKQLRKLYD 78

                          90
                  ....*....|....*...
gi 490367278   78 EATRLKGNTGENLLTLLE 95
Cdd:pfam00163  79 MGLKLKGVTGENLLQLLE 96
S4 cd00165
S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, ...
 97-156 3.40e-18

S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.


Pssm-ID: 238095 [Multi-domain]  Cd Length: 70  Bit Score: 74.98  E-value: 3.40e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 490367278  97 RLDNVVYRMGFGATRAEARQMVSHKAIMVNGRVVNIASYQVSPNDVVSVREKSKKQSRIK 156
Cdd:cd00165    2 RLDKILARLGLAPSRSEARQLIKHGHVLVNGKVVTKPSYKVKPGDVIEVDGKSIEEDIVY 61
S4 smart00363
S4 RNA-binding domain;
97-151 1.55e-15

S4 RNA-binding domain;


Pssm-ID: 214638 [Multi-domain]  Cd Length: 60  Bit Score: 68.00  E-value: 1.55e-15
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 490367278    97 RLDNVVYRMGFGATRAEARQMVSHKAIMVNGRVVNIASYQVSPNDVVSVREKSKK 151
Cdd:smart00363   2 RLDKFLARLGLAPSRSQARRLIEQGRVKVNGKKVTKPSYIVKPGDVISVRGKELK 56
 
Name Accession Description Interval E-value
RpsD COG0522
Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; ...
 1-206 4.40e-135

Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; Ribosomal protein S4 or related protein is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 440288 [Multi-domain]  Cd Length: 204  Bit Score: 376.72  E-value: 4.40e-135
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490367278   1 MARYLGPKLKLSRREGTDLFLKSgvraiDTKCKLE---QAPGQHGARKPRLSDYGVQLREKQKVRRIYGVLERQFRNYYK 77
Cdd:COG0522    1 MARYTGPKCKLCRREGVKLFLKG-----ERKCALErrpYPPGQHGQRRKKLSDYGLQLREKQKLRRIYGVLEKQFRRYFE 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490367278  78 EATRLKGNTGENLLTLLEGRLDNVVYRMGFGATRAEARQMVSHKAIMVNGRVVNIASYQVSPNDVVSVREKSKKQSRIKA 157
Cdd:COG0522   76 EAARRKGNTGENLLQLLERRLDNVVYRLGFAPTRAQARQLVSHGHILVNGKKVNIPSYQVKPGDVIEVREKSKKLPRIKE 155

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 490367278 158 ALELAEQREKPTWLEVDAAKMEGVFKRIPERTDLSADINEHLIVELYSK 206
Cdd:COG0522  156 ALESAEQRGVPEWLEVDAEKLSGTVVRLPEREEIPVPINEQLIVELYSR 204
rpsD PRK05327
30S ribosomal protein S4; Validated
 1-206 3.91e-133

30S ribosomal protein S4; Validated


Pssm-ID: 235411 [Multi-domain]  Cd Length: 203  Bit Score: 371.74  E-value: 3.91e-133
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490367278   1 MARYLGPKLKLSRREGTDLFLKsGVRAIDTKCkleqAPGQHGA--RKPRLSDYGVQLREKQKVRRIYGVLERQFRNYYKE 78
Cdd:PRK05327   1 MARYTGPKCKLSRRLGVDLFKS-GKRCLKRKY----PPGQHGQrrRKPKLSDYGLQLREKQKLRRIYGVLEKQFRRYFKE 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490367278  79 ATRLKGNTGENLLTLLEGRLDNVVYRMGFGATRAEARQMVSHKAIMVNGRVVNIASYQVSPNDVVSVREKSKKQSRIKAA 158
Cdd:PRK05327  76 AARRKGNTGENLLQLLESRLDNVVYRLGFAPTRRQARQLVSHGHILVNGKKVNIPSYRVKPGDVIEVREKSKKLPRIKEA 155

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 490367278 159 LELAEQREKPTWLEVDAAKMEGVFKRIPERTDLSADINEHLIVELYSK 206
Cdd:PRK05327 156 LELAERRGVPDWLEVDAEKLEGTFKRLPEREEIPVPINEQLIVELYSK 203
rpsD_bact TIGR01017
ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and ...
 3-206 1.23e-110

ribosomal protein S4, bacterial/organelle type; This model finds organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 200066 [Multi-domain]  Cd Length: 200  Bit Score: 314.63  E-value: 1.23e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490367278    3 RYLGPKLKLSRREGTDLFLKSgvRAIDTKCKLeqAPGQHGARKPRLSDYGVQLREKQKVRRIYGVLERQFRNYYKEATRL 82
Cdd:TIGR01017   1 RYTGPKFKLSRRLGVNLFGKS--RKLLLKRKY--PPGQHGQRRKKLSDYGLQLQEKQKLKFMYGITEKQFRKYFKEAKKL 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490367278   83 KGNTGENLLTLLEGRLDNVVYRMGFGATRAEARQMVSHKAIMVNGRVVNIASYQVSPNDVVSVREKSKKQSRIKAALELA 162
Cdd:TIGR01017  77 KGNTGENLLRLLESRLDNVVYRLGFAPTRFAARQLVSHGHILVNGKKVDIPSYQVRPGDIISIKEKSKKIPLVKENLETN 156

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 490367278  163 EQREKPTWLEVDAAKMEGVFKRIPERTDLSADINEHLIVELYSK 206
Cdd:TIGR01017 157 GQRNIPSWLEVDKKTLEGKVLRVPERSQLPLPINESLVVEYYSR 200
rps4 CHL00113
ribosomal protein S4; Reviewed
 1-205 7.67e-62

ribosomal protein S4; Reviewed


Pssm-ID: 177038 [Multi-domain]  Cd Length: 201  Bit Score: 191.20  E-value: 7.67e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490367278   1 MARYLGPKLKLSRREGTdlflksgVRAIDTKcklEQAPGQHGARKPR---LSDYGVQLREKQKVRRIYGVLERQFRNYYK 77
Cdd:CHL00113   1 MSRYRGPRLKIIRRLGA-------LPGLTSK---TPRPGSDLRNQSRsgkKSQYRIRLEEKQKLRFNYGLTERQLLKYVR 70

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490367278  78 EATRLKGNTGENLLTLLEGRLDNVVYRMGFGATRAEARQMVSHKAIMVNGRVVNIASYQVSPNDVVSVREKSKKQSRIKA 157
Cdd:CHL00113  71 IARKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPAARQLVNHGHILVNGRIVDIPSYRCKPKDIITVKDKQKSKNLIQN 150

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 490367278 158 ALELAEQREKPTWLEVDAAKMEGVFKRIPERTDLSADINEHLIVELYS 205
Cdd:CHL00113 151 NLESSPREELPNHLTLDKLQYKGLVNQIIDRKWVGLKINELLVVEYYS 198
Ribosomal_S4 pfam00163
Ribosomal protein S4/S9 N-terminal domain; This family includes small ribosomal subunit S9 ...
 3-95 9.50e-35

Ribosomal protein S4/S9 N-terminal domain; This family includes small ribosomal subunit S9 from prokaryotes and S16 from metazoans. This domain is predicted to bind to ribosomal RNA. This domain is composed of four helices in the known structure. However the domain is discontinuous in sequence and the alignment for this family contains only the first three helices.


Pssm-ID: 459696  Cd Length: 96  Bit Score: 118.42  E-value: 9.50e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490367278    3 RYLGPKLKLSRREGTDLFLKsGVRAIDTKCKLE-----QAPGQHGARKpRLSDYGVQLREKQKVRRIYGVLERQFRNYYK 77
Cdd:pfam00163   1 RYKGPEQKLLRRVGFKLWKK-GRCHRELKVAQNrreypKYPGQHGKIR-KLSEYLLQLREKQKVRRKYGLLEKQLRKLYD 78

                          90
                  ....*....|....*...
gi 490367278   78 EATRLKGNTGENLLTLLE 95
Cdd:pfam00163  79 MGLKLKGVTGENLLQLLE 96
S4 cd00165
S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, ...
 97-156 3.40e-18

S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.


