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Conserved domains on  [gi|490519413|ref|WP_004384910|]
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MULTISPECIES: transcription modulator YdgT [Cronobacter]

Protein Classification

HHA domain-containing protein( domain architecture ID 10013506)

HHA domain-containing protein similar to hemolysin expression-modulating protein Hha may play a role in the regulation of gene expression in response to environmental factors

CATH:  1.20.1280.40
PubMed:  15458420
SCOP:  4002903

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10391 PRK10391
transcription modulator YdgT;
1-71 7.79e-50

transcription modulator YdgT;


:

Pssm-ID: 182426  Cd Length: 71  Bit Score: 150.35  E-value: 7.79e-50
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490519413  1 MTVQDYLLKFRKISTLESLEKLFDHLNYTLTDNQEIINMYRAADHRRAELVSGGRLFDLGQVPKTVWRYVQ 71
Cdd:PRK10391  1 MTVQDYLLKFRKISSLESLEKLFDHLNYTLTDDQEIINMYRAADHRRAELVSGGRLFDLGQVPKSVWHYVQ 71
 
Name Accession Description Interval E-value
PRK10391 PRK10391
transcription modulator YdgT;
1-71 7.79e-50

transcription modulator YdgT;


Pssm-ID: 182426  Cd Length: 71  Bit Score: 150.35  E-value: 7.79e-50
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490519413  1 MTVQDYLLKFRKISTLESLEKLFDHLNYTLTDNQEIINMYRAADHRRAELVSGGRLFDLGQVPKTVWRYVQ 71
Cdd:PRK10391  1 MTVQDYLLKFRKISSLESLEKLFDHLNYTLTDDQEIINMYRAADHRRAELVSGGRLFDLGQVPKSVWHYVQ 71
HHA pfam05321
Haemolysin expression modulating protein; This family consists of haemolysin expression ...
 8-67 3.22e-17

Haemolysin expression modulating protein; This family consists of haemolysin expression modulating protein (HHA) homologs. YmoA and Hha are highly similar bacterial proteins downregulating gene expression in Yersinia enterocolitica and Escherichia coli, respectively.


Pssm-ID: 428422  Cd Length: 56  Bit Score: 67.64  E-value: 3.22e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 490519413   8 LKFRKISTLESLEKLFDHLNYTLTDNqEIINMYRAADHRRAELVSgGRLFDlgQVPKTVW 67
Cdd:pfam05321  1 MRLRRCSSIDTLEKVIEKNKYELTND-ELSSFYSAADHRLAELTM-GKLYD--KIPKSVW 56
 
Name Accession Description Interval E-value
PRK10391 PRK10391
transcription modulator YdgT;
1-71 7.79e-50

transcription modulator YdgT;


Pssm-ID: 182426  Cd Length: 71  Bit Score: 150.35  E-value: 7.79e-50
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490519413  1 MTVQDYLLKFRKISTLESLEKLFDHLNYTLTDNQEIINMYRAADHRRAELVSGGRLFDLGQVPKTVWRYVQ 71
Cdd:PRK10391  1 MTVQDYLLKFRKISSLESLEKLFDHLNYTLTDDQEIINMYRAADHRRAELVSGGRLFDLGQVPKSVWHYVQ 71
HHA pfam05321
Haemolysin expression modulating protein; This family consists of haemolysin expression ...
 8-67 3.22e-17

Haemolysin expression modulating protein; This family consists of haemolysin expression modulating protein (HHA) homologs. YmoA and Hha are highly similar bacterial proteins downregulating gene expression in Yersinia enterocolitica and Escherichia coli, respectively.


Pssm-ID: 428422  Cd Length: 56  Bit Score: 67.64  E-value: 3.22e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 490519413   8 LKFRKISTLESLEKLFDHLNYTLTDNqEIINMYRAADHRRAELVSgGRLFDlgQVPKTVW 67
Cdd:pfam05321  1 MRLRRCSSIDTLEKVIEKNKYELTND-ELSSFYSAADHRLAELTM-GKLYD--KIPKSVW 56
PRK10945 PRK10945
hemolysin expression modulator Hha;
1-71 8.87e-14

hemolysin expression modulator Hha;


Pssm-ID: 182856  Cd Length: 72  Bit Score: 59.49  E-value: 8.87e-14
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490519413  1 MTVQDYLLKFRKISTLESLEKLFDHLNYTLTDNqEIINMYRAADHRRAELvSGGRLFDlgQVPKTVWRYVQ 71
Cdd:PRK10945  6 LTKTDYLMRLRRCQTIDTLERVIEKNKYELSDD-ELAVFYSAADHRLAEL-TMNKLYD--KIPSSVWKFVR 72
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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