|
Name |
Accession |
Description |
Interval |
E-value |
| DppC |
COG1173 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
37-274 |
2.35e-102 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440786 [Multi-domain] Cd Length: 275 Bit Score: 299.72 E-value: 2.35e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521630 37 SPWLPLPDPLQSDLAAVFQAPGPQHWLGADQLGRDVLSRILAGARLSLFVVIIAALIAATMGTLMGMVAGYFGGWVDALI 116
Cdd:COG1173 35 APLLAPYDPTAQDLAARLQPPSAAHWLGTDQLGRDVLSRLLYGARISLLVGLLAVLIALVIGVLLGLLAGYFGGWVDAVL 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521630 117 MRLIDIQLAVPFILLILLVMALFGTSLANIIVIMGVASWAIYARVARARTLEIRELEYIEAARTMGFSHLRIMLRHILPA 196
Cdd:COG1173 115 MRLVDVLLAFPSLLLAIALVAVLGPGLLNVILALGLTGWPGYARLVRAQVLSLREREYVEAARALGASPLRIIFRHILPN 194
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 490521630 197 LATPLLVLLTLDIPRLIVLEASVGFLGMGIQPPTPTLGNLIGEGRAYMLLAPWLVVWPGCAIAMLVVGCNLLGDyWLR 274
Cdd:COG1173 195 VLPPLIVQATLGIASAILAEAGLSFLGLGVQPPTPSWGTMLSEGRNYLLTAPWLALFPGLAIVLTVLAFNLLGD-GLR 271
|
|
| nickel_nikC |
TIGR02790 |
nickel ABC transporter, permease subunit NikC; This family consists of the NikC family of ... |
37-270 |
1.10e-66 |
|
nickel ABC transporter, permease subunit NikC; This family consists of the NikC family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikB. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131837 [Multi-domain] Cd Length: 258 Bit Score: 208.39 E-value: 1.10e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521630 37 SPWLPLPDPLQSDLAAVFQAPGPQHWLGADQLGRDVLSRILAGARLSLFVVIIAALIAATMGTLMGMVAGYFGGWVDALI 116
Cdd:TIGR02790 18 APWIAPHDPLAQNLPMRLLGPSMEYWLGTDHLGRCIFSRLIFGARVSLGSALLVLGLVLTIGLLIGGLAGYIGGRVDEAI 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521630 117 MRLIDIQLAVPFILLILLVMALFGTSLANIIVIMGVASWAIYARVARARTLEIRELEYIEAARTMGFSHLRIMLRHILPA 196
Cdd:TIGR02790 98 MRVCDVFLSFPTIILSLAIVGILGPGLENVIIAIVLVHWAWYARMVRGMVVSLKQREFVLAARTSGASHWQIIRRHILPN 177
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 490521630 197 LATPLLVLLTLDIPRLIVLEASVGFLGMGIQPPTPTLGNLIGEGRAYMLLAPWLVVWPGCAIAMLVVGCNLLGD 270
Cdd:TIGR02790 178 ILSPIIVLATLDIGHVILHIAGLSFLGLGIQPPTPEWGAMLSEAKQYIWTQPLLMIYPGLAILISVMAFNLLGD 251
|
|
| nikC |
PRK10417 |
nickel transporter permease NikC; Provisional |
37-270 |
5.71e-64 |
|
nickel transporter permease NikC; Provisional
Pssm-ID: 236687 [Multi-domain] Cd Length: 272 Bit Score: 201.82 E-value: 5.71e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521630 37 SPWLPLPDPLQSDLAAVFQAPGPQHWLGADQLGRDVLSRILAGARLSLFVVIIAALIAATMGTLMGMVAGYFGGWVDALI 116
Cdd:PRK10417 23 SQWWLPYDPQAIDLPSRLLSPDAQHWLGTDHLGRDIFSRLMAGTRVSLGSVMACLLLVLALGLVIGGSAGLLGGRVDQAT 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521630 117 MRLIDIQLAVPFILLILLVMALFGTSLANIIVIMGVASWAIYARVARARTLEIRELEYIEAARTMGFSHLRIMLRHILPA 196
Cdd:PRK10417 103 MRVADMFMTFPTSILAFFMVGVLGTGLTNVIIAIALSHWAWYARMVRSLVISLRQREFVLAARLSGAGHVRVFIDHLLPA 182
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 490521630 197 LATPLLVLLTLDIPRLIVLEASVGFLGMGIQPPTPTLGNLIGEGRAYMLLAPWLVVWPGCAIAMLVVGCNLLGD 270
Cdd:PRK10417 183 VIPQLLVLATLDIGHMMLHVAGLSFLGLGVTAPTAEWGVMINDARQYIWTQPLLMFWPGLALFISVMAFNLLGD 256
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
80-261 |
1.46e-17 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 78.47 E-value: 1.46e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521630 80 ARLSLFVVIIAALIAATMGTLMGMVAGYFGGWVDALIMRLIDIQLAVPFILLILLVMALFG--------TSLANIIVIMG 151
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGvllgwgilPGLGLPALILA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521630 152 VASWAIYARVARARTLEIRELEYIEAARTMGFSHLRIMLRHILPALATPLLVLLTLDIPRLIVLEASVGFLGMGIQPPTP 231
Cdd:cd06261 81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160
|
170 180 190
....*....|....*....|....*....|
gi 490521630 232 TLGNLIGEGRAYMLLAPWLVVWPGCAIAML 261
Cdd:cd06261 161 TGLLLIFAILFPGDLGVAAAVALILLLLSL 190
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
98-263 |
1.31e-15 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 73.10 E-value: 1.31e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521630 98 GTLMGMVAG-YFGGWVDALIMRLIDIQLAVP-FILLILLVMALFGTSLANII---VIMGVASWAIYARVARARTLEIREL 172
Cdd:pfam00528 1 GIPLGIIAAlRRGRRLDRLLRPLIDLLQALPsFVLAILLVVIAILSILGHGIlpaIILALLGWAGYARLIRRAALRSLPS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521630 173 EYIEAARTMGFSHLRIMLRHILPALATPLLVLLTLDIPRLIVLEASVGFL----GMGIQPPTPTLGNLIGEGRAYMlLAP 248
Cdd:pfam00528 81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgswpGLGLLLIEAILGYDYPEIQGPV-LAA 159
|
170
....*....|....*
gi 490521630 249 WLVVWPGCAIAMLVV 263
Cdd:pfam00528 160 ALILLLLNLLVDILQ 174
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| DppC |
COG1173 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
37-274 |
2.35e-102 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440786 [Multi-domain] Cd Length: 275 Bit Score: 299.72 E-value: 2.35e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521630 37 SPWLPLPDPLQSDLAAVFQAPGPQHWLGADQLGRDVLSRILAGARLSLFVVIIAALIAATMGTLMGMVAGYFGGWVDALI 116
Cdd:COG1173 35 APLLAPYDPTAQDLAARLQPPSAAHWLGTDQLGRDVLSRLLYGARISLLVGLLAVLIALVIGVLLGLLAGYFGGWVDAVL 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521630 117 MRLIDIQLAVPFILLILLVMALFGTSLANIIVIMGVASWAIYARVARARTLEIRELEYIEAARTMGFSHLRIMLRHILPA 196
Cdd:COG1173 115 MRLVDVLLAFPSLLLAIALVAVLGPGLLNVILALGLTGWPGYARLVRAQVLSLREREYVEAARALGASPLRIIFRHILPN 194
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 490521630 197 LATPLLVLLTLDIPRLIVLEASVGFLGMGIQPPTPTLGNLIGEGRAYMLLAPWLVVWPGCAIAMLVVGCNLLGDyWLR 274
Cdd:COG1173 195 VLPPLIVQATLGIASAILAEAGLSFLGLGVQPPTPSWGTMLSEGRNYLLTAPWLALFPGLAIVLTVLAFNLLGD-GLR 271
|
|
| nickel_nikC |
TIGR02790 |
nickel ABC transporter, permease subunit NikC; This family consists of the NikC family of ... |