Pssm-ID: 238095 [Multi-domain]  Cd Length: 70  Bit Score: 74.98  E-value: 3.40e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 490367278  97 RLDNVVYRMGFGATRAEARQMVSHKAIMVNGRVVNIASYQVSPNDVVSVREKSKKQSRIK 156
Cdd:cd00165    2 RLDKILARLGLAPSRSEARQLIKHGHVLVNGKVVTKPSYKVKPGDVIEVDGKSIEEDIVY 61
S4 smart00363
S4 RNA-binding domain;
97-151 1.55e-15

S4 RNA-binding domain;


Pssm-ID: 214638 [Multi-domain]  Cd Length: 60  Bit Score: 68.00  E-value: 1.55e-15
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 490367278    97 RLDNVVYRMGFGATRAEARQMVSHKAIMVNGRVVNIASYQVSPNDVVSVREKSKK 151
Cdd:smart00363   2 RLDKFLARLGLAPSRSQARRLIEQGRVKVNGKKVTKPSYIVKPGDVISVRGKELK 56
S4 pfam01479
S4 domain; The S4 domain is a small domain consisting of 60-65 amino acid residues that was ...
 97-143 8.54e-15

S4 domain; The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation. The S4 domain probably mediates binding to RNA.


Pssm-ID: 396182 [Multi-domain]  Cd Length: 48  Bit Score: 65.59  E-value: 8.54e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 490367278   97 RLDNVVYRMGFGATRAEARQMVSHKAIMVNGRVVNIASYQVSPNDVV 143
Cdd:pfam01479   2 RLDKVLARLGLASSRSQARQLIEHGRVLVNGKVVKDPSYRVKPGDEI 48
rps4p PRK04051
30S ribosomal protein S4P; Validated
 93-138 5.92e-09

30S ribosomal protein S4P; Validated


Pssm-ID: 179730 [Multi-domain]  Cd Length: 177  Bit Score: 53.34  E-value: 5.92e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 490367278  93 LLEGRLDNVVYRMGFGATRAEARQMVSHKAIMVNGRVVNIASYQVS 138
Cdd:PRK04051 100 ILERRLQTIVYRKGLARTPKQARQFIVHGHIAVNGRRVTSPSYLVS 145
YqxC COG1189
Predicted rRNA methylase YqxC, contains S4 and FtsJ domains [Translation, ribosomal structure ...
 97-162 3.49e-04

Predicted rRNA methylase YqxC, contains S4 and FtsJ domains [Translation, ribosomal structure and biogenesis];


Pssm-ID: 440802 [Multi-domain]  Cd Length: 248  Bit Score: 40.04  E-value: 3.49e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 490367278  97 RLDNVVYRMGFGATRAEARQMVSHKAIMVNGRVVNIASYQVSPNDVVSVREKSKKQ-SRikAALELA 162
Cdd:COG1189    2 RLDVLLVERGLAESREKAQRLIMAGRVLVNGQVVDKPGTKVPEDAEIEVKGEELPYvSR--GGLKLE 66
PTZ00155 PTZ00155
40S ribosomal protein S9; Provisional
 93-137 7.85e-03

40S ribosomal protein S9; Provisional


Pssm-ID: 185484 [Multi-domain]  Cd Length: 181  Bit Score: 35.83  E-value: 7.85e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 490367278  93 LLEGRLDNVVYRMGFGATRAEARQMVSHKAIMVNGRVVNIASYQV 137
Cdd:PTZ00155 104 LLERRLQTKVFKLGLAKSIHHARVLIRQRHIRVGKQIVDIPSFLV 148
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH