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MULTISPECIES: peptidoglycan DD-transpeptidase MrdA [Cronobacter]
Protein Classification
penicillin-binding protein 2 ( domain architecture ID 11484953 )
penicillin-binding protein (PBP) 2 is a membrane-associated enzyme that is involved in the synthesis of cross-linked peptidoglycan
List of domain hits
Name
Accession
Description
Interval
E-value
PRK10795
PRK10795 penicillin-binding protein 2; Provisional
1-633
0e+00
penicillin-binding protein 2; Provisional
Pssm-ID: 236761 [Multi-domain]
Cd Length: 634
Bit Score: 1389.88
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 1 M KL KD SFRDYTAESALFVRRALVAF A GIL V LTG I LI V NLY H LQI L RF N DYQTRSNENRIKLVPI P PSRGIIYDRNGTPLA 80
Cdd:PRK10795 2 K KL QN SFRDYTAESALFVRRALVAF L GIL L LTG V LI A NLY N LQI V RF T DYQTRSNENRIKLVPI A PSRGIIYDRNGTPLA 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 81 LNRTIYQ I EMMPEKVD SV Q D TL E ALRSVVDL N DDDIA N F K KERARS H RFTSIPVKTNLTEVQVARFAVNQYRFPGVEVKG 160
Cdd:PRK10795 82 LNRTIYQ L EMMPEKVD NL Q Q TL D ALRSVVDL T DDDIA A F R KERARS R RFTSIPVKTNLTEVQVARFAVNQYRFPGVEVKG 161
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 161 Y K RRYYPYG A ALTHVIGYVSKINDKDVERLDK D GKLANYAATHDIGKLGIERYYEDVLHG Q TGYEEVEVNNRGRVIRQL K 240
Cdd:PRK10795 162 Y Q RRYYPYG S ALTHVIGYVSKINDKDVERLDK E GKLANYAATHDIGKLGIERYYEDVLHG K TGYEEVEVNNRGRVIRQL H 241
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 241 E V PPQAGHDIYLTLDLKLQ T YIETLL Q GSRAAVVVTDPRTGGILA M VS M PSY N PNLFVDGISSKDYSGLLNDPN T PLINR 320
Cdd:PRK10795 242 E Q PPQAGHDIYLTLDLKLQ Q YIETLL A GSRAAVVVTDPRTGGILA L VS T PSY D PNLFVDGISSKDYSGLLNDPN R PLINR 321
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 321 ATQGVYPPASTVKPYVAVSALSAGVI N RNTSLFDPGWWQLPGSEKRYRDWKKWGHGRLNVTKSLEESADTFFYQVAYDMG 400
Cdd:PRK10795 322 ATQGVYPPASTVKPYVAVSALSAGVI T RNTSLFDPGWWQLPGSEKRYRDWKKWGHGRLNVTKSLEESADTFFYQVAYDMG 401
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 401 IDRLSEWM R KFGYG SL TGIDL S EERSGNMPTREWK M KRFKKPWYQGDTIPVGIGQGYWTATP V QM N KA M M I LINDG V VKV 480
Cdd:PRK10795 402 IDRLSEWM G KFGYG HY TGIDL A EERSGNMPTREWK Q KRFKKPWYQGDTIPVGIGQGYWTATP I QM S KA L M T LINDG I VKV 481
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 481 PHLLM T T VVN G QK VPW K QP EQ PPVGDIHSGYWEIAKDGMYGVANR A NGT G HKYFA G APYKIAAKSGTAQVFGLKANETYN 560
Cdd:PRK10795 482 PHLLM S T AED G KQ VPW V QP HE PPVGDIHSGYWEIAKDGMYGVANR P NGT A HKYFA S APYKIAAKSGTAQVFGLKANETYN 561
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 490521765 561 AH R IAERLRDHKLMTAFAPY D NPQVAVA M ILENGGAGPAVGTIMRQILDHIMLGDNNT E LP T ENPA T AAAED R 633
Cdd:PRK10795 562 AH K IAERLRDHKLMTAFAPY N NPQVAVA I ILENGGAGPAVGTIMRQILDHIMLGDNNT D LP A ENPA V AAAED H 634
Name
Accession
Description
Interval
E-value
PRK10795
PRK10795 penicillin-binding protein 2; Provisional
1-633
0e+00
penicillin-binding protein 2; Provisional
Pssm-ID: 236761 [Multi-domain]
Cd Length: 634
Bit Score: 1389.88
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 1 M KL KD SFRDYTAESALFVRRALVAF A GIL V LTG I LI V NLY H LQI L RF N DYQTRSNENRIKLVPI P PSRGIIYDRNGTPLA 80
Cdd:PRK10795 2 K KL QN SFRDYTAESALFVRRALVAF L GIL L LTG V LI A NLY N LQI V RF T DYQTRSNENRIKLVPI A PSRGIIYDRNGTPLA 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 81 LNRTIYQ I EMMPEKVD SV Q D TL E ALRSVVDL N DDDIA N F K KERARS H RFTSIPVKTNLTEVQVARFAVNQYRFPGVEVKG 160
Cdd:PRK10795 82 LNRTIYQ L EMMPEKVD NL Q Q TL D ALRSVVDL T DDDIA A F R KERARS R RFTSIPVKTNLTEVQVARFAVNQYRFPGVEVKG 161
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 161 Y K RRYYPYG A ALTHVIGYVSKINDKDVERLDK D GKLANYAATHDIGKLGIERYYEDVLHG Q TGYEEVEVNNRGRVIRQL K 240
Cdd:PRK10795 162 Y Q RRYYPYG S ALTHVIGYVSKINDKDVERLDK E GKLANYAATHDIGKLGIERYYEDVLHG K TGYEEVEVNNRGRVIRQL H 241
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 241 E V PPQAGHDIYLTLDLKLQ T YIETLL Q GSRAAVVVTDPRTGGILA M VS M PSY N PNLFVDGISSKDYSGLLNDPN T PLINR 320
Cdd:PRK10795 242 E Q PPQAGHDIYLTLDLKLQ Q YIETLL A GSRAAVVVTDPRTGGILA L VS T PSY D PNLFVDGISSKDYSGLLNDPN R PLINR 321
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 321 ATQGVYPPASTVKPYVAVSALSAGVI N RNTSLFDPGWWQLPGSEKRYRDWKKWGHGRLNVTKSLEESADTFFYQVAYDMG 400
Cdd:PRK10795 322 ATQGVYPPASTVKPYVAVSALSAGVI T RNTSLFDPGWWQLPGSEKRYRDWKKWGHGRLNVTKSLEESADTFFYQVAYDMG 401
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 401 IDRLSEWM R KFGYG SL TGIDL S EERSGNMPTREWK M KRFKKPWYQGDTIPVGIGQGYWTATP V QM N KA M M I LINDG V VKV 480
Cdd:PRK10795 402 IDRLSEWM G KFGYG HY TGIDL A EERSGNMPTREWK Q KRFKKPWYQGDTIPVGIGQGYWTATP I QM S KA L M T LINDG I VKV 481
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 481 PHLLM T T VVN G QK VPW K QP EQ PPVGDIHSGYWEIAKDGMYGVANR A NGT G HKYFA G APYKIAAKSGTAQVFGLKANETYN 560
Cdd:PRK10795 482 PHLLM S T AED G KQ VPW V QP HE PPVGDIHSGYWEIAKDGMYGVANR P NGT A HKYFA S APYKIAAKSGTAQVFGLKANETYN 561
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 490521765 561 AH R IAERLRDHKLMTAFAPY D NPQVAVA M ILENGGAGPAVGTIMRQILDHIMLGDNNT E LP T ENPA T AAAED R 633
Cdd:PRK10795 562 AH K IAERLRDHKLMTAFAPY N NPQVAVA I ILENGGAGPAVGTIMRQILDHIMLGDNNT D LP A ENPA V AAAED H 634
pbp2_mrdA
TIGR03423 penicillin-binding protein 2; Members of this protein family are penicillin-binding protein 2 ...
19-614
0e+00
penicillin-binding protein 2; Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]
Pssm-ID: 274573 [Multi-domain]
Cd Length: 592
Bit Score: 957.36
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 19 RRALV AFAGI L V L T G I L IVN L YH LQ IL R FND Y Q T R S NE NRI K LVPIPP S RG I I Y DRNG TP LA L NR TIYQI E MM PEKVD SV 98
Cdd:TIGR03423 1 RRALV LGGLV L A L F G V L AAR L FY LQ VI R GEE Y A T L S ED NRI R LVPIPP P RG L I L DRNG VL LA D NR PSFSL E IV PEKVD DL 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 99 QD TL EA L RSVV DL NDD DIA N F K KE RA RS H RF TS IP V K TN LTE VQ VARFAVNQYR F PGVE VKGYKR RYYPYG AALT HV I GY 178
Cdd:TIGR03423 81 DA TL DR L AKLL DL DPE DIA R F L KE LK RS R RF EP IP L K SD LTE EE VARFAVNQYR L PGVE IEARLK RYYPYG ELAA HV L GY 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 179 V SK IN DK D V ERL D kdgk L ANYA ATHD IGK L GIE R YYED V L H G QT GY E EVEVN N RGRVIR Q L KE VPP QA G H D IY LT L D LK L 258
Cdd:TIGR03423 161 V GE IN EE D L ERL E ---- P ANYA GGDY IGK S GIE K YYED E L R G KP GY R EVEVN A RGRVIR T L SR VPP VP G K D LV LT I D AR L 236
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 259 Q TYI E TL L Q G S R A AVVV T DPRTG G ILAMVS M PS YN PNLFVDGISSKDY SG LLNDP NT PL I NRA T QGVYPP A ST V KP Y VA V 338
Cdd:TIGR03423 237 Q QAA E KA L G G R R G AVVV M DPRTG E ILAMVS T PS FD PNLFVDGISSKDY KA LLNDP DR PL L NRA I QGVYPP G ST F KP V VA L 316
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 339 S AL SA GVI NRN T SLFD PG WW QL P G se K R Y R D WK KW GHGR LNVT K SL EES A D TF FYQ V A YDM GID RLS E WMRK FG Y G SL TG 418
Cdd:TIGR03423 317 A AL EE GVI TPE T RIYC PG YF QL G G -- R R F R C WK RG GHGR VDLR K AI EES C D VY FYQ L A LRL GID KIA E YAKR FG F G QK TG 394
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 419 IDL SE E R SG NM P T REWK M KRF KK PWY Q GDT IP V G IGQGY WTA TP V Q MNK A MMI L I N D G VVKV PHL LMTTV - VN G QK V PWK 497
Cdd:TIGR03423 395 IDL PG E K SG LV P S REWK R KRF GQ PWY P GDT LN V S IGQGY VLV TP L Q LAV A TAA L A N G G KLYK PHL VKSIE d PD G GV V RRT 474
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 498 Q PE QPPVGD I HSGYWEIAKD GM YG V A N RAN GT GHKYFA G A PYK I A A K S GTAQV FG LK AN E T Y N A HR I A ERLRDH K L MT AF 577
Cdd:TIGR03423 475 E PE VLRPLP I SPENLDVVRE GM RD V V N GPG GT ARRARL G L PYK M A G K T GTAQV VS LK QG E K Y D A EQ I P ERLRDH A L FV AF 554
570 580 590
....*....|....*....|....*....|....*...
gi 490521765 578 APYDNP QV AVA M I L E N GG A G PAV - GT I M R Q I L D HIM LG 614
Cdd:TIGR03423 555 APYDNP KI AVA V I V E H GG G G SSA a AP I A R K I M D AYL LG 592
FtsI
COG0768 Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2) [Cell ...
11-610
0e+00
Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2) [Cell cycle control, cell division, chromosome partitioning, Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440531 [Multi-domain]
Cd Length: 568
Bit Score: 636.10
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 11 TA E SA LF V RR A L VA F AGI L V L TGI L IVN L YH LQ ILRFND Y QTRSN ENRI KL VPIP PS RG I IYDRNG TP LA L N RTI Y QIEM 90
Cdd:COG0768 4 KK E KR LF R RR L L LL F LLV L L L FLL L VGR L FY LQ VVEGDE Y AELAE ENRI RT VPIP AP RG L IYDRNG NV LA T N VPV Y SLYA 83
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 91 M PE K V DSVQD T L E A L RSVVD L NDDDIANFK K ERA R S hrft SIPV K T NL TEVQV AR fa VNQYRF PGV E V KGYKR RYYPYG A 170
Cdd:COG0768 84 D PE E V KDPEE T A E K L AKLLG L DPEELRKKL K KKS R F ---- PVYL K R NL SPEEA AR -- IRALKL PGV Y V EAEYK RYYPYG E 157
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 171 ALT HV I GYV SK IN DK D verldkdgklanyaath D IGK L G I E RY YED V L H G QT G YEE VEV NN RGRVIR Q L - K E V PP QA G H D 249
Cdd:COG0768 158 LAA HV L GYV GE IN GG D ----------------- G IGK S G L E KA YED L L R G TP G KRR VEV DA RGRVIR D L g E E K PP VP G K D 220
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 250 IY LT L D LK LQ TYI E TL L QGS ------- RA AVVV T DP R TG G ILAM V S M PS YN PNLFV D G isskdysgllnd P NT PL I NRA T 322
Cdd:COG0768 221 LV LT I D SD LQ KIA E EA L KKA veeykak SG AVVV M DP K TG E ILAM A S Y PS FD PNLFV G G ------------ P DE PL R NRA V 288
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 323 QG V Y P P A ST V KP YV A VS AL SA GVI NRN T SLFD PG WWQLP G se KRY RDW KKW GHG R L NV T KS L EE S ADTF FY QV A YDM GID 402
Cdd:COG0768 289 QG T Y E P G ST F KP FT A AA AL EE GVI TPD T TFDC PG YYRVG G -- RTI RDW DRG GHG T L TL T EA L AK S SNVG FY KL A LRL GID 366
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 403 R L SEWMR KFG Y G SL TGIDL SE E R SG NM P TR ewkmkrfk K P WY Q G D T IPVG IGQG y WTA TP V Q MNK A MMILI N D GV VKV PH 482
Cdd:COG0768 367 K L YDYLK KFG L G QK TGIDL PG E A SG LL P SP -------- K R WY P G E T ATMS IGQG - LSV TP L Q LAQ A YAAIA N G GV LVK PH 437
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 483 L LMTT V - VN G QK V PWKQPEQPP V gd I HSGYW E IAKD GM Y GV A N RAN GT GHKY f A GAP Y KI A A K S GTAQV FGLKANET Y NA 561
Cdd:COG0768 438 L VKEI V d PD G EV V KEEPEVLRR V -- I SPETA E TVRE GM E GV V N EPG GT ARRA - A IPG Y RV A G K T GTAQV VDIGNGGY Y KG 514
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*..
gi 490521765 562 HR IA erlrdhk LMTA FAP Y DNP QV AVA MIL EN G G -------- A G P AVGT IM RQI L DH 610
Cdd:COG0768 515 RH IA ------- SFVG FAP A DNP RY AVA VVV EN P G ggayggtv A A P VFRE IM EAY L RL 564
Transpeptidase
pfam00905 Penicillin binding protein transpeptidase domain; The active site serine (residue 337 in Swiss: ...
271-609
5.16e-86
Penicillin binding protein transpeptidase domain; The active site serine (residue 337 in Swiss:P14677) is conserved in all members of this family.
Pssm-ID: 425939 [Multi-domain]
Cd Length: 296
Bit Score: 270.83
E-value: 5.16e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 271 AAV VV T DP R TG GI LAMV SM PSY N PN L F vdgisskdysgllndp NT PL I NRA TQGV Y P P A ST V KP YV A VS AL SA GV INRNT 350
Cdd:pfam00905 1 GSA VV L DP K TG EV LAMV GK PSY D PN G F ---------------- IG PL R NRA VTSR Y E P G ST F KP FT A LA AL DN GV LKPDE 64
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 351 SL FD PGWW Q LP G se K RYR DW KKWGH G RLNVTKS LE E S ADTFFYQV A YDM G I D R L SEWMR KFGYG SL TGI D L SE E RS G NMP 430
Cdd:pfam00905 65 TI FD WPGK Q QG G -- K SIG DW NQDQV G IGTLRQA LE Y S SNWYMQKL A QKL G A D K L RSYLK KFGYG NK TGI G L PG E NA G YLT 142
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 431 TR ewkmkrfkkp W YQ G D T IPV GIG qgy W T A TP V Q MNK A MMILI N D G VVKV PHL LMTT vvngqk VPWKQ P EQPPVGD I HSG 510
Cdd:pfam00905 143 PY ---------- W LE G A T ASF GIG --- L T I TP L Q QAQ A YAAIA N G G KLVP PHL VKSI ------ EDKVD P KVLNKLP I SKS 203
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 511 YW E IA KD GMYG V A N R an GTG HKYF A GAP YK I A A K S GTAQV F G L K ANET Y NAH riaerlr DHKLMTAF AP Y DNP QV A V A MI 590
Cdd:pfam00905 204 TA E KV KD MLRL V V N D -- GTG TGTA A VPG YK V A G K T GTAQV A G P K GGGY Y DGA ------- QIGWFVGY AP A DNP KY A F A VL 274
330 340
....*....|....*....|..
gi 490521765 591 LENGGA --- G PAVGT I MRQ IL D 609
Cdd:pfam00905 275 IDDPKR yyg G KVAAP I FKD IL E 296
Name
Accession
Description
Interval
E-value
PRK10795
PRK10795 penicillin-binding protein 2; Provisional
1-633
0e+00
penicillin-binding protein 2; Provisional
Pssm-ID: 236761 [Multi-domain]
Cd Length: 634
Bit Score: 1389.88
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 1 M KL KD SFRDYTAESALFVRRALVAF A GIL V LTG I LI V NLY H LQI L RF N DYQTRSNENRIKLVPI P PSRGIIYDRNGTPLA 80
Cdd:PRK10795 2 K KL QN SFRDYTAESALFVRRALVAF L GIL L LTG V LI A NLY N LQI V RF T DYQTRSNENRIKLVPI A PSRGIIYDRNGTPLA 81
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 81 LNRTIYQ I EMMPEKVD SV Q D TL E ALRSVVDL N DDDIA N F K KERARS H RFTSIPVKTNLTEVQVARFAVNQYRFPGVEVKG 160
Cdd:PRK10795 82 LNRTIYQ L EMMPEKVD NL Q Q TL D ALRSVVDL T DDDIA A F R KERARS R RFTSIPVKTNLTEVQVARFAVNQYRFPGVEVKG 161
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 161 Y K RRYYPYG A ALTHVIGYVSKINDKDVERLDK D GKLANYAATHDIGKLGIERYYEDVLHG Q TGYEEVEVNNRGRVIRQL K 240
Cdd:PRK10795 162 Y Q RRYYPYG S ALTHVIGYVSKINDKDVERLDK E GKLANYAATHDIGKLGIERYYEDVLHG K TGYEEVEVNNRGRVIRQL H 241
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 241 E V PPQAGHDIYLTLDLKLQ T YIETLL Q GSRAAVVVTDPRTGGILA M VS M PSY N PNLFVDGISSKDYSGLLNDPN T PLINR 320
Cdd:PRK10795 242 E Q PPQAGHDIYLTLDLKLQ Q YIETLL A GSRAAVVVTDPRTGGILA L VS T PSY D PNLFVDGISSKDYSGLLNDPN R PLINR 321
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 321 ATQGVYPPASTVKPYVAVSALSAGVI N RNTSLFDPGWWQLPGSEKRYRDWKKWGHGRLNVTKSLEESADTFFYQVAYDMG 400
Cdd:PRK10795 322 ATQGVYPPASTVKPYVAVSALSAGVI T RNTSLFDPGWWQLPGSEKRYRDWKKWGHGRLNVTKSLEESADTFFYQVAYDMG 401
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 401 IDRLSEWM R KFGYG SL TGIDL S EERSGNMPTREWK M KRFKKPWYQGDTIPVGIGQGYWTATP V QM N KA M M I LINDG V VKV 480
Cdd:PRK10795 402 IDRLSEWM G KFGYG HY TGIDL A EERSGNMPTREWK Q KRFKKPWYQGDTIPVGIGQGYWTATP I QM S KA L M T LINDG I VKV 481
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 481 PHLLM T T VVN G QK VPW K QP EQ PPVGDIHSGYWEIAKDGMYGVANR A NGT G HKYFA G APYKIAAKSGTAQVFGLKANETYN 560
Cdd:PRK10795 482 PHLLM S T AED G KQ VPW V QP HE PPVGDIHSGYWEIAKDGMYGVANR P NGT A HKYFA S APYKIAAKSGTAQVFGLKANETYN 561
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 490521765 561 AH R IAERLRDHKLMTAFAPY D NPQVAVA M ILENGGAGPAVGTIMRQILDHIMLGDNNT E LP T ENPA T AAAED R 633
Cdd:PRK10795 562 AH K IAERLRDHKLMTAFAPY N NPQVAVA I ILENGGAGPAVGTIMRQILDHIMLGDNNT D LP A ENPA V AAAED H 634
pbp2_mrdA
TIGR03423 penicillin-binding protein 2; Members of this protein family are penicillin-binding protein 2 ...
19-614
0e+00
penicillin-binding protein 2; Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]
Pssm-ID: 274573 [Multi-domain]
Cd Length: 592
Bit Score: 957.36
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 19 RRALV AFAGI L V L T G I L IVN L YH LQ IL R FND Y Q T R S NE NRI K LVPIPP S RG I I Y DRNG TP LA L NR TIYQI E MM PEKVD SV 98
Cdd:TIGR03423 1 RRALV LGGLV L A L F G V L AAR L FY LQ VI R GEE Y A T L S ED NRI R LVPIPP P RG L I L DRNG VL LA D NR PSFSL E IV PEKVD DL 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 99 QD TL EA L RSVV DL NDD DIA N F K KE RA RS H RF TS IP V K TN LTE VQ VARFAVNQYR F PGVE VKGYKR RYYPYG AALT HV I GY 178
Cdd:TIGR03423 81 DA TL DR L AKLL DL DPE DIA R F L KE LK RS R RF EP IP L K SD LTE EE VARFAVNQYR L PGVE IEARLK RYYPYG ELAA HV L GY 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 179 V SK IN DK D V ERL D kdgk L ANYA ATHD IGK L GIE R YYED V L H G QT GY E EVEVN N RGRVIR Q L KE VPP QA G H D IY LT L D LK L 258
Cdd:TIGR03423 161 V GE IN EE D L ERL E ---- P ANYA GGDY IGK S GIE K YYED E L R G KP GY R EVEVN A RGRVIR T L SR VPP VP G K D LV LT I D AR L 236
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 259 Q TYI E TL L Q G S R A AVVV T DPRTG G ILAMVS M PS YN PNLFVDGISSKDY SG LLNDP NT PL I NRA T QGVYPP A ST V KP Y VA V 338
Cdd:TIGR03423 237 Q QAA E KA L G G R R G AVVV M DPRTG E ILAMVS T PS FD PNLFVDGISSKDY KA LLNDP DR PL L NRA I QGVYPP G ST F KP V VA L 316
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 339 S AL SA GVI NRN T SLFD PG WW QL P G se K R Y R D WK KW GHGR LNVT K SL EES A D TF FYQ V A YDM GID RLS E WMRK FG Y G SL TG 418
Cdd:TIGR03423 317 A AL EE GVI TPE T RIYC PG YF QL G G -- R R F R C WK RG GHGR VDLR K AI EES C D VY FYQ L A LRL GID KIA E YAKR FG F G QK TG 394
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 419 IDL SE E R SG NM P T REWK M KRF KK PWY Q GDT IP V G IGQGY WTA TP V Q MNK A MMI L I N D G VVKV PHL LMTTV - VN G QK V PWK 497
Cdd:TIGR03423 395 IDL PG E K SG LV P S REWK R KRF GQ PWY P GDT LN V S IGQGY VLV TP L Q LAV A TAA L A N G G KLYK PHL VKSIE d PD G GV V RRT 474
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 498 Q PE QPPVGD I HSGYWEIAKD GM YG V A N RAN GT GHKYFA G A PYK I A A K S GTAQV FG LK AN E T Y N A HR I A ERLRDH K L MT AF 577
Cdd:TIGR03423 475 E PE VLRPLP I SPENLDVVRE GM RD V V N GPG GT ARRARL G L PYK M A G K T GTAQV VS LK QG E K Y D A EQ I P ERLRDH A L FV AF 554
570 580 590
....*....|....*....|....*....|....*...
gi 490521765 578 APYDNP QV AVA M I L E N GG A G PAV - GT I M R Q I L D HIM LG 614
Cdd:TIGR03423 555 APYDNP KI AVA V I V E H GG G G SSA a AP I A R K I M D AYL LG 592
FtsI
COG0768 Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2) [Cell ...
11-610
0e+00
Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2) [Cell cycle control, cell division, chromosome partitioning, Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440531 [Multi-domain]
Cd Length: 568
Bit Score: 636.10
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 11 TA E SA LF V RR A L VA F AGI L V L TGI L IVN L YH LQ ILRFND Y QTRSN ENRI KL VPIP PS RG I IYDRNG TP LA L N RTI Y QIEM 90
Cdd:COG0768 4 KK E KR LF R RR L L LL F LLV L L L FLL L VGR L FY LQ VVEGDE Y AELAE ENRI RT VPIP AP RG L IYDRNG NV LA T N VPV Y SLYA 83
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 91 M PE K V DSVQD T L E A L RSVVD L NDDDIANFK K ERA R S hrft SIPV K T NL TEVQV AR fa VNQYRF PGV E V KGYKR RYYPYG A 170
Cdd:COG0768 84 D PE E V KDPEE T A E K L AKLLG L DPEELRKKL K KKS R F ---- PVYL K R NL SPEEA AR -- IRALKL PGV Y V EAEYK RYYPYG E 157
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 171 ALT HV I GYV SK IN DK D verldkdgklanyaath D IGK L G I E RY YED V L H G QT G YEE VEV NN RGRVIR Q L - K E V PP QA G H D 249
Cdd:COG0768 158 LAA HV L GYV GE IN GG D ----------------- G IGK S G L E KA YED L L R G TP G KRR VEV DA RGRVIR D L g E E K PP VP G K D 220
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 250 IY LT L D LK LQ TYI E TL L QGS ------- RA AVVV T DP R TG G ILAM V S M PS YN PNLFV D G isskdysgllnd P NT PL I NRA T 322
Cdd:COG0768 221 LV LT I D SD LQ KIA E EA L KKA veeykak SG AVVV M DP K TG E ILAM A S Y PS FD PNLFV G G ------------ P DE PL R NRA V 288
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 323 QG V Y P P A ST V KP YV A VS AL SA GVI NRN T SLFD PG WWQLP G se KRY RDW KKW GHG R L NV T KS L EE S ADTF FY QV A YDM GID 402
Cdd:COG0768 289 QG T Y E P G ST F KP FT A AA AL EE GVI TPD T TFDC PG YYRVG G -- RTI RDW DRG GHG T L TL T EA L AK S SNVG FY KL A LRL GID 366
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 403 R L SEWMR KFG Y G SL TGIDL SE E R SG NM P TR ewkmkrfk K P WY Q G D T IPVG IGQG y WTA TP V Q MNK A MMILI N D GV VKV PH 482
Cdd:COG0768 367 K L YDYLK KFG L G QK TGIDL PG E A SG LL P SP -------- K R WY P G E T ATMS IGQG - LSV TP L Q LAQ A YAAIA N G GV LVK PH 437
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 483 L LMTT V - VN G QK V PWKQPEQPP V gd I HSGYW E IAKD GM Y GV A N RAN GT GHKY f A GAP Y KI A A K S GTAQV FGLKANET Y NA 561
Cdd:COG0768 438 L VKEI V d PD G EV V KEEPEVLRR V -- I SPETA E TVRE GM E GV V N EPG GT ARRA - A IPG Y RV A G K T GTAQV VDIGNGGY Y KG 514
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*..
gi 490521765 562 HR IA erlrdhk LMTA FAP Y DNP QV AVA MIL EN G G -------- A G P AVGT IM RQI L DH 610
Cdd:COG0768 515 RH IA ------- SFVG FAP A DNP RY AVA VVV EN P G ggayggtv A A P VFRE IM EAY L RL 564
Transpeptidase
pfam00905 Penicillin binding protein transpeptidase domain; The active site serine (residue 337 in Swiss: ...
271-609
5.16e-86
Penicillin binding protein transpeptidase domain; The active site serine (residue 337 in Swiss:P14677) is conserved in all members of this family.
Pssm-ID: 425939 [Multi-domain]
Cd Length: 296
Bit Score: 270.83
E-value: 5.16e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 271 AAV VV T DP R TG GI LAMV SM PSY N PN L F vdgisskdysgllndp NT PL I NRA TQGV Y P P A ST V KP YV A VS AL SA GV INRNT 350
Cdd:pfam00905 1 GSA VV L DP K TG EV LAMV GK PSY D PN G F ---------------- IG PL R NRA VTSR Y E P G ST F KP FT A LA AL DN GV LKPDE 64
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 351 SL FD PGWW Q LP G se K RYR DW KKWGH G RLNVTKS LE E S ADTFFYQV A YDM G I D R L SEWMR KFGYG SL TGI D L SE E RS G NMP 430
Cdd:pfam00905 65 TI FD WPGK Q QG G -- K SIG DW NQDQV G IGTLRQA LE Y S SNWYMQKL A QKL G A D K L RSYLK KFGYG NK TGI G L PG E NA G YLT 142
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 431 TR ewkmkrfkkp W YQ G D T IPV GIG qgy W T A TP V Q MNK A MMILI N D G VVKV PHL LMTT vvngqk VPWKQ P EQPPVGD I HSG 510
Cdd:pfam00905 143 PY ---------- W LE G A T ASF GIG --- L T I TP L Q QAQ A YAAIA N G G KLVP PHL VKSI ------ EDKVD P KVLNKLP I SKS 203
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 511 YW E IA KD GMYG V A N R an GTG HKYF A GAP YK I A A K S GTAQV F G L K ANET Y NAH riaerlr DHKLMTAF AP Y DNP QV A V A MI 590
Cdd:pfam00905 204 TA E KV KD MLRL V V N D -- GTG TGTA A VPG YK V A G K T GTAQV A G P K GGGY Y DGA ------- QIGWFVGY AP A DNP KY A F A VL 274
330 340
....*....|....*....|..
gi 490521765 591 LENGGA --- G PAVGT I MRQ IL D 609
Cdd:pfam00905 275 IDDPKR yyg G KVAAP I FKD IL E 296
PBP_dimer
pfam03717 Penicillin-binding Protein dimerization domain; This domain is found at the N terminus of ...
63-238
5.31e-53
Penicillin-binding Protein dimerization domain; This domain is found at the N terminus of Class B High Molecular Weight Penicillin-Binding Proteins. Its function has not been precisely defined, but is strongly implicated in PBP polymerization. The domain forms a largely disordered 'sugar tongs' structure.
Pssm-ID: 427460 [Multi-domain]
Cd Length: 178
Bit Score: 179.44
E-value: 5.31e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 63 PIP PS RG I IYDRNG TP LA L N RTI Y QIEMM P E K VDSVQDTLE A ------ L RSVV DL N D D D IANFKKERARSHRFTSIPV K T 136
Cdd:pfam03717 1 PIP AP RG E IYDRNG VV LA T N KPV Y SLTIT P S K LKKADALKT A lklakl L SNYE DL D D E D LTERFLKMNSYKSYYPVVI K K 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 137 NL T E VQ VAR FAV N QYRF PGV EVKGYKR RYYPYG AALT H VI GYV SK I NDKDV E RLDKD G klan Y AATHDI GK L G I E RY YE D 216
Cdd:pfam03717 81 NL S E EE VAR IEE N LLEL PGV SIETDPV RYYPYG ELAA H LL GYV GE I TEEEL E KYLDK G ---- Y SRGDLV GK S G L E KQ YE S 156
170 180
....*....|....*....|..
gi 490521765 217 VL H G QT G YEE VEV NNR GRVIR Q 238
Cdd:pfam03717 157 VL R G KD G VRQ VEV DAL GRVIR E 178
PRK15105
PRK15105 peptidoglycan synthase FtsI; Provisional
13-608
1.55e-41
peptidoglycan synthase FtsI; Provisional
Pssm-ID: 185060 [Multi-domain]
Cd Length: 578
Bit Score: 158.83
E-value: 1.55e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 13 E S A L F V -- R R AL VAFAGI L V L TGI L IVNLY h LQ ILR f N D YQT R SNEN R - IKLVPIPP SRG I I Y DR N G T PLA LNRTIYQ I E 89
Cdd:PRK15105 14 E Q A N F I sw R F AL LCGCIL L A L VFL L GRVAW - LQ VIN - P D MLV R EGDM R s LRVQEVST SRG M I T DR S G R PLA VSVPVKA I W 91
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 90 MM P EK V ----- D SV Q D TLE AL RSVVDLND D DIAN f KKERARSH RF TSIPVKT N lte VQV A RF a VNQYRF PG VEVKGYK RR 164
Cdd:PRK15105 92 AD P KE V hdagg I SV D D RWK AL ADALNIPL D QLSA - RINANPKG RF IYLARQV N --- PDM A DY - IKKLKL PG IHLREES RR 166
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 165 YYP Y G AALT H V IG y VSKINDKDV E rldkdgklanyaathdigkl G I E RYYEDV L H GQ T G YEE V EVNNR GRVI RQLKEVPP 244
Cdd:PRK15105 167 YYP S G EVTA H L IG - FTNVDSQGI E -------------------- G V E KSFDKW L T GQ P G ERI V RKDRY GRVI EDISSTDS 225
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 245 QA G H DIY L TL D LK LQ TYIETL L QGSR A ------- AV V VT D PR TG GI LAM VSM PSYNPN lfvdgisskdys G L LND P NTPL 317
Cdd:PRK15105 226 QA A H NLA L SI D ER LQ ALVYRE L NNAV A fnkaesg SA V LV D VN TG EV LAM ANS PSYNPN ------------ N L SGT P KDAM 293
