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Conserved domains on  [gi|490574286|ref|WP_004439306|]
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MULTISPECIES: type II and III secretion system protein family protein [Agrobacterium]

Protein Classification

type II and III secretion system protein family protein( domain architecture ID 11471920)

type II and III secretion system protein family protein similar to Sinorhizobium fredii Y4xJ

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CpaC COG4964
Flp pilus assembly protein, secretin CpaC [Intracellular trafficking, secretion, and vesicular ...
 6-527 4.65e-179

Flp pilus assembly protein, secretin CpaC [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


:

Pssm-ID: 443990 [Multi-domain]  Cd Length: 456  Bit Score: 511.34  E-value: 4.65e-179
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286   6 MTRRLAKDLRSSFVGGLAFCVAfsgvpGPhspeflrfseAKAQSASIVriteSGSGIRKRLKLGLNKALVIDLPEDAHDI 85
Cdd:COG4964    1 MKRRLRRLLAAALLALALLALA-----AP----------APAQAAVRV----SDAAAARTLSLGVGKSRVLELPRPIKRV 61

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286  86 LVADPSLADAVTRTSKRIYLFGKTVGQTNIFIFGEGGREIVSLDLEVERDIVGLEANIRRFIPESDIKVEIVSDNIVLTG 165
Cdd:COG4964   62 AVGNPEIADVVVLSPRELYVFGKKPGTTTLTVWDADGRQIASLDVRVGRDLAGLRERLRRLLPGEGIRVRAVGDRVVLSG 141

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286 166 SVRTPQDSARAVQLAEAFLKGGeattrnisltggnnggdaaifaenrqvsQIVNMLTIEGEDQVTLKVTVAEVSRQVLKQ 245
Cdd:COG4964  142 TVSSAADADRAVDLAEAYAGGG----------------------------KVINLLTVGGPQQVMLKVRVAEVSRSVLKQ 193

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286 246 LGFNGSISSSTSNNGFEFSNPSNLGNAIDSATRIASGAIGSGSLRFASYLNAMEQAGVMRTLAEPSLTAISGEQAKFYVG 325
Cdd:COG4964  194 LGINWSGLGSSGGFSFGLLTGGLLSGLLGGATAGAFSGFGFGNASISATLDALEQNGLARVLAEPNLTALSGETASFLAG 273

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286 326 GDFRIAAEQdvsldkDTGIATVkretETVDYGITLNFRPVVLSPGRISLKIETNVSEPTYEGNVVTGNYgrNIPGstyms 405
Cdd:COG4964  274 GEFPIPVAQ------GDGTITV----EYKEFGVSLNFTPTVLSNGRISLKVAPEVSELDPSNAVTLNGI--TIPG----- 336

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286 406 VRKRETSTTVELPSGGSIVIAGLVQDNIRQAMSGLPGMSKIPIFGTLFRSKDFLRNETELVIIATPYLVRPVARNQIARP 485
Cdd:COG4964  337 LTTRRAETTVELRSGQSFAIAGLLSSNTRQNVSKVPGLGDIPILGALFRSRSFQRNETELVIIVTPYLVKPVSPEALALP 416

                        490       500       510       520
                 ....*....|....*....|....*....|....*....|..
gi 490574286 486 DDNFNPENDAAMYFMNRVNKVYGRKDqvQAAPYQGSVGFIYK 527
Cdd:COG4964  417 TDRFRPPSDLELFLLGRLERPYPTPA--AETAAQGSYGFILD 456
 
Name Accession Description Interval E-value
CpaC COG4964
Flp pilus assembly protein, secretin CpaC [Intracellular trafficking, secretion, and vesicular ...
 6-527 4.65e-179

Flp pilus assembly protein, secretin CpaC [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 443990 [Multi-domain]  Cd Length: 456  Bit Score: 511.34  E-value: 4.65e-179
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286   6 MTRRLAKDLRSSFVGGLAFCVAfsgvpGPhspeflrfseAKAQSASIVriteSGSGIRKRLKLGLNKALVIDLPEDAHDI 85
Cdd:COG4964    1 MKRRLRRLLAAALLALALLALA-----AP----------APAQAAVRV----SDAAAARTLSLGVGKSRVLELPRPIKRV 61

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286  86 LVADPSLADAVTRTSKRIYLFGKTVGQTNIFIFGEGGREIVSLDLEVERDIVGLEANIRRFIPESDIKVEIVSDNIVLTG 165
Cdd:COG4964   62 AVGNPEIADVVVLSPRELYVFGKKPGTTTLTVWDADGRQIASLDVRVGRDLAGLRERLRRLLPGEGIRVRAVGDRVVLSG 141

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286 166 SVRTPQDSARAVQLAEAFLKGGeattrnisltggnnggdaaifaenrqvsQIVNMLTIEGEDQVTLKVTVAEVSRQVLKQ 245
Cdd:COG4964  142 TVSSAADADRAVDLAEAYAGGG----------------------------KVINLLTVGGPQQVMLKVRVAEVSRSVLKQ 193

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286 246 LGFNGSISSSTSNNGFEFSNPSNLGNAIDSATRIASGAIGSGSLRFASYLNAMEQAGVMRTLAEPSLTAISGEQAKFYVG 325
Cdd:COG4964  194 LGINWSGLGSSGGFSFGLLTGGLLSGLLGGATAGAFSGFGFGNASISATLDALEQNGLARVLAEPNLTALSGETASFLAG 273

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286 326 GDFRIAAEQdvsldkDTGIATVkretETVDYGITLNFRPVVLSPGRISLKIETNVSEPTYEGNVVTGNYgrNIPGstyms 405
Cdd:COG4964  274 GEFPIPVAQ------GDGTITV----EYKEFGVSLNFTPTVLSNGRISLKVAPEVSELDPSNAVTLNGI--TIPG----- 336

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286 406 VRKRETSTTVELPSGGSIVIAGLVQDNIRQAMSGLPGMSKIPIFGTLFRSKDFLRNETELVIIATPYLVRPVARNQIARP 485
Cdd:COG4964  337 LTTRRAETTVELRSGQSFAIAGLLSSNTRQNVSKVPGLGDIPILGALFRSRSFQRNETELVIIVTPYLVKPVSPEALALP 416

                        490       500       510       520
                 ....*....|....*....|....*....|....*....|..
gi 490574286 486 DDNFNPENDAAMYFMNRVNKVYGRKDqvQAAPYQGSVGFIYK 527
Cdd:COG4964  417 TDRFRPPSDLELFLLGRLERPYPTPA--AETAAQGSYGFILD 456
Secretin pfam00263
Bacterial type II and III secretion system protein;
297-474 9.01e-37

Bacterial type II and III secretion system protein;


Pssm-ID: 459738 [Multi-domain]  Cd Length: 159  Bit Score: 133.41  E-value: 9.01e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286  297 AMEQAGVMRTLAEPSLTAISGEQAKFYVGGDFRIAAEQdvsldkdTGIATVKRETETVDYGITLNFRPVVLSPGRISLKI 376
Cdd:pfam00263   1 ALEQNGKAKILSSPSLLTLDNQEASIKVGQEVPVPTTS-------TTGGTTTTTVEFKDAGLSLKVTPQVTPDGTITLKI 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286  377 ETNVSEPTYEGNVVtgnygrnIPgstymSVRKRETSTTVELPSGGSIVIAGLVQDNIRQAMSGLPGMSKIPIFGTLFRSK 456
Cdd:pfam00263  74 NPEVSSPDGNGGNG-------VP-----TINTREISTTVRVKDGQTVVIGGLIQEEDSETESKVPLLGDIPLLGALFRST 141

                         170
                  ....*....|....*...
gi 490574286  457 DFLRNETELVIIATPYLV 474
Cdd:pfam00263 142 SKSKEKTELLIFITPRIV 159
type_II_gspD TIGR02517
type II secretion system protein D; In Gram-negative bacteria, proteins that have first ...
 163-475 8.96e-26

type II secretion system protein D; In Gram-negative bacteria, proteins that have first crossed the inner member by Sec-dependent protein transport can be exported across the outer membrane by type II secretion, also called the main terminal branch of the general secretion pathway. Members of this family are general secretion pathway protein D. In Yersinia enterocolitica, a second member of this family is part of a novel second type II secretion system specifically associated with virulence (See ). This family is closely homologous to the type IV pilus outer membrane secretin PilQ (TIGR02515) and to the type III secretion system pore YscC/HrcC (TIGR02516). [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274175 [Multi-domain]  Cd Length: 594  Bit Score: 111.32  E-value: 8.96e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286  163 LTGSVRTPQDSARAVQLAEAFLKGGEATTRNISLTGGNNGGDAAIFAEN-----------RQVSQIVNMLTIEgEDQVTL 231
Cdd:TIGR02517 256 VFGGGGNEPGSSSSPGLGGAVNPGGSQSAQAASSASGGSVSGSADKATNsliitaspqdyKNIRAVIKQLDVR-RAQVLV 334

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286  232 KVTVAEVSRQVLKQLG------FNGSISSSTSNNGFEFSNPSNLGNAIDSATRIASGAIGSGSL-----------RFASY 294
Cdd:TIGR02517 335 EAIIVEVSLDDALELGvqwliaGTGGGVNFSTGSPNSGSLLGASASAISLGSAGIGLLVTSSSTtsgvggtgggpNLGVL 414

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286  295 LNAMEQAGVMRTLAEPSLTAISGEQAKFYVGGDFRIAAEQDVSLDKDTG---IATVKREtetvDYGITLNFRPVVLSPGR 371
Cdd:TIGR02517 415 LNALKQDTGFNVLSTPSLLTLDNQEAEINVGQEVPVLTGSYNTGTGGTNanpFNTYQRK----DVGIKLKVTPQINEGGT 490

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286  372 ISLKIETNVSeptyegNVVTGNYGRNIPGSTYmsvRKRETSTTVELPSGGSIVIAGLVQDNIRQAMSGLPGMSKIPIFGT 451
Cdd:TIGR02517 491 VRLEIYQEVS------SVAPTTVGSAASGPTF---NKREIKTVVLVDNGDTVVLGGLIQDKTSESVTKVPLLGDIPVLGW 561

                         330       340
                  ....*....|....*....|....
gi 490574286  452 LFRSKDFLRNETELVIIATPYLVR 475
Cdd:TIGR02517 562 LFRSTTTERTKTNLMVFITPRIIR 585
IV PHA00019
phage assembly protein
 153-475 7.22e-20

phage assembly protein


Pssm-ID: 222772 [Multi-domain]  Cd Length: 428  Bit Score: 92.18  E-value: 7.22e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286 153 KVEIVSDNIVLTGSVrTPQDSARAVQLAEAFLKGGEATTRNISLTGGNN----GGDAAIFAENRQVSQIVNMLTiegeDQ 228
Cdd:PHA00019 124 APEVPNDLIVRTFNI-NNVRASDLLPLVKIFVKSNGAPGGSVTDLPGTNslvvSGSASQLPALADFISAIDVPR----RQ 198

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286 229 VTLKVTVAEVSRQVLKQLGFN-GSISSSTSNNGFefsNPSNLGNAIDSATriASGAIGSGSLrFASYLNAMEQAGVMRTL 307
Cdd:PHA00019 199 VLIEALIFETSLGDGVDLSFAaGLASGGKVAGGF---NTARLTTVLSSAG--GSFGIFNGNV-LGLSVKALENSSNSRVL 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286 308 AEPSLTAISGEQAKFYVGGD--FRIAAEQDVSLDKDTGIATVKREtetvDYGITLNFRPVVLSPGRISLKIETNVSEPTY 385
Cdd:PHA00019 273 SRPRILTLSGQSGYISVGQNvpFVTGRVTGEAANVNNPFQTIERK----DVGVSLEVTPVVMGDGQLVLDIDTKADSLSD 348

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286 386 EgnvvtgNYGRNIPgstymsVRKRETSTTVELPSGGSIVIAGLVQDNIRQAMSGLPGMSKIPIFGTLFRSKDFLRNETEL 465
Cdd:PHA00019 349 S------TIASDII------TNQRSLQTTVQVKDGQTLLLGGLISSNNTDGDSSVPFLSKIPLIGWLFRSKSDSNEQRTL 416

                        330
                 ....*....|
gi 490574286 466 VIIATPYLVR 475
Cdd:PHA00019 417 YVLLTARVIK 426
 
Name Accession Description Interval E-value
CpaC COG4964
Flp pilus assembly protein, secretin CpaC [Intracellular trafficking, secretion, and vesicular ...
 6-527 4.65e-179

Flp pilus assembly protein, secretin CpaC [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 443990 [Multi-domain]  Cd Length: 456  Bit Score: 511.34  E-value: 4.65e-179
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286   6 MTRRLAKDLRSSFVGGLAFCVAfsgvpGPhspeflrfseAKAQSASIVriteSGSGIRKRLKLGLNKALVIDLPEDAHDI 85
Cdd:COG4964    1 MKRRLRRLLAAALLALALLALA-----AP----------APAQAAVRV----SDAAAARTLSLGVGKSRVLELPRPIKRV 61

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286  86 LVADPSLADAVTRTSKRIYLFGKTVGQTNIFIFGEGGREIVSLDLEVERDIVGLEANIRRFIPESDIKVEIVSDNIVLTG 165
Cdd:COG4964   62 AVGNPEIADVVVLSPRELYVFGKKPGTTTLTVWDADGRQIASLDVRVGRDLAGLRERLRRLLPGEGIRVRAVGDRVVLSG 141

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286 166 SVRTPQDSARAVQLAEAFLKGGeattrnisltggnnggdaaifaenrqvsQIVNMLTIEGEDQVTLKVTVAEVSRQVLKQ 245
Cdd:COG4964  142 TVSSAADADRAVDLAEAYAGGG----------------------------KVINLLTVGGPQQVMLKVRVAEVSRSVLKQ 193

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286 246 LGFNGSISSSTSNNGFEFSNPSNLGNAIDSATRIASGAIGSGSLRFASYLNAMEQAGVMRTLAEPSLTAISGEQAKFYVG 325
Cdd:COG4964  194 LGINWSGLGSSGGFSFGLLTGGLLSGLLGGATAGAFSGFGFGNASISATLDALEQNGLARVLAEPNLTALSGETASFLAG 273

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286 326 GDFRIAAEQdvsldkDTGIATVkretETVDYGITLNFRPVVLSPGRISLKIETNVSEPTYEGNVVTGNYgrNIPGstyms 405
Cdd:COG4964  274 GEFPIPVAQ------GDGTITV----EYKEFGVSLNFTPTVLSNGRISLKVAPEVSELDPSNAVTLNGI--TIPG----- 336

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286 406 VRKRETSTTVELPSGGSIVIAGLVQDNIRQAMSGLPGMSKIPIFGTLFRSKDFLRNETELVIIATPYLVRPVARNQIARP 485
Cdd:COG4964  337 LTTRRAETTVELRSGQSFAIAGLLSSNTRQNVSKVPGLGDIPILGALFRSRSFQRNETELVIIVTPYLVKPVSPEALALP 416

                        490       500       510       520
                 ....*....|....*....|....*....|....*....|..
gi 490574286 486 DDNFNPENDAAMYFMNRVNKVYGRKDqvQAAPYQGSVGFIYK 527
Cdd:COG4964  417 TDRFRPPSDLELFLLGRLERPYPTPA--AETAAQGSYGFILD 456
PulD COG1450
Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, ...
 212-481 2.83e-45

Type II secretory pathway component GspD/PulD (secretin) [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441059 [Multi-domain]  Cd Length: 333  Bit Score: 162.01  E-value: 2.83e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286 212 RQVSQIVNMLTIEgEDQVTLKVTVAEVSRQVLKQLGFNGSISSStSNNGFEFSNPSNLGNAIDSATRIASGAIG-SGSLR 290
Cdd:COG1450   65 REIEELIEQLDVP-RRQVLIEAKIVEVSLSDLRELGIDWSALGG-NGGGVNFGGTGSLGSLAAAGSLGGGLNLGlLGGGN 142

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286 291 FASYLNAMEQAGVMRTLAEPSLTAISGEQAKFYVGGDFRIAAEQDVSldkdTGIATVKRETETVDYGITLNFRPVVLSPG 370
Cdd:COG1450  143 FGALLNALESNGDANVLSSPSILTLNNQEAVIKVGQTVPYVTGSTTT----SSTGNPTTTIEYVDVGITLKVTPQINEDG 218

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286 371 RISLKIETNVSEPTyeGNVVTGNYGrnIPgstymSVRKRETSTTVELPSGGSIVIAGLVQDNIRQAMSGLPGMSKIPIFG 450
Cdd:COG1450  219 TVTLDINPEVSSVT--GSTTGGGNG--LP-----TINKREISTTVRVKDGQTVVLGGLIRDEESESESKVPLLGDIPLLG 289

                        250       260       270
                 ....*....|....*....|....*....|.
gi 490574286 451 TLFRSKDFLRNETELVIIATPYLVRPVARNQ 481
Cdd:COG1450  290 RLFRSTSKSKEKTELVIFITPTIIRDGEDAQ 320
Secretin pfam00263
Bacterial type II and III secretion system protein;
297-474 9.01e-37

Bacterial type II and III secretion system protein;


Pssm-ID: 459738 [Multi-domain]  Cd Length: 159  Bit Score: 133.41  E-value: 9.01e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286  297 AMEQAGVMRTLAEPSLTAISGEQAKFYVGGDFRIAAEQdvsldkdTGIATVKRETETVDYGITLNFRPVVLSPGRISLKI 376
Cdd:pfam00263   1 ALEQNGKAKILSSPSLLTLDNQEASIKVGQEVPVPTTS-------TTGGTTTTTVEFKDAGLSLKVTPQVTPDGTITLKI 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286  377 ETNVSEPTYEGNVVtgnygrnIPgstymSVRKRETSTTVELPSGGSIVIAGLVQDNIRQAMSGLPGMSKIPIFGTLFRSK 456
Cdd:pfam00263  74 NPEVSSPDGNGGNG-------VP-----TINTREISTTVRVKDGQTVVIGGLIQEEDSETESKVPLLGDIPLLGALFRST 141

                         170
                  ....*....|....*...
gi 490574286  457 DFLRNETELVIIATPYLV 474
Cdd:pfam00263 142 SKSKEKTELLIFITPRIV 159
type_II_gspD TIGR02517
type II secretion system protein D; In Gram-negative bacteria, proteins that have first ...
 163-475 8.96e-26

type II secretion system protein D; In Gram-negative bacteria, proteins that have first crossed the inner member by Sec-dependent protein transport can be exported across the outer membrane by type II secretion, also called the main terminal branch of the general secretion pathway. Members of this family are general secretion pathway protein D. In Yersinia enterocolitica, a second member of this family is part of a novel second type II secretion system specifically associated with virulence (See ). This family is closely homologous to the type IV pilus outer membrane secretin PilQ (TIGR02515) and to the type III secretion system pore YscC/HrcC (TIGR02516). [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274175 [Multi-domain]  Cd Length: 594  Bit Score: 111.32  E-value: 8.96e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286  163 LTGSVRTPQDSARAVQLAEAFLKGGEATTRNISLTGGNNGGDAAIFAEN-----------RQVSQIVNMLTIEgEDQVTL 231
Cdd:TIGR02517 256 VFGGGGNEPGSSSSPGLGGAVNPGGSQSAQAASSASGGSVSGSADKATNsliitaspqdyKNIRAVIKQLDVR-RAQVLV 334

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286  232 KVTVAEVSRQVLKQLG------FNGSISSSTSNNGFEFSNPSNLGNAIDSATRIASGAIGSGSL-----------RFASY 294
Cdd:TIGR02517 335 EAIIVEVSLDDALELGvqwliaGTGGGVNFSTGSPNSGSLLGASASAISLGSAGIGLLVTSSSTtsgvggtgggpNLGVL 414

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286  295 LNAMEQAGVMRTLAEPSLTAISGEQAKFYVGGDFRIAAEQDVSLDKDTG---IATVKREtetvDYGITLNFRPVVLSPGR 371
Cdd:TIGR02517 415 LNALKQDTGFNVLSTPSLLTLDNQEAEINVGQEVPVLTGSYNTGTGGTNanpFNTYQRK----DVGIKLKVTPQINEGGT 490

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286  372 ISLKIETNVSeptyegNVVTGNYGRNIPGSTYmsvRKRETSTTVELPSGGSIVIAGLVQDNIRQAMSGLPGMSKIPIFGT 451
Cdd:TIGR02517 491 VRLEIYQEVS------SVAPTTVGSAASGPTF---NKREIKTVVLVDNGDTVVLGGLIQDKTSESVTKVPLLGDIPVLGW 561

                         330       340
                  ....*....|....*....|....
gi 490574286  452 LFRSKDFLRNETELVIIATPYLVR 475
Cdd:TIGR02517 562 LFRSTTTERTKTNLMVFITPRIIR 585
IV PHA00019
phage assembly protein
 153-475 7.22e-20

phage assembly protein


Pssm-ID: 222772 [Multi-domain]  Cd Length: 428  Bit Score: 92.18  E-value: 7.22e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286 153 KVEIVSDNIVLTGSVrTPQDSARAVQLAEAFLKGGEATTRNISLTGGNN----GGDAAIFAENRQVSQIVNMLTiegeDQ 228
Cdd:PHA00019 124 APEVPNDLIVRTFNI-NNVRASDLLPLVKIFVKSNGAPGGSVTDLPGTNslvvSGSASQLPALADFISAIDVPR----RQ 198

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286 229 VTLKVTVAEVSRQVLKQLGFN-GSISSSTSNNGFefsNPSNLGNAIDSATriASGAIGSGSLrFASYLNAMEQAGVMRTL 307
Cdd:PHA00019 199 VLIEALIFETSLGDGVDLSFAaGLASGGKVAGGF---NTARLTTVLSSAG--GSFGIFNGNV-LGLSVKALENSSNSRVL 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286 308 AEPSLTAISGEQAKFYVGGD--FRIAAEQDVSLDKDTGIATVKREtetvDYGITLNFRPVVLSPGRISLKIETNVSEPTY 385
Cdd:PHA00019 273 SRPRILTLSGQSGYISVGQNvpFVTGRVTGEAANVNNPFQTIERK----DVGVSLEVTPVVMGDGQLVLDIDTKADSLSD 348

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286 386 EgnvvtgNYGRNIPgstymsVRKRETSTTVELPSGGSIVIAGLVQDNIRQAMSGLPGMSKIPIFGTLFRSKDFLRNETEL 465
Cdd:PHA00019 349 S------TIASDII------TNQRSLQTTVQVKDGQTLLLGGLISSNNTDGDSSVPFLSKIPLIGWLFRSKSDSNEQRTL 416

                        330
                 ....*....|
gi 490574286 466 VIIATPYLVR 475
Cdd:PHA00019 417 YVLLTARVIK 426
type_III_yscC TIGR02516
type III secretion outer membrane pore, YscC/HrcC family; A number of proteins homologous to ...
 228-476 1.25e-18

type III secretion outer membrane pore, YscC/HrcC family; A number of proteins homologous to the type IV pilus secretin PilQ (TIGR02515) are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). The clade described by this model contains the outer membrane pore proteins of bacterial type III secretion systems, typified by YscC for animal pathogens and HrcC for plant pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274174 [Multi-domain]  Cd Length: 462  Bit Score: 88.59  E-value: 1.25e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286  228 QVTLKVTVAEVSRQVLKQLGFNGSISSSTSNN--GFEFSNPSNLGNAIDSATriasgaiGSGSLRFASYLNAMEQAGVMR 305
Cdd:TIGR02516 235 LIEISAWIIDIDASDLSQLGVDWQATLGAGDRqtGFNVSAGAGLGATGSSIV-------TSDGDYFMARVNALEQTGKAK 307

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286  306 TLAEPSLTAISGEQA------KFYVggdfRIAAEQDVSLDKdtgiatvkretetVDYGITLNFRPVVLSPGRISLKIETN 379
Cdd:TIGR02516 308 IVSRPSVLTLENVQAvldnnrTFYV----KVSGERVADLES-------------VTAGTSLRVTPRVIGDEGAQRQIKLN 370

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286  380 VSEPTYEGNVVTGNYGRNIPGstymsVRKRETSTTVELPSGGSIVIAGLVQDNIRQAMSGLPGMSKIPIFGTLFRSKDFL 459
Cdd:TIGR02516 371 VDIEDGQQKTDGTSTVDALPE-----IKRTEINTQARVGHGQSLLIGGYYRDESADSVDGIPLLGDIPLLGNLFRSTSKE 445

                         250
                  ....*....|....*..
gi 490574286  460 RNETELVIIATPYLVRP 476
Cdd:TIGR02516 446 KSRVVRLFLITPKIVRD 462
T2SS-T3SS_pil_N pfam13629
Pilus formation protein N terminal region;
65-133 6.49e-17

Pilus formation protein N terminal region;


Pssm-ID: 433362  Cd Length: 72  Bit Score: 75.31  E-value: 6.49e-17
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 490574286   65 RLKLGLNKALVIDLPEDAHDILVADPSLADAVTRTSKRIYLFGKTVGQTNIFIFGEGGREIVSLDLEVE 133
Cdd:pfam13629   4 TLTLEVGKSRLLRLPEPIARVAVGNPKIADVTVLSPRTLYLTGKSVGTTNLIVWDANGRVILVLDVVVT 72
hofQ PRK13568
DNA uptake porin HofQ;
228-475 2.46e-12

DNA uptake porin HofQ;


Pssm-ID: 237430 [Multi-domain]  Cd Length: 381  Bit Score: 68.61  E-value: 2.46e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286 228 QVTLKVTVAEVSRQVLKQLGFN-GSISSSTSNNGFEFSNpSNLGNAIDSATrIASG---AIGSGSLrFASYLNAMEQAGV 303
Cdd:PRK13568 149 QVQLAAHIVTISSESLQELGVRwGMGEGKQGNTALRIND-FNVNLPLPNPA-ASAGfhlARLGGRL-LDLELSALEQENQ 225

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286 304 MRTLAEPSLTAisgeqakfyvggdfriAAEQDVSLDKDTGI----ATVKRETETVDYG---ITLNFRPVVLSPGRISLKI 376
Cdd:PRK13568 226 VDIIASPRLFT----------------SHQQTASIKQGTEIpytvSSGKSGSTSIEFKeavLGMEVTPKILRNGRITLKL 289

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286 377 ETNVSEPtyegnvvtgnyGRNIP--GSTYMSVRKRETSTTVELPSGGSIVIAGLVQDNIRQAMSGLPGMSKIPIFGTLFR 454
Cdd:PRK13568 290 KISQNMP-----------GRTIKrgEGEMLAIDKQEIQTQVTVKDGETIVLGGIFQQQKRQSVNKVPLLGDIPLLGALFR 358

                        250       260
                 ....*....|....*....|.
gi 490574286 455 SKDFLRNETELVIIATPYLVR 475
Cdd:PRK13568 359 QDTQQQSRRELVIFITPKLIS 379
HofQ COG4796
Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular ...
 228-475 1.04e-11

Type II secretory pathway, component HofQ [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443824 [Multi-domain]  Cd Length: 570  Bit Score: 67.19  E-value: 1.04e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286 228 QVTLKVTVAEVSRQVLKQLG--FNGSISSSTSNNGFEFSNpsNLGNAIDSATRIASG-------AIGSGSLRF------A 292
Cdd:COG4796  323 QVLIEARIVEASDSFSRELGvrWGGSGANGTGNNRGGIGG--SLNGTTAGTPLLPDGlnvnlpaANPAGSLGLtlaklgG 400

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286 293 SY-----LNAMEQAGVMRTLAEPSLTAISGEQAKFYVGGD--FRIAAeqdvsldkDTGIATVkretETVDYGITLNFRPV 365
Cdd:COG4796  401 GRlldleLSALEAEGKGEIISSPRVITADQQEASIEQGTEipYQESS--------SSGATSV----EFKEAVLSLEVTPQ 468

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286 366 VLSPGRISLKIETNVSEPtyegnvvtgnyGRNIPGSTyMSVRKRETSTTVELPSGGSIVIAGLVQDNIRQAMSGLPGMSK 445
Cdd:COG4796  469 ITPDGRIILDLDVSKDSP-----------GETVAGGV-PAIDTKEIKTQVLVENGETVVLGGIYEQTESNSVDKVPFLGD 536

                        250       260       270
                 ....*....|....*....|....*....|
gi 490574286 446 IPIFGTLFRSKDFLRNETELVIIATPYLVR 475
Cdd:COG4796  537 IPLLGWLFKNTTKTDEKRELLIFITPRIVK 566
hofQ PRK10560
outer membrane porin HofQ; Provisional
 228-474 1.51e-09

outer membrane porin HofQ; Provisional


Pssm-ID: 182549 [Multi-domain]  Cd Length: 386  Bit Score: 59.83  E-value: 1.51e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286 228 QVTLKVTVAEVSRQVLKQLGFNGSISSSTSNNGFefSNPSNLGN--AIDSATRIASGAIGSGSLRFASY-LNAMEQAGVM 304
Cdd:PRK10560 154 QVELAAHIVTINEKSLRELGVKWTLADAQQAGGV--GQVTTLGSdlSVATATTRVGFNIGRINGRLLDLeLSALEQKQQL 231

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286 305 RTLAEPSLTAISGEQAKFYVGGDFriaaEQDVSlDKDTGIATVKRETETVDYGITlnfrPVVLSPGRISLKIETNVSEPt 384
Cdd:PRK10560 232 DIIASPRLLASHLQPASIKQGSEI----PYQVS-SGESGATSVEFKEAVLGMEVT----PTVLQKGRIRLKLHISQNVP- 301

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286 385 yeGNVVTGNYGRnipgstYMSVRKRETSTTVELPSGGSIVIAGLVQDNIRQAMSGLPGMSKIPIFGTLFRsKDFLRNET- 463
Cdd:PRK10560 302 --GQVLQQADGE------VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGQDSVPLLGDIPWLGQLFR-HDGKEDERr 372

