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Conserved domains on  [gi|490427191|ref|WP_004299352|]
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MULTISPECIES: tetratricopeptide repeat protein [Bacteroides]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 11419012)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

CATH:  1.25.40.10
Gene Ontology:  GO:0005515
PubMed:  10517866|30708253
SCOP:  3001345

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
24-230 7.52e-17

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 76.58  E-value: 7.52e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490427191  24 LFDEAVSLDNQKKYHEAIVVWNKLIQNDPTYLPAYINRGADKFALKQYSEAIKDYCYVIRQDSTYIMAWLNRGNANLELN 103
Cdd:COG0457   11 YNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALG 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490427191 104 NYQSAIDDFNAAERikqevygcaqvifydkIDPKDValeEICLQRGIAYWYVDSINKAYSDLNYCIDQKYEVVCSYFWRA 183
Cdd:COG0457   91 RYEEALEDYDKALE----------------LDPDDA---EALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLG 151

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 490427191 184 YVYWKAGKEKEAYNDFMTVILQGRADDDYVIQAQQNLKLLDKHSILL 230
Cdd:COG0457  152 IALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLA 198
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
24-230 7.52e-17

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 76.58  E-value: 7.52e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490427191  24 LFDEAVSLDNQKKYHEAIVVWNKLIQNDPTYLPAYINRGADKFALKQYSEAIKDYCYVIRQDSTYIMAWLNRGNANLELN 103
Cdd:COG0457   11 YNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALG 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490427191 104 NYQSAIDDFNAAERikqevygcaqvifydkIDPKDValeEICLQRGIAYWYVDSINKAYSDLNYCIDQKYEVVCSYFWRA 183
Cdd:COG0457   91 RYEEALEDYDKALE----------------LDPDDA---EALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLG 151

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 490427191 184 YVYWKAGKEKEAYNDFMTVILQGRADDDYVIQAQQNLKLLDKHSILL 230
Cdd:COG0457  152 IALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLA 198
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 23-114 5.41e-07

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 49.60  E-value: 5.41e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490427191   23 KLFDEAVSLDNQKKYHEAIVVWNKLI--QNDPTYlpaYINRGADKFALKQYSEAIKDYCYVIRQDSTYIMAWLNRGNANL 100
Cdd:TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIecKPDPVY---YSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205

                          90
                  ....*....|....
gi 490427191  101 ELNNYQSAIDDFNA 114
Cdd:TIGR00990 206 GLGKYADALLDLTA 219
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
24-230 7.52e-17

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 76.58  E-value: 7.52e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490427191  24 LFDEAVSLDNQKKYHEAIVVWNKLIQNDPTYLPAYINRGADKFALKQYSEAIKDYCYVIRQDSTYIMAWLNRGNANLELN 103
Cdd:COG0457   11 YNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALG 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490427191 104 NYQSAIDDFNAAERikqevygcaqvifydkIDPKDValeEICLQRGIAYWYVDSINKAYSDLNYCIDQKYEVVCSYFWRA 183
Cdd:COG0457   91 RYEEALEDYDKALE----------------LDPDDA---EALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLG 151

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 490427191 184 YVYWKAGKEKEAYNDFMTVILQGRADDDYVIQAQQNLKLLDKHSILL 230
Cdd:COG0457  152 IALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLA 198
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
24-115 3.95e-14

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 68.79  E-value: 3.95e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490427191  24 LFDEAVSLDNQKKYHEAIVVWNKLIQNDPTYLPAYINRGADKFALKQYSEAIKDYCYVIRQDSTYIMAWLNRGNANLELN 103
Cdd:COG4785   76 YYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLG 155

                         90
                 ....*....|..
gi 490427191 104 NYQSAIDDFNAA 115
Cdd:COG4785  156 RYELAIADLEKA 167
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
49-193 2.17e-12

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 64.17  E-value: 2.17e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490427191  49 QNDPTYLPAYINRGADKFALKQYSEAIKDYCYVIRQDSTYIMAWLNRGNANLELNNYQSAIDDFNAAERikqevygcaqv 128
Cdd:COG4785   67 LALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALE----------- 135

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 490427191 129 ifydkIDPKDValeEICLQRGIAYWYVDSINKAYSDLNYCIDQKYEVVCSYFWRAYVYWKAGKEK 193
Cdd:COG4785  136 -----LDPDYA---YAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLDPEK 192
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 24-119 2.19e-11

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 62.70  E-value: 2.19e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490427191  24 LFDEAVSLDNQKKYHEAIVVWNKLIQNDPTYLPAYINRGADKFALKQYSEAIKDYCYVIRQDSTYIMAWLNRGNANLELN 103
Cdd:COG3914  115 LFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLG 194

                         90
                 ....*....|....*.
gi 490427191 104 NYQSAIDDFNAAERIK 119
Cdd:COG3914  195 RLEEAIAAYRRALELD 210
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
48-199 3.65e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 60.79  E-value: 3.65e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490427191  48 IQNDPTYLPAYINRGADKFALKQYSEAIKDYCYVIRQDSTYIMAWLNRGNANLELNNYQSAIDDFNAAErikqevygcaq 127
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQAL----------- 69

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 490427191 128 vifydKIDPKDValeEICLQRGIAYWYVDSINKAYSDLNYCIDQKYEVVCSYFWRAYVYWKAGKEKEAYNDF 199
Cdd:COG0457   70 -----ELDPDDA---EALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAY 133
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 22-119 2.45e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 56.54  E-value: 2.45e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490427191  22 NKLFDEAVSLDNQKKYHEAIVVWNKLIQNDPTYLPAYINRGADKFALKQYSEAIKDYCYVIRQDSTYIMAWLNRGNANLE 101
Cdd:COG3914   79 ALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRR 158

                         90
                 ....*....|....*...
gi 490427191 102 LNNYQSAIDDFNAAERIK 119
Cdd:COG3914  159 LGRLEEAIAALRRALELD 176
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 24-121 2.66e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 54.04  E-value: 2.66e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490427191  24 LFDEAVSLDNQKKYHEAIVVWNKLIQNDPTYLPAYINRGADKFALKQYSEAIKDYCYVIRQDSTYIMAWLNRGNANLELN 103
Cdd:COG4783    7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG 86

                         90
                 ....*....|....*...
gi 490427191 104 NYQSAIDDFNAAERIKQE 121
Cdd:COG4783   87 DYDEALALLEKALKLDPE 104
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 28-121 6.24e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 52.89  E-value: 6.24e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490427191  28 AVSLDNQKKYHEAIVVWNKLIQNDPTYLPAYINRGADKFALKQYSEAIKDYCYVIRQDSTYIMAWLNRGNANLELNNYQS 107
Cdd:COG4783   45 GEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDE 124

                         90
                 ....*....|....
gi 490427191 108 AIDDFNAAERIKQE 121
Cdd:COG4783  125 AIAALEKALELDPD 138
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 34-122 4.09e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 49.34  E-value: 4.09e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490427191  34 QKKYHEAIVVWNKLIQNDPTYLPAYINRGADKFALKQYSEAIKDYCYVIRQDSTYIMAWLNRGNANLELNNYQSAIDDFN 113
Cdd:COG2956  157 QGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLR 236


                 ....*....
gi 490427191 114 AAERIKQEV 122
Cdd:COG2956  237 KALELDPSD 245
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 23-114 5.41e-07

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 49.60  E-value: 5.41e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490427191   23 KLFDEAVSLDNQKKYHEAIVVWNKLI--QNDPTYlpaYINRGADKFALKQYSEAIKDYCYVIRQDSTYIMAWLNRGNANL 100
Cdd:TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIecKPDPVY---YSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205

                          90
                  ....*....|....
gi 490427191  101 ELNNYQSAIDDFNA 114
Cdd:TIGR00990 206 GLGKYADALLDLTA 219
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
31-123 8.56e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 45.93  E-value: 8.56e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490427191  31 LDNQKKYHEAIVVWNKLIQNDPTYLPAYINRGADKFALKQYSEAIKdYCYVIRQDSTYIMAWLNRGNANLELNNYQSAID 110
Cdd:COG3063    2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80

                         90
                 ....*....|...
gi 490427191 111 DFNAAERIKQEVY 123
Cdd:COG3063   81 YLERALELDPSAL 93
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 29-115 8.61e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 47.26  E-value: 8.61e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490427191  29 VSLDNQKKYHEAIVVWNKLIQNDPTYLPAYINRGADKFALKQYSEAIKDYCYVIRQDSTYIMAWLNRGNANLELNNYQSA 108
Cdd:COG5010   62 NLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEA 141


                 ....*..
gi 490427191 109 IDDFNAA 115
Cdd:COG5010  142 KAALQRA 148
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 34-118 1.73e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 47.80  E-value: 1.73e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490427191  34 QKKYHEAIVVWNKLIQNDPTYLPAYINRGADKFALKQYSEAIKDYCYVIRQDSTYIMAWLNRGNANLELNNYQSAIDDFN 113
Cdd:COG2956  123 EGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALE 202


                 ....*
gi 490427191 114 AAERI 118
Cdd:COG2956  203 RALEQ 207
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 55-199 2.88e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 45.57  E-value: 2.88e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490427191  55 LPAYINRGADKFALKQYSEAIKDYCYVIRQDSTYIMAWLNRGNANLELNNYQSAIDDFNAAErikqevygcaqvifydKI 134
Cdd:COG4783    4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEAL----------------EL 67

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 490427191 135 DPKDValeEICLQRGIAYWYVDSINKAYSDLNYCIDQKYEVVCSYFWRAYVYWKAGKEKEAYNDF 199
Cdd:COG4783   68 DPDEP---EARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAAL 129
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 34-121 5.33e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 46.26  E-value: 5.33e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490427191  34 QKKYHEAIVVWNKLIQNDPTYLPAYINRGADKFALKQYSEAIKDYCYVIRQDSTYIMAWLNRGNANLELNNYQSAIDDFN 113
Cdd:COG2956   55 RGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLE 134


                 ....*...
gi 490427191 114 AAERIKQE 121
Cdd:COG2956  135 RLLKLGPE 142
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 28-95 1.50e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 45.37  E-value: 1.50e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 490427191  28 AVSLDNQKKYHEAIVVWNKLIQNDPTYLPAYINRGADKFALKQYSEAIKDYCYVIRQDSTYIMAWLNR 95
Cdd:COG3914  153 GEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 33-115 1.51e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 43.07  E-value: 1.51e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490427191  33 NQKKYHEAIVVWNKLIQNDPTYLPAYINRGADKFALKQYSEAIKDYCYVIRQDSTYIMAWLNRGNANLELNNYQSAIDDF 112
Cdd:COG4235   29 RLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAW 108


                 ...
gi 490427191 113 NAA 115
Cdd:COG4235  109 QKL 111
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 28-108 2.66e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 41.61  E-value: 2.66e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490427191   28 AVSLDNQKKYHEAIVVWNKLIQNDPTYLPAYINRGADKFALKQYSEAIKDYCYVIRQDSTYIMAWLNRGNANLELNNYQS 107
Cdd:TIGR02917 166 AQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEE 245


                  .
gi 490427191  108 A 108
Cdd:TIGR02917 246 A 246
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 33-112 3.96e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 38.82  E-value: 3.96e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490427191  33 NQKKYHEAIVVWNKLIQNDPT--YLP-AYINRGADKFALKQYSEAIKDYCYVIRQ--DSTYI-MAWLNRGNANLELNNYQ 106
Cdd:COG1729    5 KAGDYDEAIAAFKAFLKRYPNspLAPdALYWLGEAYYALGDYDEAAEAFEKLLKRypDSPKApDALLKLGLSYLELGDYD 84


                 ....*.
gi 490427191 107 SAIDDF 112
Cdd:COG1729   85 KARATL 90
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
28-115 4.33e-04

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 40.28  E-value: 4.33e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490427191  28 AVSLDNQKKYHEAIVVWNKLIQNDPTYLPAYINRGADKFALKQYSEAIKDYCYVIRQDSTYIMAWLNRGNANLELnNYQS 107
Cdd:COG4785  114 GLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKL-DPEK 192


                 ....*...
gi 490427191 108 AIDDFNAA 115
Cdd:COG4785  193 ALALLLED 200
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 67-121 1.07e-03

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 39.59  E-value: 1.07e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 490427191  67 ALKQYSEAIKDYCYVIRQDSTYIMAWLNRGNANLELNNYQSAIDDFNAAERIKQE 121
Cdd:COG3914   90 ALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPD 144
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
28-152 2.80e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 38.06  E-value: 2.80e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490427191  28 AVSLDNQKKYHEAIVVWNKLIQNDPTYLPAYINRGADKFALKQYSEAIKDY---CYVIRQDSTYIMAWLNRGNANLELNN 104
Cdd:COG0457  117 GLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLeklEAAALAALLAAALGEAALALAAAEVL 196

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 490427191 105 YQSAIDDFNAAERIKQEVYGCAQVIFYDKIDPKDVALEEICLQRGIAY 152
Cdd:COG0457  197 LALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYR 244
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 39-118 4.59e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 36.14  E-value: 4.59e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490427191  39 EAIVVWNKLIQNDPTYLPAYINRGADKFALKQYSEAIKDYCYVIRQDSTYIMAWLNRGNANLELNNYQSAIDDFNAAERI 118
Cdd:COG4235    1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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