37-270 |
1.10e-66 |
|
nickel ABC transporter, permease subunit NikC; This family consists of the NikC family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikB. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131837 [Multi-domain] Cd Length: 258 Bit Score: 208.39 E-value: 1.10e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521630 37 SPWLPLPDPLQSDLAAVFQAPGPQHWLGADQLGRDVLSRILAGARLSLFVVIIAALIAATMGTLMGMVAGYFGGWVDALI 116
Cdd:TIGR02790 18 APWIAPHDPLAQNLPMRLLGPSMEYWLGTDHLGRCIFSRLIFGARVSLGSALLVLGLVLTIGLLIGGLAGYIGGRVDEAI 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521630 117 MRLIDIQLAVPFILLILLVMALFGTSLANIIVIMGVASWAIYARVARARTLEIRELEYIEAARTMGFSHLRIMLRHILPA 196
Cdd:TIGR02790 98 MRVCDVFLSFPTIILSLAIVGILGPGLENVIIAIVLVHWAWYARMVRGMVVSLKQREFVLAARTSGASHWQIIRRHILPN 177
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 490521630 197 LATPLLVLLTLDIPRLIVLEASVGFLGMGIQPPTPTLGNLIGEGRAYMLLAPWLVVWPGCAIAMLVVGCNLLGD 270
Cdd:TIGR02790 178 ILSPIIVLATLDIGHVILHIAGLSFLGLGIQPPTPEWGAMLSEAKQYIWTQPLLMIYPGLAILISVMAFNLLGD 251
|
|
| nikC |
PRK10417 |
nickel transporter permease NikC; Provisional |
37-270 |
5.71e-64 |
|
nickel transporter permease NikC; Provisional
Pssm-ID: 236687 [Multi-domain] Cd Length: 272 Bit Score: 201.82 E-value: 5.71e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521630 37 SPWLPLPDPLQSDLAAVFQAPGPQHWLGADQLGRDVLSRILAGARLSLFVVIIAALIAATMGTLMGMVAGYFGGWVDALI 116
Cdd:PRK10417 23 SQWWLPYDPQAIDLPSRLLSPDAQHWLGTDHLGRDIFSRLMAGTRVSLGSVMACLLLVLALGLVIGGSAGLLGGRVDQAT 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521630 117 MRLIDIQLAVPFILLILLVMALFGTSLANIIVIMGVASWAIYARVARARTLEIRELEYIEAARTMGFSHLRIMLRHILPA 196
Cdd:PRK10417 103 MRVADMFMTFPTSILAFFMVGVLGTGLTNVIIAIALSHWAWYARMVRSLVISLRQREFVLAARLSGAGHVRVFIDHLLPA 182
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 490521630 197 LATPLLVLLTLDIPRLIVLEASVGFLGMGIQPPTPTLGNLIGEGRAYMLLAPWLVVWPGCAIAMLVVGCNLLGD 270
Cdd:PRK10417 183 VIPQLLVLATLDIGHMMLHVAGLSFLGLGVTAPTAEWGVMINDARQYIWTQPLLMFWPGLALFISVMAFNLLGD 256
|
|
| PRK15082 |
PRK15082 |
glutathione ABC transporter permease GsiD; Provisional |
37-270 |
1.36e-61 |
|
glutathione ABC transporter permease GsiD; Provisional
Pssm-ID: 185040 [Multi-domain] Cd Length: 301 Bit Score: 196.87 E-value: 1.36e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521630 37 SPWLPLPDPLQS-DLAAVFQAPGPQHWLGADQLGRDVLSRILAGARLSLFVVIIAALIAATMGTLMGMVAGYFGGWVDAL 115
Cdd:PRK15082 55 APWIAPYDAENYfDYDALNAGPSLQHWFGVDSLGRDIFSRILVGARISLAAGFFSVAIGAAIGTVLGLLAGYYEGWWDRI 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521630 116 IMRLIDIQLAVPFILLILLVMALFGTSLANIIVIMGVASWAIYARVARARTLEIRELEYIEAARTMGFSHLRIMLRHILP 195
Cdd:PRK15082 135 IMRICDVLFAFPGILLAIAVVAILGSGMANVIIAVAIFSIPAFARLVRGNTLVLKQQTYIESARSIGASDWTILLRHILP 214
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 490521630 196 ALATPLLVLLTLDIPRLIVLEASVGFLGMGIQPPTPTLGNLIGEGRAYMLLAPWLVVWPGCAIAMLVVGCNLLGD 270
Cdd:PRK15082 215 GTVSSIVVYFTMRIGTSIITAASLSFLGLGAQPPTPEWGAMLNEARADMVIAPHVALFPSLAIFLTVLAFNLLGD 289
|
|
| PRK09881 |
PRK09881 |
D,D-dipeptide ABC transporter permease; |
37-270 |
1.85e-56 |
|
D,D-dipeptide ABC transporter permease;
Pssm-ID: 182131 [Multi-domain] Cd Length: 296 Bit Score: 183.48 E-value: 1.85e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521630 37 SPWLPLPDPLQSDLAAVFQAPGPQHWLGADQLGRDVLSRILAGARLSLFVVIIAALIAATMGTLMGMVAGYFGGWVDALI 116
Cdd:PRK09881 50 SPWLATHDPNAIDLTARLLPPSAAHWFGTDEVGRDLFSRVLVGSQQSILAGLVVVAIAGMIGSLLGCLSGVLGGRADAII 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521630 117 MRLIDIQLAVPFILLILLVMALFGTSLANIIVIMGVASWAIYARVARARTLEIRELEYIEAARTMGFSHLRIMLRHILPA 196
Cdd:PRK09881 130 MRIMDIMLSIPSLVLTMALAAALGPSLFNAMLAIAIVRIPFYVRLARGQALVVRQYTYVQAAKTFGASRWHLISWHILRN 209
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 490521630 197 LATPLLVLLTLDIPRLIVLEASVGFLGMGIQPPTPTLGNLIGEGRAYMLLAPWLVVWPGCAIAMLVVGCNLLGD 270
Cdd:PRK09881 210 SLPPLIVQASLDIGSAILMAATLGFIGLGAQQPSAEWGAMVANGRNYVLDQWWYCAFPGAAILLTAVGFNLFGD 283
|
|
| PRK10913 |
PRK10913 |
dipeptide ABC transporter permease DppC; |
60-270 |
3.96e-47 |
|
dipeptide ABC transporter permease DppC;
Pssm-ID: 182833 [Multi-domain] Cd Length: 300 Bit Score: 159.56 E-value: 3.96e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521630 60 QHWLGADQLGRDVLSRILAGARLSLFVVIIAALIAATMGTLMGMVAGYFGGWVDALIMRLIDIQLAVPFILLILLVMALF 139
Cdd:PRK10913 78 AHILGTDDVGRDVLSRLMYGARLSLLVGCLVVVLSLVMGVILGLIAGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIF 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521630 140 GTSLANIIVIMGVASWAIYARVARARTLEIRELEYIEAARTMGFSHLRIMLRHILPALATPLLVLLTLDIPRLIVLEASV 219
Cdd:PRK10913 158 GPSIVNAALALTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINILPNCLAPLIVQASLGFSNAILDMAAL 237
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 490521630 220 GFLGMGIQPPTPTLGNLIGEGRAYMLLAPWLVVWPGCAIAMLVVGCNLLGD 270
Cdd:PRK10913 238 GFLGMGAQPPTPEWGTMLSDVLQFAQSAWWVVTFPGLAILLTVLAFNLMGD 288
|
|
| YejE |
COG4239 |
ABC-type microcin C transport system, permease component YejE [Secondary metabolites ... |
56-252 |
8.34e-47 |
|
ABC-type microcin C transport system, permease component YejE [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443381 [Multi-domain] Cd Length: 342 Bit Score: 159.55 E-value: 8.34e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521630 56 APGPQHWLGADQLGRDVLSRILAGARLSLFVVIIAALIAATMGTLMGMVAGYFGGWVDALIMRLIDIQLAVPFILLILLV 135
Cdd:COG4239 116 PPSAENWLGTDDQGRDVLARLIYGFRISVLFGLALTVISSVIGVAAGAVQGYFGGRVDLLFQRFIEIWSSMPELYLLIIL 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521630 136 MALFGTSLANIIVIMGVASWAIYARVARARTLEIRELEYIEAARTMGFSHLRIMLRHILPALATPLLVLLTLDIPRLIVL 215
Cdd:COG4239 196 SSIFQPSFWLLLGILLLFGWMGLVGVVRAEFLRARNLEYVRAARALGVSDRRIMFRHILPNAMVATLTFLPFILSGAITT 275
|
170 180 190
....*....|....*....|....*....|....*..
gi 490521630 216 EASVGFLGMGIQPPTPTLGNLIGEGRAYmLLAPWLVV 252
Cdd:COG4239 276 LTSLDFLGFGLPPGSPSLGELLAQGKNN-LQAPWLGL 311
|
|
| PRK15406 |
PRK15406 |
oligopeptide ABC transporter permease OppC; Provisional |
37-270 |
4.56e-45 |
|
oligopeptide ABC transporter permease OppC; Provisional
Pssm-ID: 185304 [Multi-domain] Cd Length: 302 Bit Score: 154.22 E-value: 4.56e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521630 37 SPWLPLPDPLQSDLAAVFQAPG--PQHWLGADQLGRDVLSRILAGARLSLFVVIIAALIAATMGTLMGMVAGYFGGWVDA 114
Cdd:PRK15406 56 APMLSQFAYDDTDWGMMSSAPDmeSGHYFGTDSSGRDLLVRVAIGGRISLMVGVAAALVAVVVGTLYGSLSGYLGGKVDS 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521630 115 LIMRLIDIQLAVPFILLILLVMALFGTSLANIIVIMGVASWAIYARVARARTLEIRELEYIEAARTMGFSHLRIMLRHIL 194
Cdd:PRK15406 136 VMMRLLEILNSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLDMARIVRGQTLSLKRKEFIEAAQVGGVSTRGIVLRHIV 215
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 490521630 195 PALATPLLVLLTLDIPRLIVLEASVGFLGMGIQPPTPTLGNLIGEGRAYMLLAPWLVVWPGCAIAMLVVGCNLLGD 270
Cdd:PRK15406 216 PNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSDGANSMEVSPWLLLFPAGFLVVTLFCFNFIGD 291
|
|
| PRK15021 |
PRK15021 |
microcin C ABC transporter permease; Provisional |
56-262 |
1.50e-32 |
|
microcin C ABC transporter permease; Provisional
Pssm-ID: 184982 [Multi-domain] Cd Length: 341 Bit Score: 122.40 E-value: 1.50e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521630 56 APGPQHWLGADQLGRDVLSRILAGARLSLFVVIIAALIAATMGTLMGMVAGYFGGWVDALIMRLIDIQLAVPFILLILLV 135
Cdd:PRK15021 116 PPSRQNWLGTDANGGDVLARILYGTRISVLFGLMLTLCSSVMGVLAGALQGYYGGKVDLWGQRFIEVWSGMPTLFLIILL 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521630 136 MALFGTSLANIIVIMGVASWAIYARVARARTLEIRELEYIEAARTMGFSHLRIMLRHILPALATPLLVLLTLDIPRLIVL 215
Cdd:PRK15021 196 SSVVQPNFWWLLAITVLFGWMSLVGVVRAEFLRTRNFDYIRAAQALGVSDRSIILRHMLPNAMVATLTFLPFILCSSITT 275
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 490521630 216 EASVGFLGMGIQPPTPTLGNLIGEGRAYmLLAPWLVVWPGCAIAMLV 262
Cdd:PRK15021 276 LTSLDFLGFGLPLGSPSLGELLLQGKNN-LQAPWLGITAFLSVAILL 321
|
|
| PRK15111 |
PRK15111 |
peptide ABC transporter permease SapC; |
62-281 |
1.66e-27 |
|
peptide ABC transporter permease SapC;
Pssm-ID: 185066 [Multi-domain] Cd Length: 296 Bit Score: 107.86 E-value: 1.66e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521630 62 WLGADQLGRDVLSRILAGARLSLFVVIIAALIAATMGTLMGMVAGYFGGWVDALIMRLIDIQLAVPFILLILLVMALFGT 141
Cdd:PRK15111 77 FLGTDDLGRDVLSRLLSGAAPTVGGAFVVTLAATLCGLVLGVFAGATHGLRSAVLNHILDTLLSIPSLLLAIIVVAFAGP 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521630 142 SLANIIvimgVASW-AIYARVARARTLEIR---ELEYIEAARTMGFSHLRIMLRHILPALATPLLVLLTLDIPRLIVLEA 217
Cdd:PRK15111 157 SLSHAM----FAVWlALLPRMVRSIYSAVHdelEKEYVIAARLDGASTLNILWYAVLPNITAGLVTEITRALSMAILDIA 232
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 490521630 218 SVGFLGMGIQPPTPTLGNLIGEGRAYMLLAPWLVVWPGCAIAMLVVGCNLLGDYWLRTTQARVE 281
Cdd:PRK15111 233 ALGFLDLGAQLPSPEWGAMLGDSLELIYVAPWTVMLPGAAIMLSVLLVNLLGDGIRRAIIAGVE 296
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
80-261 |
1.46e-17 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 78.47 E-value: 1.46e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521630 80 ARLSLFVVIIAALIAATMGTLMGMVAGYFGGWVDALIMRLIDIQLAVPFILLILLVMALFG--------TSLANIIVIMG 151
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGvllgwgilPGLGLPALILA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521630 152 VASWAIYARVARARTLEIRELEYIEAARTMGFSHLRIMLRHILPALATPLLVLLTLDIPRLIVLEASVGFLGMGIQPPTP 231
Cdd:cd06261 81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160
|
170 180 190
....*....|....*....|....*....|
gi 490521630 232 TLGNLIGEGRAYMLLAPWLVVWPGCAIAML 261
Cdd:cd06261 161 TGLLLIFAILFPGDLGVAAAVALILLLLSL 190
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
98-263 |
1.31e-15 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 73.10 E-value: 1.31e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521630 98 GTLMGMVAG-YFGGWVDALIMRLIDIQLAVP-FILLILLVMALFGTSLANII---VIMGVASWAIYARVARARTLEIREL 172
Cdd:pfam00528 1 GIPLGIIAAlRRGRRLDRLLRPLIDLLQALPsFVLAILLVVIAILSILGHGIlpaIILALLGWAGYARLIRRAALRSLPS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521630 173 EYIEAARTMGFSHLRIMLRHILPALATPLLVLLTLDIPRLIVLEASVGFL----GMGIQPPTPTLGNLIGEGRAYMlLAP 248
Cdd:pfam00528 81 DLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgswpGLGLLLIEAILGYDYPEIQGPV-LAA 159
|
170
....*....|....*
gi 490521630 249 WLVVWPGCAIAMLVV 263
Cdd:pfam00528 160 ALILLLLNLLVDILQ 174
|
|
| DppB |
COG0601 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
67-213 |
3.33e-14 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440366 [Multi-domain] Cd Length: 314 Bit Score: 71.25 E-value: 3.33e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521630 67 QLGRDVLSRILAGARLSLFVVIIAALIAATMGTLMGMVAGYF-GGWVDALIMRLIDIQLAVPFILLILLVMALFG----- 140
Cdd:COG0601 82 VYGRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRrGSWLDRLITVLALLGISIPSFWLGLLLILLFAvklgw 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521630 141 --------------TSLANII---VIMGVASWAIYARVARARTLEIRELEYIEAARTMGFSHLRIMLRHILPALATPLLV 203
Cdd:COG0601 162 lpvsgrvspwedflDALRHLIlpaLTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNALIPVVT 241
|
170
....*....|
gi 490521630 204 LLTLDIPRLI 213
Cdd:COG0601 242 VLGLQLGGLL 251
|
|
| TauC |
COG0600 |
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ... |
83-198 |
2.96e-07 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440365 [Multi-domain] Cd Length: 254 Bit Score: 50.53 E-value: 2.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521630 83 SLFVVIIAALIAATMGTLMGMVAGYFGgWVDALIMRLIDIQLAVPFILLILLVMALFGTSLANIIVIMGVASWAIYARVA 162
Cdd:COG0600 66 SLLRVLLGFALAALLGVPLGLLLGLSR-LLRRLLDPLLVFLRPIPPLALAPLLILWFGIGEASKIFVIFLGAFFPILLNT 144
|
90 100 110
....*....|....*....|....*....|....*.
gi 490521630 163 RARTLEIRElEYIEAARTMGFSHLRIMLRHILPALA 198
Cdd:COG0600 145 AAGVRSVDP-ELLELARSLGASRWQILRKVVLPAAL 179
|
|
| CysU |
COG0555 |
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ... |
75-202 |
2.03e-05 |
|
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440321 [Multi-domain] Cd Length: 268 Bit Score: 45.13 E-value: 2.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521630 75 RILAGARLSLFVVIIAALIAATMGTLMGMVAGYFGGWVDALIMRLIDIQLAVP-----FILLILL--------VMALFGT 141
Cdd:COG0555 51 RVLAALKLSLGTALIAALINLVFGLPLAWVLVRYRFPGKRLVDALVDLPFALPtavagIALLLLFgpngwlgqLLAPLGI 130
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 490521630 142 SLAN----IIVIMGVASWAIYARVARArTLEIRELEYIEAARTMGFSHLRIMLRHILPALATPLL 202
Cdd:COG0555 131 KVAFtplgIVLAQTFVSLPFVVRTVQP-VLEELDPELEEAAATLGASRWQTFRRVILPLLLPALL 194
|
|
| PotC |
COG1177 |
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ... |
74-198 |
2.48e-05 |
|
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];
Pssm-ID: 440790 [Multi-domain] Cd Length: 262 Bit Score: 44.72 E-value: 2.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521630 74 SRILAGARLSLFVVIIAALIAATMGTLMGMVAGYFGGWVDALIMRLIDIQLAVPFILL---ILLVMALFGTSLANIIVIM 150
Cdd:COG1177 57 PRLLDALLNSLLIALLSTLLATVLGTPAALALARYRFRGRRLLLALLLLPLVVPGIVLgvaLLLLFSALGLSGGLWGLIL 136
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 490521630 151 GVASWAI--YARVARARTLEI-RELEyiEAARTMGFSHLRIMLRHILPALA 198
Cdd:COG1177 137 AHVVFTLpfVVLVVLARLQGFdPSLE--EAARDLGASPWQTFRRVTLPLIA 185
|
|
| HisM |
COG0765 |
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ... |
71-195 |
5.30e-04 |
|
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440528 [Multi-domain] Cd Length: 218 Bit Score: 40.44 E-value: 5.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521630 71 DVLSRILAGARLSLFVVIIAALIAATMGTLMGMVAGYFGGWVDALIMRLIDIQLAVPFILLILLV---MALFGTSLANI- 146
Cdd:COG0765 10 DYLPLLLEGLLVTLLLTVLAIVLGLVLGLLLALARLSPNPVLRWLATAYVEFFRGTPLLVQLFFIyfgLPLLGIDLSPFv 89
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 490521630 147 --IVIMGVASWAIYARVARARTLEIRELEYiEAARTMGFSHLRIMLRHILP 195
Cdd:COG0765 90 aaVIALTLNSAAYLAEIVRAGIQSVPKGQW-EAARALGLSRWQTMRRIILP 139
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
50-203 |
2.27e-03 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 39.37 E-value: 2.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521630 50 LAAVFQAPGPQHWLGADQLGRDVLSRILAGARLSLFVVIIAALIAATMGTLMGMVAGYFGGWVDALIMRLIDIQLAVPFI 129
Cdd:COG1178 310 LLWSLTKALDDNLTLDNYRFVLLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRRRGRLARLLDRLAMLPYAVPGI 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521630 130 LL----ILLVMALFGTSLANIIVIMGVASWAIY----ARVARARTLEIRElEYIEAARTMGFSHLRIMLRHILPALATPL 201
Cdd:COG1178 390 VLglglLLLFNRPLPLLLYGTLAILVLAYVVRFlpfaLRSLEAALAQIDP-SLEEAARSLGASPLRTLRRVTLPLLRPGL 468
|
..
gi 490521630 202 LV 203
Cdd:COG1178 469 LA 470
|
|
| |