                        250
                 ....*....|.
gi 490574286 464 ELVIIATPYLV 474
Cdd:PRK10560 373 ELVVFITPRLV 383
PRK15346 PRK15346
EscC/YscC/HrcC family type III secretion system outer membrane ring protein;
150-457 2.94e-08

EscC/YscC/HrcC family type III secretion system outer membrane ring protein;


Pssm-ID: 237950 [Multi-domain]  Cd Length: 499  Bit Score: 56.24  E-value: 2.94e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286 150 SDIKVEIVSDNIVLTGSVRTPQDSARAVQLAeafLKGGEATTRNisltgGNNGGDAAIFAENRQVSQIV-----NMLT-- 222
Cdd:PRK15346 189 TDTTYQYRDQNVVVPGVVSVLREMAQGNSLP---LPGSNAVEGS-----PASQALPVFSADPRQNAVIVrdraaNMAIyr 260

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286 223 --IEGEDQ----VTLKVTVAEVSRQVLKQLGFNGSISSSTSNNGFEFSNPSNLGNAIDSATRIasgaigSGSLRFASYLN 296
Cdd:PRK15346 261 slITQLDQrpqmIEISVSIIDVDAGDINQLGIDWSASASLGGGKISFNSGFADGNASGFSTVI------SNTGNFMVRLN 334

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286 297 AMEQAGVMRTLAEPSLTAISGEQA------KFYVggdfRIAAEQDVSLdkdtgiatvkretETVDYGITLNFRPVVLSPG 370
Cdd:PRK15346 335 ALEKNSKAKILSQPSVVTLNNIQAvldknvTFYT----KLQGEKVAKL-------------ESITTGSLLRVTPRLIDDN 397

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286 371 -----RISLKIE-------TNVSEPTYEgnvvtgnygrnipgstymsVRKRETSTTVELPSGGSIVIAGLVQDNIRQAMS 438
Cdd:PRK15346 398 gtqkvMLNLNIQdgqqsatQSETDPLPE-------------------VQNSEIATQATLKAGQSLLLGGFIQDKQIESQN 458

                        330
                 ....*....|....*....
gi 490574286 439 GLPGMSKIPIFGTLFRSKD 457
Cdd:PRK15346 459 KIPLLGDIPLIGGLFRSTD 477
PRK15339 PRK15339
EscC/YscC/HrcC family type III secretion system outer membrane ring protein;
290-454 1.68e-05

EscC/YscC/HrcC family type III secretion system outer membrane ring protein;


Pssm-ID: 237948 [Multi-domain]  Cd Length: 559  Bit Score: 47.46  E-value: 1.68e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286 290 RFASYLNAMEQ---AGVMR---TLAEPSLTAISGEQAKFYVggdfRIAAEQDVSLdkdtgiatvkretETVDYGITLNFR 363
Cdd:PRK15339 350 RFIAAVMALEQkkkANVVSrpvVLTQENIPAIFDNNRTFYT----KLVGERNVAL-------------EHVTYGTMISVL 412

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490574286 364 PVVLSPGRI--SLKIEtnvseptyEGNVVTGNYGRNIPGSTYMSVRKRETSTTVELPSGGSIVIAGLVQDNIRQAMSGLP 441
Cdd:PRK15339 413 PRFSADGQIemSLDIE--------DGNEKTPQSDTTTSVDALPEVGRTLISTIARVPQGKSLLIGGYTRDANTDEVQSIP 484

                        170
                 ....*....|...
gi 490574286 442 GMSKIPIFGTLFR 454
Cdd:PRK15339 485 FLGSLPLIGSLFR 497
BON pfam04972
BON domain; This domain is found in a family of osmotic shock protection proteins. It is also ...
 139-198 2.28e-04

BON domain; This domain is found in a family of osmotic shock protection proteins. It is also found in some Secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes.


Pssm-ID: 428229 [Multi-domain]  Cd Length: 69  Bit Score: 39.51  E-value: 2.28e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 490574286  139 LEANIRRFIPES------DIKVEIVSDNIVLTGSVRTPQDSARAVQLAEAfLKGGEATTRNISLTG 198
Cdd:pfam04972   5 IAAKVKAALAKDpgldaaDINVTVENGVVTLSGTVPSEAEKEKAEEIARN-VAGVKKVVNQLTVAP 69
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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