NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|490534273|ref|WP_004399444|]
View 

MULTISPECIES: DUF2508 family protein [Thermoanaerobacter]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF2508 super family cl11301
Protein of unknown function (DUF2508); This family is conserved in Firmicutes. Several members ...
 23-82 5.15e-05

Protein of unknown function (DUF2508); This family is conserved in Firmicutes. Several members are annotated as being the protein YaaL. The function is not known.


The actual alignment was detected with superfamily member pfam10704:

Pssm-ID: 431448  Cd Length: 71  Bit Score: 37.54  E-value: 5.15e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 490534273  23 ENYQLVNEVRQTIKELKDAEIYFQSVTDPDlvDYAIYRLESLKRKYIYLLKKAKKEGINF 82
Cdd:pfam10704 14 EDEELLELIEKTKREWESAKSLFENSVDLS--DELIYQLKLAEAKYFFLLREAKKRNIKV 71
 
Name Accession Description Interval E-value
DUF2508 pfam10704
Protein of unknown function (DUF2508); This family is conserved in Firmicutes. Several members ...
 23-82 5.15e-05

Protein of unknown function (DUF2508); This family is conserved in Firmicutes. Several members are annotated as being the protein YaaL. The function is not known.


Pssm-ID: 431448  Cd Length: 71  Bit Score: 37.54  E-value: 5.15e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 490534273  23 ENYQLVNEVRQTIKELKDAEIYFQSVTDPDlvDYAIYRLESLKRKYIYLLKKAKKEGINF 82
Cdd:pfam10704 14 EDEELLELIEKTKREWESAKSLFENSVDLS--DELIYQLKLAEAKYFFLLREAKKRNIKV 71
 
Name Accession Description Interval E-value
DUF2508 pfam10704
Protein of unknown function (DUF2508); This family is conserved in Firmicutes. Several members ...
 23-82 5.15e-05

Protein of unknown function (DUF2508); This family is conserved in Firmicutes. Several members are annotated as being the protein YaaL. The function is not known.


Pssm-ID: 431448  Cd Length: 71  Bit Score: 37.54  E-value: 5.15e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 490534273  23 ENYQLVNEVRQTIKELKDAEIYFQSVTDPDlvDYAIYRLESLKRKYIYLLKKAKKEGINF 82
Cdd:pfam10704 14 EDEELLELIEKTKREWESAKSLFENSVDLS--DELIYQLKLAEAKYFFLLREAKKRNIKV 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH