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Conserved domains on  [gi|490380362|ref|WP_004259881|]
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MULTISPECIES: Rpn family recombination-promoting nuclease/putative transposase [Providencia]

Protein Classification

Rpn family recombination-promoting nuclease/putative transposase( domain architecture ID 11475177)

Rpn family recombination-promoting nuclease/putative transposase similar to Escherichia coli recombination-promoting nuclease RpnC which may be involved in RecA-independent DNA recombination

EC:  3.1.21.-|3.1.21.-
Gene Ontology:  GO:0006310|GO:0004536|GO:0003677|GO:0032196|GO:0015074|GO:0004803
PubMed:  28096446|20215432|11774877

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RpnC COG5464
Recombination-promoting DNA endonuclease RpnC/YadD [Replication, recombination and repair];
10-316 1.52e-99

Recombination-promoting DNA endonuclease RpnC/YadD [Replication, recombination and repair];


:

Pssm-ID: 444215 [Multi-domain]  Cd Length: 301  Bit Score: 294.95  E-value: 1.52e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490380362  10 HDAAFKRFMSNIdsARDFFEIHLPKHIKsLCDFTTLKLTNSSFIDKQLRSRLSDVLYSVQTSHGTGYIYLLVEHQSTPDK 89
Cdd:COG5464    5 HDALFKQLFSNF--PRDFFELLLPEELE-LIDLSTLELLSTEFVDDKLRAFRSDGLFSPKTKDGPGYIYLLIEHQSQPDK 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490380362  90 LMAWRLMHYAFLAMNQHMQQGstvlpLVVPILFYHGTRSPYPYTQLWTDCFPQPKLANTLyTQSFPLVDITVIDDNELVN 169
Cdd:COG5464   82 LMPFRLLRYIVLYLRQYLKKG-----PVIPVVIYHGRSSPWPVPTRYLDLFADPELAEEL-LFSYRLIDLYLIEDEEILQ 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490380362 170 HRKIAVMELAMKHKRlRDEFHHVLPLLAQALNQ--HYNSDNDVVTIINYLFSALdSTDFEKF-IYTLEAQTEKHKETIMN 246
Cdd:COG5464  156 HPLGALLPLVKILDR-TDALEELLRLLARLLQEieDEAQREQLEALIEYIAVKF-QPDLEREeIEAMLRLIDELKETIMT 233

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490380362 247 IAQRLHNKGHQEGLLEGLQkgkqeglqkGLQEGVQKTKTTLARNLL--INGVSPEIIMKSTGLSRDELTSLK 316
Cdd:COG5464  234 IYQELLQEGREEGRQEGRE---------GRQEGRQEGKLELALRLLkrRFGLPLELIARITGLSLEQLEALG 296
 
Name Accession Description Interval E-value
RpnC COG5464
Recombination-promoting DNA endonuclease RpnC/YadD [Replication, recombination and repair];
10-316 1.52e-99

Recombination-promoting DNA endonuclease RpnC/YadD [Replication, recombination and repair];


Pssm-ID: 444215 [Multi-domain]  Cd Length: 301  Bit Score: 294.95  E-value: 1.52e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490380362  10 HDAAFKRFMSNIdsARDFFEIHLPKHIKsLCDFTTLKLTNSSFIDKQLRSRLSDVLYSVQTSHGTGYIYLLVEHQSTPDK 89
Cdd:COG5464    5 HDALFKQLFSNF--PRDFFELLLPEELE-LIDLSTLELLSTEFVDDKLRAFRSDGLFSPKTKDGPGYIYLLIEHQSQPDK 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490380362  90 LMAWRLMHYAFLAMNQHMQQGstvlpLVVPILFYHGTRSPYPYTQLWTDCFPQPKLANTLyTQSFPLVDITVIDDNELVN 169
Cdd:COG5464   82 LMPFRLLRYIVLYLRQYLKKG-----PVIPVVIYHGRSSPWPVPTRYLDLFADPELAEEL-LFSYRLIDLYLIEDEEILQ 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490380362 170 HRKIAVMELAMKHKRlRDEFHHVLPLLAQALNQ--HYNSDNDVVTIINYLFSALdSTDFEKF-IYTLEAQTEKHKETIMN 246
Cdd:COG5464  156 HPLGALLPLVKILDR-TDALEELLRLLARLLQEieDEAQREQLEALIEYIAVKF-QPDLEREeIEAMLRLIDELKETIMT 233

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490380362 247 IAQRLHNKGHQEGLLEGLQkgkqeglqkGLQEGVQKTKTTLARNLL--INGVSPEIIMKSTGLSRDELTSLK 316
Cdd:COG5464  234 IYQELLQEGREEGRQEGRE---------GRQEGRQEGKLELALRLLkrRFGLPLELIARITGLSLEQLEALG 296
PRK09956 PRK09956
ISNCY family transposase;
1-314 2.60e-87

ISNCY family transposase;


Pssm-ID: 182167 [Multi-domain]  Cd Length: 308  Bit Score: 264.29  E-value: 2.60e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490380362   1 MKRKNISAVHDAAFKRFMSNIDSARDFFEIHLPKHIKSLCDFTTLKLTNSSFIDKQLRSRLSDVLYSVQTSHGTGYIYLL 80
Cdd:PRK09956   1 MTESTTSSPHDAVFKTFMFTPETARDFLEIHLPEPLRKLCNLQTLRLEPTSFIEKSLRAYYSDVLWSVETSDGDGYIYCV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490380362  81 VEHQSTPDKLMAWRLMHYAFLAMNQHMQQGSTVLPLVVPILFYHGTRSPYPYTQLWTDCFPQPKLANTLYTQSFPLVDIT 160
Cdd:PRK09956  81 IEHQSSAEKNMAFRLMRYATAAMQRHLDKGYDRVPLVVPLLFYHGETSPYPYSLNWLDEFDDPQLARQLYTEAFPLVDIT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490380362 161 VIDDNELVNHRKIAVMELAMKHKRLRDEFHHVlPLLAQALNQHYNSDNDVVTIINYLFSALDSTDFEKFIYTLEAQTEKH 240
Cdd:PRK09956 161 IVPDDEIMQHRRIALLELIQKHIRDRDLIGMV-DRITTLLVRGFTNDSQLQTLFNYLLQCGDTSRFTRFIQEIAERSPLQ 239

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 490380362 241 KETIMNIAQRLHNKGHQEGLleglqkgkQEGLQKGLQEGVQKTKTTLARNLLINGVSPEIIMKSTGLSRDELTS 314
Cdd:PRK09956 240 KERLMTIAERLRQEGHQIGW--------QEGKLEGLQEGMHEQAIKIALRMLEQGFDRDQVLAATQLSEADLAA 305
Transposase_31 pfam04754
Putative transposase, YhgA-like; This family of putative transposases includes the YhgA ...
 10-202 5.17e-81

Putative transposase, YhgA-like; This family of putative transposases includes the YhgA sequence from Escherichia coli and several prokaryotic homologs.


Pssm-ID: 428107  Cd Length: 202  Bit Score: 244.04  E-value: 5.17e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490380362   10 HDAAFKRFMSNIDSARDFFEIHLPKHIKSLCDFTTLKLTNSSFIDKQLRSRLSDVLYSVQTSHGTGYIYLLVEHQSTPDK 89
Cdd:pfam04754   3 HDAVFKQFLSDPETARDFLDIHLPAELLALCDLETLKLESGSFIEDNLRESYSDLLFSVKTKGGEGYIYVLIEHQSYPDK 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490380362   90 LMAWRLMHYAFLAMNQHMQQGSTVLPLVVPILFYHGTRSpYPYTQLWTDCFPQPKLANTLYTQSFPLVDITVIDDNELVN 169
Cdd:pfam04754  83 LMAFRLLRYAIAIMQRHLDAGHKELPLVIPIVFYHGERS-WPYSLSWLDLFDDPELAKYLYSFEFPLVDLTVIPDDEIMQ 161

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 490380362  170 HRKIAVMELAMKHKRLRD--EFHHVLPLLAQALNQ 202
Cdd:pfam04754 162 HRRLALLELLQKHIRQRDlaELLDQLVELLQLGYT 196
T_den_put_tspse TIGR01784
conserved hypothetical protein (putative transposase or invertase); Several lines of evidence ...
 10-315 5.88e-39

conserved hypothetical protein (putative transposase or invertase); Several lines of evidence suggest that members of this family (loaded as a fragment mode model to find part-length matches) are associated with transposition, inversion, or recombination. Members are found in small numbers of genomes, but in large copy numbers in many of those species, including over 30 full length and fragmentary members in Treponema denticola. The strongest similarities are usually within rather than between species. PSI-BLAST shows similarity to proteins designated as possible transposases, DNA invertases (resolvases), and recombinases. In the oral pathogenic spirochete Treponema denticola, full-length members are often found near transporters or other membrane proteins. This family includes members of the putative transposase family pfam04754.


Pssm-ID: 273806 [Multi-domain]  Cd Length: 270  Bit Score: 138.30  E-value: 5.88e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490380362   10 HDAAFKRFMSniDSARDFFEIHLPKHIKSLCDFTTLKLTNSSFIDKQLRSRLSDVLYSVQTShgtGYIYLLVEHQSTPDK 89
Cdd:TIGR01784   2 HDFLFKQLFG--DENEDFLIIFLNAVLGELLDIKTLELSSQSFVEENLEDKFSDLDILATDS---EGLHYNIEHQVAPDK 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490380362   90 LMAWRLMHYAFlAMNQHMQQGSTVLPLVVPILFYHgtrspypytQLWTDCFPQPKLANTLYTQSFPlVDITVIDDNElvn 169
Cdd:TIGR01784  77 DMAKRMLYYWS-AMYQSQLKQGDKYVVLAPTVFIN---------ILPFDLFGDEERVHNIYLSEEE-DSIFELTDLQ--- 142

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490380362  170 HRKIAVMELAMKHKRLRDefhhVLPLLAQALNQHYNSDNDVVTIINYLFsaldstdFEKFIYTLEAQTEKHKETIMNIAQ 249
Cdd:TIGR01784 143 ELHLLELPKLKAIIDERL----LDVLDRWLLLLKGKDNQSVNLIFLQIP-------FIQKAEEEIKTLLLSSKELELYEQ 211

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 490380362  250 RlhnkghqEGLLEGLQKGKQEGLQKGLQEGVQKTKTTLARNLLINGVSPEIIMKSTGLSRDELTSL 315
Cdd:TIGR01784 212 R-------EKYMTDAISAEEEGKEEGIEEGILEAKLETAKKLLKNGLTLEQVAEATGLSVEELEEI 270
 
Name Accession Description Interval E-value
RpnC COG5464
Recombination-promoting DNA endonuclease RpnC/YadD [Replication, recombination and repair];
10-316 1.52e-99

Recombination-promoting DNA endonuclease RpnC/YadD [Replication, recombination and repair];


Pssm-ID: 444215 [Multi-domain]  Cd Length: 301  Bit Score: 294.95  E-value: 1.52e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490380362  10 HDAAFKRFMSNIdsARDFFEIHLPKHIKsLCDFTTLKLTNSSFIDKQLRSRLSDVLYSVQTSHGTGYIYLLVEHQSTPDK 89
Cdd:COG5464    5 HDALFKQLFSNF--PRDFFELLLPEELE-LIDLSTLELLSTEFVDDKLRAFRSDGLFSPKTKDGPGYIYLLIEHQSQPDK 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490380362  90 LMAWRLMHYAFLAMNQHMQQGstvlpLVVPILFYHGTRSPYPYTQLWTDCFPQPKLANTLyTQSFPLVDITVIDDNELVN 169
Cdd:COG5464   82 LMPFRLLRYIVLYLRQYLKKG-----PVIPVVIYHGRSSPWPVPTRYLDLFADPELAEEL-LFSYRLIDLYLIEDEEILQ 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490380362 170 HRKIAVMELAMKHKRlRDEFHHVLPLLAQALNQ--HYNSDNDVVTIINYLFSALdSTDFEKF-IYTLEAQTEKHKETIMN 246
Cdd:COG5464  156 HPLGALLPLVKILDR-TDALEELLRLLARLLQEieDEAQREQLEALIEYIAVKF-QPDLEREeIEAMLRLIDELKETIMT 233

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490380362 247 IAQRLHNKGHQEGLLEGLQkgkqeglqkGLQEGVQKTKTTLARNLL--INGVSPEIIMKSTGLSRDELTSLK 316
Cdd:COG5464  234 IYQELLQEGREEGRQEGRE---------GRQEGRQEGKLELALRLLkrRFGLPLELIARITGLSLEQLEALG 296
PRK09956 PRK09956
ISNCY family transposase;
1-314 2.60e-87

ISNCY family transposase;


Pssm-ID: 182167 [Multi-domain]  Cd Length: 308  Bit Score: 264.29  E-value: 2.60e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490380362   1 MKRKNISAVHDAAFKRFMSNIDSARDFFEIHLPKHIKSLCDFTTLKLTNSSFIDKQLRSRLSDVLYSVQTSHGTGYIYLL 80
Cdd:PRK09956   1 MTESTTSSPHDAVFKTFMFTPETARDFLEIHLPEPLRKLCNLQTLRLEPTSFIEKSLRAYYSDVLWSVETSDGDGYIYCV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490380362  81 VEHQSTPDKLMAWRLMHYAFLAMNQHMQQGSTVLPLVVPILFYHGTRSPYPYTQLWTDCFPQPKLANTLYTQSFPLVDIT 160
Cdd:PRK09956  81 IEHQSSAEKNMAFRLMRYATAAMQRHLDKGYDRVPLVVPLLFYHGETSPYPYSLNWLDEFDDPQLARQLYTEAFPLVDIT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490380362 161 VIDDNELVNHRKIAVMELAMKHKRLRDEFHHVlPLLAQALNQHYNSDNDVVTIINYLFSALDSTDFEKFIYTLEAQTEKH 240
Cdd:PRK09956 161 IVPDDEIMQHRRIALLELIQKHIRDRDLIGMV-DRITTLLVRGFTNDSQLQTLFNYLLQCGDTSRFTRFIQEIAERSPLQ 239

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 490380362 241 KETIMNIAQRLHNKGHQEGLleglqkgkQEGLQKGLQEGVQKTKTTLARNLLINGVSPEIIMKSTGLSRDELTS 314
Cdd:PRK09956 240 KERLMTIAERLRQEGHQIGW--------QEGKLEGLQEGMHEQAIKIALRMLEQGFDRDQVLAATQLSEADLAA 305
PRK09857 PRK09857
recombination-promoting nuclease RpnA;
1-315 1.19e-84

recombination-promoting nuclease RpnA;


Pssm-ID: 182117 [Multi-domain]  Cd Length: 292  Bit Score: 256.89  E-value: 1.19e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490380362   1 MKRKNISAVHDAAFKRFMSNIDSARDFFEIHLPKHIKSLCDFTTLKLTNSSFIDKQLRSRLSDVLYSVQTSHGTGYIYLL 80
Cdd:PRK09857   1 MSKKQSSTPHDALFKLFLRQPETARDFLAFHLPAPIHALCDMKTLKLESSSFIDDDLRESYSDVLWSVKTEQGPGYIYCL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490380362  81 VEHQSTPDKLMAWRLMHYAFLAMNQHMQQGSTVLPLVVPILFYHGTRSPYPYTQLWTDCFPQPKLANTLYTQSFPLVDIT 160
Cdd:PRK09857  81 IEHQSTSNKLIAFRMMRYAIAAMQNHLDAGYKTLPMVVPLLFYHGIESPYPYSLCWLDCFADPKLARQLYASAFPLIDVT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490380362 161 VIDDNELVNHRKIAVMELAMKHKRLRDeFHHVLPLLAQALNQHYNSDNDVVTIINYLFSALDSTDFEKFIYTLEAQTEKH 240
Cdd:PRK09857 161 VMPDDEIMQHRRMALLELIQKHIRQRD-LMGLVEQMACLLSSGYANDRQIKGLFNYILQTGDAVRFNDFIDGVAERSPKH 239

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 490380362 241 KETIMNIAQRLHnkghqeglleglqkgkqeglqkglQEGVQKTKTTLARNLLINGVSPEIIMKSTGLSRDELTSL 315
Cdd:PRK09857 240 KESLMTIAERLR------------------------QEGEQSKALHIAKIMLESGVPLADIMRFTGLSEEELAAA 290
Transposase_31 pfam04754
Putative transposase, YhgA-like; This family of putative transposases includes the YhgA ...
 10-202 5.17e-81

Putative transposase, YhgA-like; This family of putative transposases includes the YhgA sequence from Escherichia coli and several prokaryotic homologs.


Pssm-ID: 428107  Cd Length: 202  Bit Score: 244.04  E-value: 5.17e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490380362   10 HDAAFKRFMSNIDSARDFFEIHLPKHIKSLCDFTTLKLTNSSFIDKQLRSRLSDVLYSVQTSHGTGYIYLLVEHQSTPDK 89
Cdd:pfam04754   3 HDAVFKQFLSDPETARDFLDIHLPAELLALCDLETLKLESGSFIEDNLRESYSDLLFSVKTKGGEGYIYVLIEHQSYPDK 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490380362   90 LMAWRLMHYAFLAMNQHMQQGSTVLPLVVPILFYHGTRSpYPYTQLWTDCFPQPKLANTLYTQSFPLVDITVIDDNELVN 169
Cdd:pfam04754  83 LMAFRLLRYAIAIMQRHLDAGHKELPLVIPIVFYHGERS-WPYSLSWLDLFDDPELAKYLYSFEFPLVDLTVIPDDEIMQ 161

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 490380362  170 HRKIAVMELAMKHKRLRD--EFHHVLPLLAQALNQ 202
Cdd:pfam04754 162 HRRLALLELLQKHIRQRDlaELLDQLVELLQLGYT 196
T_den_put_tspse TIGR01784
conserved hypothetical protein (putative transposase or invertase); Several lines of evidence ...
 10-315 5.88e-39

conserved hypothetical protein (putative transposase or invertase); Several lines of evidence suggest that members of this family (loaded as a fragment mode model to find part-length matches) are associated with transposition, inversion, or recombination. Members are found in small numbers of genomes, but in large copy numbers in many of those species, including over 30 full length and fragmentary members in Treponema denticola. The strongest similarities are usually within rather than between species. PSI-BLAST shows similarity to proteins designated as possible transposases, DNA invertases (resolvases), and recombinases. In the oral pathogenic spirochete Treponema denticola, full-length members are often found near transporters or other membrane proteins. This family includes members of the putative transposase family pfam04754.


Pssm-ID: 273806 [Multi-domain]  Cd Length: 270  Bit Score: 138.30  E-value: 5.88e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490380362   10 HDAAFKRFMSniDSARDFFEIHLPKHIKSLCDFTTLKLTNSSFIDKQLRSRLSDVLYSVQTShgtGYIYLLVEHQSTPDK 89
Cdd:TIGR01784   2 HDFLFKQLFG--DENEDFLIIFLNAVLGELLDIKTLELSSQSFVEENLEDKFSDLDILATDS---EGLHYNIEHQVAPDK 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490380362   90 LMAWRLMHYAFlAMNQHMQQGSTVLPLVVPILFYHgtrspypytQLWTDCFPQPKLANTLYTQSFPlVDITVIDDNElvn 169
Cdd:TIGR01784  77 DMAKRMLYYWS-AMYQSQLKQGDKYVVLAPTVFIN---------ILPFDLFGDEERVHNIYLSEEE-DSIFELTDLQ--- 142

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490380362  170 HRKIAVMELAMKHKRLRDefhhVLPLLAQALNQHYNSDNDVVTIINYLFsaldstdFEKFIYTLEAQTEKHKETIMNIAQ 249
Cdd:TIGR01784 143 ELHLLELPKLKAIIDERL----LDVLDRWLLLLKGKDNQSVNLIFLQIP-------FIQKAEEEIKTLLLSSKELELYEQ 211

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 490380362  250 RlhnkghqEGLLEGLQKGKQEGLQKGLQEGVQKTKTTLARNLLINGVSPEIIMKSTGLSRDELTSL 315
Cdd:TIGR01784 212 R-------EKYMTDAISAEEEGKEEGIEEGILEAKLETAKKLLKNGLTLEQVAEATGLSVEELEEI 270
fliH PRK05687
flagellar assembly protein FliH;
252-281 2.92e-06

flagellar assembly protein FliH;


Pssm-ID: 235562 [Multi-domain]  Cd Length: 246  Bit Score: 47.62  E-value: 2.92e-06
                         10        20        30
                 ....*....|....*....|....*....|
gi 490380362 252 HNKGHQEGLLEGLQKGKQEGLQKGLQEGVQ 281
Cdd:PRK05687  73 FAAGKAEGRAEGYEAGYQEGLAQGLEQGLA 102
Yae1_N pfam09811
Essential protein Yae1, N terminal; Members of this family are found in the N terminal region ...
 255-282 1.67e-05

Essential protein Yae1, N terminal; Members of this family are found in the N terminal region of the essential protein Yae1. Their exact function has not, as yet, been determined. The family DUF1715, pfam08215 has now been merged into this family.


Pssm-ID: 430844 [Multi-domain]  Cd Length: 39  Bit Score: 41.25  E-value: 1.67e-05
                          10        20
                  ....*....|....*....|....*...
gi 490380362  255 GHQEGLLEGLQKGKQEGLQKGLQEGVQK 282
Cdd:pfam09811   1 GYREGISEGKEEGLQEGFDEGFQEGAQL 28
fliH PRK05687
flagellar assembly protein FliH;
234-282 9.29e-05

flagellar assembly protein FliH;


Pssm-ID: 235562 [Multi-domain]  Cd Length: 246  Bit Score: 43.00  E-value: 9.29e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 490380362 234 EAQTEkhkETIMNIAQRLHNKGHQEGLLEGLQKGKQEGLQKGLQEGVQK 282
Cdd:PRK05687  54 APLTE---EELEAIRQQAHEEGFAAGKAEGRAEGYEAGYQEGLAQGLEQ 99
fliH PRK05687
flagellar assembly protein FliH;
249-285 1.54e-04

flagellar assembly protein FliH;


Pssm-ID: 235562 [Multi-domain]  Cd Length: 246  Bit Score: 42.61  E-value: 1.54e-04
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 490380362 249 QRLHNKGHQEGLLEGLQKGKQEGLQKGLQEGVQKTKT 285
Cdd:PRK05687  62 EAIRQQAHEEGFAAGKAEGRAEGYEAGYQEGLAQGLE 98
fliH PRK13386
flagellar assembly protein H; Provisional
 253-282 2.47e-04

flagellar assembly protein H; Provisional


Pssm-ID: 237372 [Multi-domain]  Cd Length: 236  Bit Score: 41.93  E-value: 2.47e-04
                         10        20        30
                 ....*....|....*....|....*....|
gi 490380362 253 NKGHQEGLLEGLQKGKQEGLQKGLQEGVQK 282
Cdd:PRK13386  53 QQGFDQGLEEGEEEGRQEGHAAGFAQGRQK 82
Yae1_N pfam09811
Essential protein Yae1, N terminal; Members of this family are found in the N terminal region ...
 255-281 4.49e-04

Essential protein Yae1, N terminal; Members of this family are found in the N terminal region of the essential protein Yae1. Their exact function has not, as yet, been determined. The family DUF1715, pfam08215 has now been merged into this family.


Pssm-ID: 430844 [Multi-domain]  Cd Length: 39  Bit Score: 37.02  E-value: 4.49e-04
                          10        20
                  ....*....|....*....|....*..
gi 490380362  255 GHQEGLLEGLQKGKQEGLQKGLQEGVQ 281
Cdd:pfam09811   5 GISEGKEEGLQEGFDEGFQEGAQLGLE 31
fliH PRK13386
flagellar assembly protein H; Provisional
 249-284 1.34e-03

flagellar assembly protein H; Provisional


Pssm-ID: 237372 [Multi-domain]  Cd Length: 236  Bit Score: 39.62  E-value: 1.34e-03
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 490380362 249 QRLHNKGHQEGLLEGLQKGKQEGLQKGLQEGVQKTK 284
Cdd:PRK13386  53 QQGFDQGLEEGEEEGRQEGHAAGFAQGRQKGRIEGR 88
FliH COG1317
Flagellar biosynthesis/type III secretory pathway protein FliH [Cell motility, Intracellular ...
 245-278 2.02e-03

Flagellar biosynthesis/type III secretory pathway protein FliH [Cell motility, Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440928 [Multi-domain]  Cd Length: 172  Bit Score: 38.37  E-value: 2.02e-03
                         10        20        30
                 ....*....|....*....|....*....|....
gi 490380362 245 MNIAQRLHNKGHQEGLLEGLQKGKQEGLQKGLQE 278
Cdd:COG1317    1 MEELEALREEAREEGYAEGYEEGLEEGRAEAEAE 34
fliH PRK13386
flagellar assembly protein H; Provisional
 246-281 3.15e-03

flagellar assembly protein H; Provisional


Pssm-ID: 237372 [Multi-domain]  Cd Length: 236  Bit Score: 38.46  E-value: 3.15e-03
                         10        20        30
                 ....*....|....*....|....*....|....*.
gi 490380362 246 NIAQRLHnKGHQEGLLEGLQKGKQEGLQKGLQEGVQ 281
Cdd:PRK13386  39 DYQQQLM-AGFQEGIQQGFDQGLEEGEEEGRQEGHA 73
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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