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 318 I NRA TQG V YP P A STVKP Y V AVS AL SA GV INR N TS L f DPGWWQLP G S E ---- K RY RD wkkwghgr L NV T KS L EE S ADTFFY 393
Cdd:PRK15105 294 R NRA ITD V FE P G STVKP M V VMT AL QR GV VKE N SV L - NTVPYRIN G H E ikdv A RY SE -------- L TL T GV L QK S SNVGVS 364
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 394 QV A YD M GIDR L SEWMRK FG Y G SL T GID L SE ERSG NM P T rewkmkrf K KP W YQGDTIPVGI G Q G Y w TA TP V Q MNKAMMILI 473
Cdd:PRK15105 365 KL A LA M PSSA L VDTYSR FG L G KA T NLG L VG ERSG LY P Q -------- K QR W SDIERATFSF G Y G L - MV TP L Q LARVYATIG 435
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 474 ND G VVK v P h L LM T T V --- V N G QK V pwk Q PE QPPVGDI H S gyweiakdg M YG VA nr AN G T G HKYF A GAP Y K IA A K S GTA QV 550
Cdd:PRK15105 436 SY G IYR - P - L SI T K V dpp V P G ER V --- F PE SIVRTVV H M --------- M ES VA -- LP G G G GVKA A IKG Y R IA I K T GTA KK 499
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 490521765 551 F G LKAN et Y NAHR IA erlrdhkl M TA - F AP YDN P QV A VAMILEN ------- GGA -- G P AV G T IM RQI L 608
Cdd:PRK15105 500 V G PDGR -- Y INKY IA -------- Y TA g V AP ASQ P RF A LVVVIND pqagkyy GGA vs A P VF G A IM GGV L 557
MrcB
COG0744 Penicillin-binding protein 1B/1F, peptidoglycan transglycosylase/transpeptidase [Cell wall ...
235-621
1.21e-22
Penicillin-binding protein 1B/1F, peptidoglycan transglycosylase/transpeptidase [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440507 [Multi-domain]
Cd Length: 630
Bit Score: 102.69
E-value: 1.21e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 235 V I R Q L K E ----- VPPQA G HD IY L TLD L KLQ TYI E TLLQ --------- G SR AA V VV T DP R TG GI LAMV SMPS Y NPNL F vdg 300
Cdd:COG0744 277 V R R E L E E llged DLYRG G LK IY T TLD P KLQ KAA E KAVK nvlpegkpg G LQ AA L VV V DP K TG EV LAMV GGRD Y GKSQ F --- 353
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 301 isskdysgllndpntpli NRATQ GVYP P A ST V KP Y V AVS AL SA G v INRN T SL ------ F DP G W W QLPGSEK RY rdwkkwg 374
Cdd:COG0744 354 ------------------ NRATQ AKRQ P G ST F KP F V YAA AL EQ G - YTPA T TV ddepvt F PG G G W SPKNYDG RY ------- 407
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 375 H G RLNVTKS L EE S AD T FFYQV A YDM G I D RLSEWM R KF G ygsltgidlseersgnmptrewkmkr FKK P WYQGDTIPV G IG 454
Cdd:COG0744 408 R G PVTLREA L AN S LN T PAVRL A QEV G L D KVVDTA R RL G -------------------------- ITS P LDPNPSLAL G TS 461
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 455 qgyw TAT P VQ M NK A MMILI N D GV VKV PH LL m T T V V -- N G QKVPWKQ P EQPP V GDIHSG Y we IAK D GMYG V ANR an GTG HK 532
Cdd:COG0744 462 ---- EVS P LE M AS A YATFA N G GV YVE PH AI - T K V T da D G KVLYEAK P KCEQ V ISPEVA Y -- LMT D MLQD V VTS -- GTG RA 532
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 533 - YFA G A P yk I A A K S GT AQVF glkanetynahriaerl RD hklm TA F AP Y D n PQ VAV A ---------- M ILEN GG AG PA vg 601
Cdd:COG0744 533 a RLP G R P -- V A G K T GT TNDN ----------------- RD ---- AW F VG Y T - PQ LVT A vwvgnddnsp M GYVT GG SL PA -- 586
410 420
....*....|....*....|
gi 490521765 602 T I M R QILDHIML G DNNTEL P 621
Cdd:COG0744 587 P I W R DFMEAALE G LPVEDF P 606
PbpC
COG4953 Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell wall/membrane/envelope ...
234-354
1.73e-04
Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443980 [Multi-domain]
Cd Length: 773
Bit Score: 44.82
E-value: 1.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490521765 234 R VI RQL kevp P QAGH d I YL TLD LK LQ T -------- Y IET L L Q GSR -- AAV V V T D P RTG GI LA M V SMPSYNPNL --- F VD G 300
Cdd:COG4953 263 R LL RQL ---- P GGTR - I RT TLD AG LQ R rlerlvrr Y VRR L K Q NGI hn AAV L V V D N RTG EV LA Y V GSADFFDAS rqg Q VD M 337
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 490521765 301 ISSK dysgllndpntplin R A tqgvyp P A ST V KP YVAVS AL SA G V I NRN T S L F D 354
Cdd:COG4953 338 VRAL --------------- R S ------ P G ST L KP FLYGL AL DQ G L I HPE T L L A D 370
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
