NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|490520602|ref|WP_004386070|]
View 

MULTISPECIES: lipoprotein toxin entericidin B [Cronobacter]

Protein Classification

similar to entericidin B( domain architecture ID 10013421)

protein similar to entericidin B

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PRK10081 PRK10081
lipoprotein toxin entericidin B;
1-48 3.22e-18

lipoprotein toxin entericidin B;


:

Pssm-ID: 170240  Cd Length: 48  Bit Score: 68.95  E-value: 3.22e-18
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*...
gi 490520602  1 MVKKTIAALFSALVLSSLLTACNTTRGVGEDIQDGGSAISGAATRASQ 48
Cdd:PRK10081  1 MVKKTIAAIFSVLVLSTVLTACNTTRGVGEDISDGGNAISGAATKAQQ 48
 
Name Accession Description Interval E-value
PRK10081 PRK10081
lipoprotein toxin entericidin B;
1-48 3.22e-18

lipoprotein toxin entericidin B;


Pssm-ID: 170240  Cd Length: 48  Bit Score: 68.95  E-value: 3.22e-18
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*...
gi 490520602  1 MVKKTIAALFSALVLSSLLTACNTTRGVGEDIQDGGSAISGAATRASQ 48
Cdd:PRK10081  1 MVKKTIAAIFSVLVLSTVLTACNTTRGVGEDISDGGNAISGAATKAQQ 48
COG5510 COG5510
Predicted small secreted protein [Function unknown];
4-46 4.27e-11

Predicted small secreted protein [Function unknown];


Pssm-ID: 444261  Cd Length: 45  Bit Score: 51.00  E-value: 4.27e-11
                        10        20        30        40
                ....*....|....*....|....*....|....*....|...
gi 490520602  4 KTIAALFSALVLSSLLTACNTTRGVGEDIQDGGSAISGAATRA 46
Cdd:COG5510   2 KKLILLLLLLLLALLLAGCNTVKGAGEDIESGGEAIEDAAEKV 44
Entericidin pfam08085
Entericidin EcnA/B family; This family consists of the entericidin antidote/toxin peptides. ...
 24-43 2.76e-04

Entericidin EcnA/B family; This family consists of the entericidin antidote/toxin peptides. The entericidin locus is activated in stationary phase under high osmolarity conditions by rho-S and simultaneously repressed by the osmoregulatory EnvZ/OmpR signal transduction pathway. The entericidin locus encodes tandem paralogous genes (ecnAB) and directs the synthesis of two small cell-envelope lipoproteins which can maintain plasmids in bacterial population by means of post-segregational killing.


Pssm-ID: 429826  Cd Length: 20  Bit Score: 33.04  E-value: 2.76e-04
                         10        20
                 ....*....|....*....|
gi 490520602  24 TTRGVGEDIQDGGSAISGAA 43
Cdd:pfam08085  1 TVEGAGQDIQAGGEAIEDAA 20
 
Name Accession Description Interval E-value
PRK10081 PRK10081
lipoprotein toxin entericidin B;
1-48 3.22e-18

lipoprotein toxin entericidin B;


Pssm-ID: 170240  Cd Length: 48  Bit Score: 68.95  E-value: 3.22e-18
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*...
gi 490520602  1 MVKKTIAALFSALVLSSLLTACNTTRGVGEDIQDGGSAISGAATRASQ 48
Cdd:PRK10081  1 MVKKTIAAIFSVLVLSTVLTACNTTRGVGEDISDGGNAISGAATKAQQ 48
COG5510 COG5510
Predicted small secreted protein [Function unknown];
4-46 4.27e-11

Predicted small secreted protein [Function unknown];


Pssm-ID: 444261  Cd Length: 45  Bit Score: 51.00  E-value: 4.27e-11
                        10        20        30        40
                ....*....|....*....|....*....|....*....|...
gi 490520602  4 KTIAALFSALVLSSLLTACNTTRGVGEDIQDGGSAISGAATRA 46
Cdd:COG5510   2 KKLILLLLLLLLALLLAGCNTVKGAGEDIESGGEAIEDAAEKV 44
Entericidin pfam08085
Entericidin EcnA/B family; This family consists of the entericidin antidote/toxin peptides. ...
 24-43 2.76e-04

Entericidin EcnA/B family; This family consists of the entericidin antidote/toxin peptides. The entericidin locus is activated in stationary phase under high osmolarity conditions by rho-S and simultaneously repressed by the osmoregulatory EnvZ/OmpR signal transduction pathway. The entericidin locus encodes tandem paralogous genes (ecnAB) and directs the synthesis of two small cell-envelope lipoproteins which can maintain plasmids in bacterial population by means of post-segregational killing.


Pssm-ID: 429826  Cd Length: 20  Bit Score: 33.04  E-value: 2.76e-04
                         10        20
                 ....*....|....*....|
gi 490520602  24 TTRGVGEDIQDGGSAISGAA 43
Cdd:pfam08085  1 TVEGAGQDIQAGGEAIEDAA 20
PRK09810 PRK09810
lipoprotein antitoxin entericidin A;
13-44 2.53e-03

lipoprotein antitoxin entericidin A;


Pssm-ID: 137533  Cd Length: 41  Bit Score: 31.14  E-value: 2.53e-03
                        10        20        30
                ....*....|....*....|....*....|..
gi 490520602 13 LVLSSLLTACNTTRGVGEDIQDGGSAISGAAT 44
Cdd:PRK09810 10 LLASTLLTGCNTARGFGEDIKHLGNSISRAAS 41
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH