|
Name |
Accession |
Description |
Interval |
E-value |
| GguB |
NF040906 |
sugar ABC transporter permease; |
23-397 |
0e+00 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 589.04 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 23 NIREYGMLIALVAIMVFFQFYTGGILFRPVNLTNLILQNSFIVIMALGMLLVIVAGHIDLSVGSIVAFVGAIAAILTVQW 102
Cdd:NF040906 1 NLRQYGMLIALVAIVVLFQILTGGILLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNW 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 103 GMNPFLAALICLVIGGIIGAAQGYWIAYHRIPSFIVTLAGMLVFRGLTLFVLGGKNIGPFPTDFQIISTGFLPDIGGIEG 182
Cdd:NF040906 81 GMPWWLAVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVVLGGQSIGPFPDGFQKISSGFLPDLFGGTG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 183 LNTTSMILTVLITVVLFYLAWRRRVVNVKHGIDVEPFGFFIAQNLLISAAILFLGYQLSTYRGLPNVLIVMLALVALYSF 262
Cdd:NF040906 161 LHLLTLLLGVLAAAALVWSQLRGRRRRIKYGLEVEPMALFIAKLVLIAAAILFFTYLLASYRGLPNVLIILGVLILVYSF 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 263 VTRRTTIGRRIYAMGGNEKATKLSGINTERLSFLTFVNMGVLAGLAGMIIATRLNSATPKAGVGFELDVIAACFIGGASA 342
Cdd:NF040906 241 VTNRTVIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASA 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 490578125 343 SGGVGKITGAVIGAFIMGVMNNGMSIVGLGIDFQQMVKGLVLLAAVFFDVYNKNK 397
Cdd:NF040906 321 SGGVGTVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAVAFDVYNKRK 375
|
|
| XylH |
COG4214 |
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]; |
4-398 |
4.22e-175 |
|
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443360 [Multi-domain] Cd Length: 393 Bit Score: 493.48 E-value: 4.22e-175
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 4 ANTTNEESNVVSVTSYIRSNIREYGMLIALVAIMVFFQFYTGGILFRPVNLTNLILQNSFIVIMALGMLLVIVAGHIDLS 83
Cdd:COG4214 2 STTAAPGGAVRSLRRLLGGDLRSLGMIIALVVIWIVFQILTGGTFLTPRNLSNLLLQNSYIGILAIGMVLVILLGHIDLS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 84 VGSIVAFVGAIAAILTVQWGMNPFLAALICLVIGGIIGAAQGYWIAYHRIPSFIVTLAGMLVFRGLTLFVLGGKNIGPFP 163
Cdd:COG4214 82 VGSVSGFVGAVAAVLMVNWGLPWWLAILAALLVGALIGAWQGFWVAYVGIPSFIVTLAGMLAFRGLTLLVLGGGTIAPFD 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 164 TDFQIISTGFLPDIGGieglnTTSMILTVLITVVLFYLAWRRRVVNVKHGIDVEPFGFFIAQNLLISAAILFLGYQLSTY 243
Cdd:COG4214 162 PTFQAIGNGFLPDILG-----TLSWVLGAVAVAAYVALQLRSRRRRRRYGLPVEPLWLFVLKLALLAVLILGAVYLLNSY 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 244 RGLPNVLIVMLALVALYSFVTRRTTIGRRIYAMGGNEKATKLSGINTERLSFLTFVNMGVLAGLAGMIIATRLNSATPKA 323
Cdd:COG4214 237 RGIPIVVLILLVLVVVYTFVLTRTVFGRHIYAVGGNPEAARLSGINVRRVTFSVFVNMGVLAALAGIVFAARLNSATPSA 316
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 490578125 324 GVGFELDVIAACFIGGASASGGVGKITGAVIGAFIMGVMNNGMSIVGLGIDFQQMVKGLVLLAAVFFDVYNKNKG 398
Cdd:COG4214 317 GTGFELDAIAAAVIGGTSLFGGVGTVYGAVIGALVMGSLNNGMSLLGVDSDWQQIVKGLVLLLAVAFDVLSRRRR 391
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
61-391 |
3.79e-63 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 203.41 E-value: 3.79e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 61 NSFIVIMALGMLLVIVAGHIDLSVGSIVAFVGAIAAILTVQWGMNPFLAALICLVIGGIIGAAQGYWIAYHRIPSFIVTL 140
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 141 AGMLVFRGLTLFVLGGKNIGPFPtdfqiistgflpdiggieglnttsmiltvlitvvlfylawrrrvvnvkhgidvEPFG 220
Cdd:cd06579 81 GTMFILRGLALLITGGRPISGLP-----------------------------------------------------PLFS 107
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 221 FFIAQNLLIsaailflgyqlstyrGLPNVLIVMLALVALYSFVTRRTTIGRRIYAMGGNEKATKLSGINTERLSFLTFVN 300
Cdd:cd06579 108 FFLGGGLIL---------------GIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARLSGINVRRVKILAYVL 172
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 301 MGVLAGLAGMIIATRLNSATPKAGVGFELDVIAACFIGGASASGGVGKITGAVIGAFIMGVMNNGMSIVGLGIDFQQMVK 380
Cdd:cd06579 173 SGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNGLNLLGVSSFWQQIVK 252
|
330
....*....|.
gi 490578125 381 GLVLLAAVFFD 391
Cdd:cd06579 253 GAILLLAVALD 263
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
30-395 |
2.42e-48 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 166.82 E-value: 2.42e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 30 LIALVAIMVFFQFYTGGiLFRPVNLTNLILQNSFIVIMALGMLLVIVAGHIDLSVGSIVAFVGAIAAILtVQWGMNPFLA 109
Cdd:PRK09512 22 LIALLVLIAIVSTLSPN-FFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASI-VGIEVNALVA 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 110 ALICLVIGGIIGAAQGYWIAYHRIPSFIVTLAGMLVFRGLTLFVlggknigpfpTDFQIISTGFlpdiggieglnttsmi 189
Cdd:PRK09512 100 VPAALALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVY----------TDGSPINTGF---------------- 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 190 ltvliTVVLFYLAWrrrvvnvkhgidvepFGffiaqnllisaailfLGYQLstyrGLPNVLIVMLALVALYSFVTRRTTI 269
Cdd:PRK09512 154 -----TDNADLFGW---------------FG---------------IGRPL----GIPTPVWIMAIVFLAAWYMLHHTRL 194
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 270 GRRIYAMGGNEKATKLSGINTERLSFLTFVNMGVLAGLAGMIIATRLNSATPKAGVGFELDVIAACFIGGASASGGVGKI 349
Cdd:PRK09512 195 GRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAALAGIIEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRI 274
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 490578125 350 TGAVIGAFIMGVMNNGMSIVGLGIDFQQMVKGLVLLAAVFFDVYNK 395
Cdd:PRK09512 275 VGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDNKKQ 320
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
53-388 |
3.83e-19 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 86.54 E-value: 3.83e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 53 NLTNLILQNSFIVIMALGMLLVI-VAGHIDLSVGSIVAFVGAIAAILTVQWGMNPFLAALICLVIGGIIGAAQGYWIAYH 131
Cdd:pfam02653 1 NILNILTLASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAYVAAMLLNLLGPGLWLALPVGILVGAAVGLLIGILTLRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 132 RIPSFIVTLAGMLVFRGLTLFVLGGKNIGPFptdfqiistgflpdiggieglnttsmiltvlitvvlfylawrrrvvnvk 211
Cdd:pfam02653 81 KINEVIITLLLNLAALGLALFLVTGILGGEG------------------------------------------------- 111
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 212 hGIDVEPFGFFIAQNLLISAAILFLgyqlstyrglpnvlIVMLALVALYSFVTRRTTIGRRIYAMGGNEKATKLSGINTE 291
Cdd:pfam02653 112 -GTSGITGPSGFPGAFLSFAFAFIF--------------LLALLLVLALWLLLYRTKFGRALRAVGENEEAARAAGINVK 176
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 292 RLSFLTFVNMGVLAGLAGMIIATRLNSATPK-AGVGFELDVIAACFIGGASAsggvgkITGAVIGAFIMGVMNNGMS-IV 369
Cdd:pfam02653 177 KLKLLTFVISGALAGLAGALLALYTGVVPPSnFGVGLGLDAIAAVVLGGAGS------PIGVVIGSLIIGLVQSLGLgAL 250
|
330
....*....|....*....
gi 490578125 370 GLGIDFQQMVKGLVLLAAV 388
Cdd:pfam02653 251 GSPPELSLLVLGALLILVL 269
|
|
| urea_trans_UrtB |
TIGR03409 |
urea ABC transporter, permease protein UrtB; Members of this protein family are ABC ... |
249-366 |
2.44e-03 |
|
urea ABC transporter, permease protein UrtB; Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 200272 [Multi-domain] Cd Length: 291 Bit Score: 39.53 E-value: 2.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 249 VLIVMLALVALYSFVTRRTTIGRRIYAMGGNEKATKLSGINTERLSFLTFVNMGVLAGLAGMIIATrLNSATPKAGVGFE 328
Cdd:TIGR03409 147 IIVLALAVLLALALLLYRTRLGLRVRAVTQNRSMAAALGINTRRVDALTFALGSGIAGVAGVALTL-IGNVGPTLGQLYI 225
|
90 100 110
....*....|....*....|....*....|....*...
gi 490578125 329 LDVIaacfigGASASGGVGKITGAVIGAFIMGVMNNGM 366
Cdd:TIGR03409 226 VDSF------LVVVFGGVGSLWGTVVAAFGLGVLNKIL 257
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| GguB |
NF040906 |
sugar ABC transporter permease; |
23-397 |
0e+00 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 589.04 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 23 NIREYGMLIALVAIMVFFQFYTGGILFRPVNLTNLILQNSFIVIMALGMLLVIVAGHIDLSVGSIVAFVGAIAAILTVQW 102
Cdd:NF040906 1 NLRQYGMLIALVAIVVLFQILTGGILLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNW 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 103 GMNPFLAALICLVIGGIIGAAQGYWIAYHRIPSFIVTLAGMLVFRGLTLFVLGGKNIGPFPTDFQIISTGFLPDIGGIEG 182
Cdd:NF040906 81 GMPWWLAVLLCLLVGALIGAWQGFWVAYVGIPAFIVTLAGMLVFRGLTLVVLGGQSIGPFPDGFQKISSGFLPDLFGGTG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 183 LNTTSMILTVLITVVLFYLAWRRRVVNVKHGIDVEPFGFFIAQNLLISAAILFLGYQLSTYRGLPNVLIVMLALVALYSF 262
Cdd:NF040906 161 LHLLTLLLGVLAAAALVWSQLRGRRRRIKYGLEVEPMALFIAKLVLIAAAILFFTYLLASYRGLPNVLIILGVLILVYSF 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 263 VTRRTTIGRRIYAMGGNEKATKLSGINTERLSFLTFVNMGVLAGLAGMIIATRLNSATPKAGVGFELDVIAACFIGGASA 342
Cdd:NF040906 241 VTNRTVIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASA 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 490578125 343 SGGVGKITGAVIGAFIMGVMNNGMSIVGLGIDFQQMVKGLVLLAAVFFDVYNKNK 397
Cdd:NF040906 321 SGGVGTVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAVAFDVYNKRK 375
|
|
| XylH |
COG4214 |
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]; |
4-398 |
4.22e-175 |
|
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443360 [Multi-domain] Cd Length: 393 Bit Score: 493.48 E-value: 4.22e-175
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 4 ANTTNEESNVVSVTSYIRSNIREYGMLIALVAIMVFFQFYTGGILFRPVNLTNLILQNSFIVIMALGMLLVIVAGHIDLS 83
Cdd:COG4214 2 STTAAPGGAVRSLRRLLGGDLRSLGMIIALVVIWIVFQILTGGTFLTPRNLSNLLLQNSYIGILAIGMVLVILLGHIDLS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 84 VGSIVAFVGAIAAILTVQWGMNPFLAALICLVIGGIIGAAQGYWIAYHRIPSFIVTLAGMLVFRGLTLFVLGGKNIGPFP 163
Cdd:COG4214 82 VGSVSGFVGAVAAVLMVNWGLPWWLAILAALLVGALIGAWQGFWVAYVGIPSFIVTLAGMLAFRGLTLLVLGGGTIAPFD 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 164 TDFQIISTGFLPDIGGieglnTTSMILTVLITVVLFYLAWRRRVVNVKHGIDVEPFGFFIAQNLLISAAILFLGYQLSTY 243
Cdd:COG4214 162 PTFQAIGNGFLPDILG-----TLSWVLGAVAVAAYVALQLRSRRRRRRYGLPVEPLWLFVLKLALLAVLILGAVYLLNSY 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 244 RGLPNVLIVMLALVALYSFVTRRTTIGRRIYAMGGNEKATKLSGINTERLSFLTFVNMGVLAGLAGMIIATRLNSATPKA 323
Cdd:COG4214 237 RGIPIVVLILLVLVVVYTFVLTRTVFGRHIYAVGGNPEAARLSGINVRRVTFSVFVNMGVLAALAGIVFAARLNSATPSA 316
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 490578125 324 GVGFELDVIAACFIGGASASGGVGKITGAVIGAFIMGVMNNGMSIVGLGIDFQQMVKGLVLLAAVFFDVYNKNKG 398
Cdd:COG4214 317 GTGFELDAIAAAVIGGTSLFGGVGTVYGAVIGALVMGSLNNGMSLLGVDSDWQQIVKGLVLLLAVAFDVLSRRRR 391
|
|
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
11-397 |
3.66e-77 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 241.55 E-value: 3.66e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 11 SNVVSVTSYIRSNIREYGMLIALVAIMVFFQFYTGGIlFRPVNLTNLILQNSFIVIMALGMLLVIVAGHIDLSVGSIVAF 90
Cdd:COG1172 3 ATTTTARSLLRRLLPELGLLLALVLLLVVFSILSPGF-LSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 91 VGAIAAILTVQWGMNPFLAALICLVIGGIIGAAQGYWIAYHRIPSFIVTLAGMLVFRGLTLFVLGGKNIGPFPTDFQIIS 170
Cdd:COG1172 82 SGVVAALLLVALGLPILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPISGLPDAFRALG 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 171 TGFLPdiggieglnttsmiltvlitvvlfylawrrrvvnvkhgidvepfgffiaqnllisaailflgyqlstyrGLPNVL 250
Cdd:COG1172 162 QGSLL---------------------------------------------------------------------GIPVPV 172
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 251 IVMLALVALYSFVTRRTTIGRRIYAMGGNEKATKLSGINTERLSFLTFVNMGVLAGLAGMIIATRLNSATPKAGVGFELD 330
Cdd:COG1172 173 LIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPNAGSGYELD 252
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 490578125 331 VIAACFIGGASASGGVGKITGAVIGAFIMGVMNNGMSIVGLGIDFQQMVKGLVLLAAVFFDVYNKNK 397
Cdd:COG1172 253 AIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDRLRRRR 319
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
61-391 |
3.79e-63 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 203.41 E-value: 3.79e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 61 NSFIVIMALGMLLVIVAGHIDLSVGSIVAFVGAIAAILTVQWGMNPFLAALICLVIGGIIGAAQGYWIAYHRIPSFIVTL 140
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 141 AGMLVFRGLTLFVLGGKNIGPFPtdfqiistgflpdiggieglnttsmiltvlitvvlfylawrrrvvnvkhgidvEPFG 220
Cdd:cd06579 81 GTMFILRGLALLITGGRPISGLP-----------------------------------------------------PLFS 107
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 221 FFIAQNLLIsaailflgyqlstyrGLPNVLIVMLALVALYSFVTRRTTIGRRIYAMGGNEKATKLSGINTERLSFLTFVN 300
Cdd:cd06579 108 FFLGGGLIL---------------GIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARLSGINVRRVKILAYVL 172
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 301 MGVLAGLAGMIIATRLNSATPKAGVGFELDVIAACFIGGASASGGVGKITGAVIGAFIMGVMNNGMSIVGLGIDFQQMVK 380
Cdd:cd06579 173 SGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNGLNLLGVSSFWQQIVK 252
|
330
....*....|.
gi 490578125 381 GLVLLAAVFFD 391
Cdd:cd06579 253 GAILLLAVALD 263
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
30-395 |
2.42e-48 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 166.82 E-value: 2.42e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 30 LIALVAIMVFFQFYTGGiLFRPVNLTNLILQNSFIVIMALGMLLVIVAGHIDLSVGSIVAFVGAIAAILtVQWGMNPFLA 109
Cdd:PRK09512 22 LIALLVLIAIVSTLSPN-FFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASI-VGIEVNALVA 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 110 ALICLVIGGIIGAAQGYWIAYHRIPSFIVTLAGMLVFRGLTLFVlggknigpfpTDFQIISTGFlpdiggieglnttsmi 189
Cdd:PRK09512 100 VPAALALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVY----------TDGSPINTGF---------------- 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 190 ltvliTVVLFYLAWrrrvvnvkhgidvepFGffiaqnllisaailfLGYQLstyrGLPNVLIVMLALVALYSFVTRRTTI 269
Cdd:PRK09512 154 -----TDNADLFGW---------------FG---------------IGRPL----GIPTPVWIMAIVFLAAWYMLHHTRL 194
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 270 GRRIYAMGGNEKATKLSGINTERLSFLTFVNMGVLAGLAGMIIATRLNSATPKAGVGFELDVIAACFIGGASASGGVGKI 349
Cdd:PRK09512 195 GRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAALAGIIEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRI 274
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 490578125 350 TGAVIGAFIMGVMNNGMSIVGLGIDFQQMVKGLVLLAAVFFDVYNK 395
Cdd:PRK09512 275 VGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDNKKQ 320
|
|
| araH |
PRK11285 |
L-arabinose transporter permease protein; Provisional |
26-398 |
1.89e-42 |
|
L-arabinose transporter permease protein; Provisional
Pssm-ID: 183076 [Multi-domain] Cd Length: 333 Bit Score: 151.37 E-value: 1.89e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 26 EYGMLIALVAIMVFFQFYTGGiLFRPVNLTNLILQNSFIVIMALGMLLVIVAGHIDLSVGSIVAFVGAIAAILTVQWGmN 105
Cdd:PRK11285 29 QYGMLVVFAVLFIACSLFVPN-FASFINMKGLGLAISMIGMVACTMLFCLASGDFDLSVASVVAFAGVVTAVVINATE-S 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 106 PFLAALICLVIGGIIGAAQGYWIAYHRIPSFIVTLAGMLVFRGLTLFVLGGKNIGpfptdfqiistgflpdiggieglnt 185
Cdd:PRK11285 107 LWLGVAAGLLLGAAVGLVNGFVIARLKINALITTLATMQIVRGLAYIISDGKAVG------------------------- 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 186 tsmiltvlitvvlfylawrrrvvnvkhgidVEPFGFFIaqnllisaailfLGYqlSTYRGLPNVLIVMLALVALYSFVTR 265
Cdd:PRK11285 162 ------------------------------ISDERFFA------------LGY--ANFFGVPAPIWLTVACFVVFGFLLN 197
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 266 RTTIGRRIYAMGGNEKATKLSGINTERLSFLTFVNMGVLAGLAGMIIATRLNSATPKAGVGFELDVIAACFIGGASASGG 345
Cdd:PRK11285 198 KTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLQGLVSALAGVILASRMTSGQPMTSIGFELIVISACVLGGVSLKGG 277
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 490578125 346 VGKITGAVIGAFIMGVMNNGMSIVGLGIDFQQMVKGLVLLAAVFFDVYNKNKG 398
Cdd:PRK11285 278 IAKISGVVAGVLILGTVENAMNLLNISPFYQYVVRGLILLAAVLFDRYKQRAK 330
|
|
| COG4158 |
COG4158 |
Predicted ABC-type sugar transport system, permease component [General function prediction ... |
20-393 |
5.50e-42 |
|
Predicted ABC-type sugar transport system, permease component [General function prediction only];
Pssm-ID: 443324 Cd Length: 334 Bit Score: 150.46 E-value: 5.50e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 20 IRSNIREYGMLIALVAIMVFFQFYTGGIlFRPVNLTNLILQNSFIVIMALGMLLVIVAGHIDLSVGSIVAfVGAIAAILT 99
Cdd:COG4158 23 LRSLLQAVGMLPVLILLCIGFELLTPNF-LTVQNLSNIARQASINIVLAAGMTFVILTGGIDLSVGSILA-ASAVVAVLV 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 100 VQWGMNPFLAALICLVIGGIIGAAQGYWIAYHRIPSFIVTLAGMLVFRGLTLFVLGGknigpfptdfqiiSTGFLPDIgg 179
Cdd:COG4158 101 SLLPGLGLLGIPAALLVGLLFGLINGLLIAFLKLPPFIVTLGSLTALRGAARLLANG-------------TTVFNPDL-- 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 180 ieglnttsmiltvlitvvlfylawrrrvvnvkhgidvePFGFfiaqnllISAAILFlgyqlstyrGLPNVLIVMLALVAL 259
Cdd:COG4158 166 --------------------------------------PFAW-------IGNGYLL---------GIPWLVVIALAVVLA 191
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 260 YSFVTRRTTIGRRIYAMGGNEKATKLSGINTERLSFLTFVNMGVLAGLAGMIIATRLNSATP-KAGVGFELDVIAACFIG 338
Cdd:COG4158 192 SWFILRRTVLGVHIYAVGGNAQAARLTGIKVWRVLLFVYAVSGLLAGLGGVMSAARLYAANGlQLGQGYELDAIAAVILG 271
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 490578125 339 GASASGGVGKITGAVIGAFIMGVMNNGMSIVGLGIDFQQMVKGLVLLAAVFFDVY 393
Cdd:COG4158 272 GTSFVGGIGSIWGTLIGALIIAVLNNGLILLGVSDFWQFIIKGLVIIIAVALDRY 326
|
|
| PRK09699 |
PRK09699 |
D-allose ABC transporter permease; |
26-391 |
5.69e-38 |
|
D-allose ABC transporter permease;
Pssm-ID: 182035 [Multi-domain] Cd Length: 312 Bit Score: 139.14 E-value: 5.69e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 26 EYGMLIALVAIMVFFQFYTGGILFRPVNLTNLILQNSFIVIMALGMLLVIVAGHIDLSVGSIVAFVGAIAAILTVQwGMN 105
Cdd:PRK09699 11 KYGTFFILAIIVAIFGSLSPEYFLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKLMLA-GVD 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 106 PFLAALI-CLVIGGIIGAAQGYWIAYHRIPSFIVTLAGMLVFRGLTLFVLGGKNIGPFPTDFqiistgflpdiggiegln 184
Cdd:PRK09699 90 PFLAALIgGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFSFDF------------------ 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 185 ttsmiltvlitvvlfylawrrrvVNvkhgidvepfgfFIAQNLLisaailflgyqlstyrGLPNVLIVMLALVALYSFVT 264
Cdd:PRK09699 152 -----------------------VN------------FFAASVI----------------GIPVPVIFSLIVALILWFLT 180
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 265 RRTTIGRRIYAMGGNEKATKLSGINTERLSFLTFVNMGVLAGLAGMIIATRLNSATPKAGVGFELDVIAACFIGGASASG 344
Cdd:PRK09699 181 TRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAGMGFETYAIASAIIGGTSFFG 260
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 490578125 345 GVGKITGAVIGAFIMGVMNNGMSIVGLGIDFQQMVKGLVLLAAVFFD 391
Cdd:PRK09699 261 GKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAVALD 307
|
|
| PRK11618 |
PRK11618 |
inner membrane ABC transporter permease protein YjfF; Provisional |
33-361 |
4.34e-30 |
|
inner membrane ABC transporter permease protein YjfF; Provisional
Pssm-ID: 183235 [Multi-domain] Cd Length: 317 Bit Score: 117.75 E-value: 4.34e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 33 LVAIMVFFQFYTGGILFRP-----VNLTNLILQNSFIVIMALGMLLVIVAGHIDLSVGSIVAFVGAIAAILTVQWGMNPF 107
Cdd:PRK11618 9 MITIGVFVLGYLFCLVQFPgfastRVICNLLTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKLIGDYGWSPL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 108 LAALICLVIGGIIGAAQGYWIAYHRIPSFIVTLAGMLVFRGLTLfvlggknigpfptdfqIISTGFLPdiggieglntts 187
Cdd:PRK11618 89 LAFPLVLVMGAAFGAFMGALIHYLKLPAFIVTLAGMFLARGVSF----------------LVSEESIP------------ 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 188 miltvlitvvlfylawrrrvvnVKHGI--DVEPFGFFIAQNLLISAAILflgyqlstyrglpnvliVMLALVALYSFVTR 265
Cdd:PRK11618 141 ----------------------INHPFydTLSSLAWKLPGGGRLSAMAL-----------------IMLAVVAIGIFLAH 181
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 266 RTTIGRRIYAMGGNEKATKLSGINTERLSFLTFVNMGVLAGLAGMIIATRLNSATPKAGVGFELDVIAACFIGGASASGG 345
Cdd:PRK11618 182 RTRFGNNVYAIGGNATSANLMGIPVRRTTIRIYMLSGFLATLAGIVFSLYTSAGYALAAVGVELDAIAAVVIGGTLLTGG 261
|
330
....*....|....*.
gi 490578125 346 VGKITGAVIGAFIMGV 361
Cdd:PRK11618 262 VGTVLGTLFGVLIQGL 277
|
|
| mglC |
PRK09478 |
galactose/methyl galactoside ABC transporter permease MglC; |
27-391 |
1.94e-26 |
|
galactose/methyl galactoside ABC transporter permease MglC;
Pssm-ID: 181892 [Multi-domain] Cd Length: 336 Bit Score: 108.24 E-value: 1.94e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 27 YGMLIALVAIMVFFQfytgGILFRPVNLTNLILQNSFIVIMALGMLLVIVAGHIDLSVGSIVAFVGAIAAILtVQWGMNP 106
Cdd:PRK09478 19 YVVLLVLLAIIIIQD----PTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATL-LQSMDNA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 107 ------------FLAALICLVIGGIIGAAQGYWIAYHRIPSFIVTLAGMLVFRGLTLF---VLGGKNIGPFPTDFQIIST 171
Cdd:PRK09478 94 nkvfpelatmpiALVILIVCAIGAVIGLINGLIIAYLNVTPFIATLGTMIIVYGINSLyydFVGASPISGFDSGFSTFAQ 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 172 GFLPdiggieglnttsmiltvlitvvlfylawrrrvvnvkhgidvepFGFFIAQNLLISAAILflgyqlstyrglpnvli 251
Cdd:PRK09478 174 GFVA-------------------------------------------LGSFRLSYITFYALIA----------------- 193
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 252 vmlalVALYSFVTRRTTIGRRIYAMGGNEKATKLSGINTERLSFLTFVNMGVLAGLAGMIIATRLNSATPKAGVGFELDV 331
Cdd:PRK09478 194 -----VAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVPLNLLMIYALSGVFYAFGGMLEAGRIGSATNNLGFMYELDA 268
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 332 IAACFIGGASASGGVGKITGAVIGAFIMGVMNNGMSIVGLGIDFQQMVKGLVLLAAVFFD 391
Cdd:PRK09478 269 IAACVVGGVSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAIIIFAVALD 328
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
53-388 |
3.83e-19 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 86.54 E-value: 3.83e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 53 NLTNLILQNSFIVIMALGMLLVI-VAGHIDLSVGSIVAFVGAIAAILTVQWGMNPFLAALICLVIGGIIGAAQGYWIAYH 131
Cdd:pfam02653 1 NILNILTLASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAYVAAMLLNLLGPGLWLALPVGILVGAAVGLLIGILTLRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 132 RIPSFIVTLAGMLVFRGLTLFVLGGKNIGPFptdfqiistgflpdiggieglnttsmiltvlitvvlfylawrrrvvnvk 211
Cdd:pfam02653 81 KINEVIITLLLNLAALGLALFLVTGILGGEG------------------------------------------------- 111
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 212 hGIDVEPFGFFIAQNLLISAAILFLgyqlstyrglpnvlIVMLALVALYSFVTRRTTIGRRIYAMGGNEKATKLSGINTE 291
Cdd:pfam02653 112 -GTSGITGPSGFPGAFLSFAFAFIF--------------LLALLLVLALWLLLYRTKFGRALRAVGENEEAARAAGINVK 176
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 292 RLSFLTFVNMGVLAGLAGMIIATRLNSATPK-AGVGFELDVIAACFIGGASAsggvgkITGAVIGAFIMGVMNNGMS-IV 369
Cdd:pfam02653 177 KLKLLTFVISGALAGLAGALLALYTGVVPPSnFGVGLGLDAIAAVVLGGAGS------PIGVVIGSLIIGLVQSLGLgAL 250
|
330
....*....|....*....
gi 490578125 370 GLGIDFQQMVKGLVLLAAV 388
Cdd:pfam02653 251 GSPPELSLLVLGALLILVL 269
|
|
| PRK15432 |
PRK15432 |
autoinducer 2 ABC transporter permease LsrC; Provisional |
23-391 |
1.30e-18 |
|
autoinducer 2 ABC transporter permease LsrC; Provisional
Pssm-ID: 185330 [Multi-domain] Cd Length: 344 Bit Score: 86.32 E-value: 1.30e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 23 NIREYGMLIALVAIMVFFQFYTGGilFRPVNLTNLILQNSFIVIM-ALGMLLVIVAGHIDLSVGSIVAFVgAIAAILTVQ 101
Cdd:PRK15432 7 NNRELTALLAIVLLFVLLGFLDRQ--YLSLQTLTMVFSSAQILILlAIGATLVMLTRNIDVSVGSITGLC-AVLVGMLLN 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 102 WGMNPFLAALICLVIGGIIGAAQGYWIAYHRIPSFIVTLAGMLVFRGLTLFVLGGKNIGPFPTDFQIISTGFLpdiggie 181
Cdd:PRK15432 84 AGYSLPVACLATLLLGLLAGFFNGVLVAWLRIPAIVATLGTLGLYRGIMLLWTGGKWIEGLPAELKQLSAPIL------- 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 182 glnttsmiltvlitvvlfylawrrrvvnvkhgIDVEPFGffiaqnllisaailflgyqlstyrglpnvLIVMLALVALYS 261
Cdd:PRK15432 157 --------------------------------LGISPIG-----------------------------WLTLILILAMAW 175
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 262 FVTRrTTIGRRIYAMGGNEKATKLSGINTERLSFLTFVNMGVLAGLAGMIIATRLNSATPKAGVGFELDVIAACFIGGAS 341
Cdd:PRK15432 176 LLAK-TAFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQIGFIPNQTGTGLEMKAIAACVLGGIS 254
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 490578125 342 ASGGVGKITGAVIGAFIMGVMNNGMSIVGLGIDFQQMVKGLVLLAAVFFD 391
Cdd:PRK15432 255 LLGGSGTIIGAVLGAYFLTQIDSVLVLLRIPAWWNDFIAGLVLLGVLVFD 304
|
|
| TM_PBP1_branched-chain-AA_like |
cd06574 |
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette ... |
64-388 |
6.66e-14 |
|
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.
Pssm-ID: 119320 [Multi-domain] Cd Length: 266 Bit Score: 71.15 E-value: 6.66e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 64 IVIMALGMLLVI-VAGHIDLSVGSIVAFVGAIAAILTVQwGMNPFLAALICLVIGGIIGAAQGYWIAYHRIPSFIVTLAG 142
Cdd:cd06574 4 YAILALGVYIVFrILGFPDLTVDGSFPLGAAVAAILIVA-GYNPWLALIAAILAGAAAGLVTGFLHTRLKINGLLAGILI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 143 MLVFRGLTLFVLGGKNIGPFPTDfqiistgflpdiggieglnttsmiltvlitvvlfylawrrrvvnvkhgidvepfgff 222
Cdd:cd06574 83 MIGLYSINLRIMGGPNIPLGTRD--------------------------------------------------------- 105
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 223 iaqnlliSAAILFLGYQLSTYRGLPNVLIVMLALVALYSFVTRRTTIGRRIYAMGGNEKATKLSGINTERLSFLTFVNMG 302
Cdd:cd06574 106 -------TLLGLLLLFGISGTLSIPVVLLLIVLLVLFLVIWFLRTKLGLAMRATGDNPDMARSLGINVDRTRILGLVISN 178
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 303 VLAGLAGMIIATRLNSATPKAGVGFELDVIAACFI--GGASASGGVGKITGAVIGAFIMGVMNNGMSIVGLGIDFQQMVK 380
Cdd:cd06574 179 ALAALGGALYAQYQGFADVNMGIGTGVIGLAAVIIggAIVGRRTIKASILGVIIGAILYRIALALALGSGLIPSDLKLIT 258
|
....*...
gi 490578125 381 GLVLLAAV 388
Cdd:cd06574 259 AGVIVLVL 266
|
|
| LivH |
COG0559 |
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport ... |
62-388 |
3.47e-12 |
|
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440325 [Multi-domain] Cd Length: 290 Bit Score: 66.24 E-value: 3.47e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 62 SFIVIMALGMLLV-IVAGHIDLSVGSIVAFVGAIAAILTVQWGMNPFLAALICLVIGGIIGAAQgYWIAYHR------IP 134
Cdd:COG0559 16 SIYALIALGLTLIfGVMGVINFAHGEFVMLGAYVAYTLATLLGLPLWLALLLAVLVAALLGVLL-ERLVIRPlrgappLA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 135 SFIVTLAGMLVFRGLTLFVLGGKNIgPFPTdfqiistgflpdiggieglnttsmiltvlitvvlfylawrrrvvnvkhgi 214
Cdd:COG0559 95 LLLATIGLSLVLQGLVLLIFGADPR-SFPA-------------------------------------------------- 123
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 215 dvepfgffiaqnlLISAAILFLGYQLSTYRGLpnVLIVMLALVALYSFVTRRTTIGRRIYAMGGNEKATKLSGINTERLS 294
Cdd:COG0559 124 -------------LLSGSVELGGVSIPAYRLF--IIVVALVLLAALWLFLRRTRLGLAMRAVAQNREAARLMGINVDRVI 188
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 295 FLTFVNMGVLAGLAGMIIATRLnSATPKAGVGFELDVIAACFIGGASAsggvgkITGAVIGAFIMGVMNNGMSIVgLGID 374
Cdd:COG0559 189 ALTFALGAALAGLAGVLLAPIY-SVSPTMGFLLGLKAFAAVVLGGLGS------IPGAVVGGLLLGLAESLGAAY-LPSG 260
|
330
....*....|....
gi 490578125 375 FQQMVkGLVLLAAV 388
Cdd:COG0559 261 YKDVV-AFVLLILV 273
|
|
| TM_PBP1_LivH_like |
cd06582 |
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two ... |
62-388 |
1.58e-11 |
|
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119324 [Multi-domain] Cd Length: 272 Bit Score: 64.37 E-value: 1.58e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 62 SFIVIMALGMLLVI-VAGHIDLSVGSIVAFVGAIAAILTVQWGMNPFLAALICLVIGGIIGAAqGYWIAYHRI-----PS 135
Cdd:cd06582 6 AIYALIALGLTLIFgVTGVINFAHGEFYMLGAYVAYTLLVALGLPFWLALLLALLVAALLGVL-LERLVLRPLrgaplLT 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 136 FIVTLAGMLVFRGLTLFVLGGKNIGPFPTdfqiistgflpdiggieglnttsmiltvlitvvlfylawrrrvvnvkhgid 215
Cdd:cd06582 85 LLITFGGLLILLQGLLLIFGGDPRVPPPP--------------------------------------------------- 113
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 216 vepfgffiaqnlLISAAILFLGYQLSTYRGLpnVLIVMLALVALYSFVTRRTTIGRRIYAMGGNEKATKLSGINTERLSF 295
Cdd:cd06582 114 ------------LLSGSVELGGVTIPPYRLF--IIAVALVLLAALYLFLRRTRLGRAIRAVAQNPEAARLLGINVRRVFA 179
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 296 LTFVNMGVLAGLAGMIIATrLNSATPKAGVGFELDVIAACFIGGASAsggvgkITGAVIGAFIMGVMNNgMSIVGLGIDF 375
Cdd:cd06582 180 LTFALGAALAGLAGVLLAP-ITGVSPTMGLLLLLKAFAAVVLGGLGS------IPGAVVGGLLLGLAES-LAAAYLSSGY 251
|
330
....*....|...
gi 490578125 376 QQMVkGLVLLAAV 388
Cdd:cd06582 252 KDAV-AFVLLILV 263
|
|
| PRK15038 |
PRK15038 |
autoinducer 2 ABC transporter permease LsrD; |
25-388 |
9.90e-10 |
|
autoinducer 2 ABC transporter permease LsrD;
Pssm-ID: 184998 Cd Length: 330 Bit Score: 59.46 E-value: 9.90e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 25 REYGMLIALVAIMVFFQFYTGGILFRPVNLTNLILQNS---FIVIMALGMLLVIVAGHIDLSVGSIVAFVgAIAAILTVQ 101
Cdd:PRK15038 3 RRYGWELALAALLVIEILAFGLINPRMLDINVLLFSTSdfiCIGIVALPLTMVIVSGGIDISFGSTIGLC-AIALGVLFQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 102 WGMNPFLAALICLVIGGIIGAAQGYWIAYHRIPSFIVTLAGMLVFRGLTLFVLGgknigpfptdfqiistgfLPDIGGIE 181
Cdd:PRK15038 82 SGVPMPLAILLTLLLGALCGLINAGLIIYTGVNPLVITLGTLYLFGGSALLLSG------------------MAGATGYE 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 182 GLNTTSMILTVLITVVLFylawrrrvvnvkhgidvepfgffiaqnllisaailflgyqlstyrGLPNVLIVMLALVALYS 261
Cdd:PRK15038 144 GIGGFPMAFTDFANLDVL---------------------------------------------GLPVPLIIFLICLLVFW 178
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 262 FVTRRTTIGRRIYAMGGNEKATKLSGINTERLSFLTFVNMGVLAGLAGMIIATRLNSATPKAGVGFELDVIAACFIGGAS 341
Cdd:PRK15038 179 LLMHRTHAGRNVFLIGQSPRVALYSAIPVNRTLCALYAMTGLASAIAAVLLVSYFGSARSDLGASFLMPAITAVVLGGAN 258
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 490578125 342 ASGGVGKITGAVIGAFIMGVMNNGMSIVGLGIDFQQMVKGLVLLAAV 388
Cdd:PRK15038 259 IYGGSGSIIGTALAVLLVGYLQQGLQMAGVPNQISSALSGALLIVVV 305
|
|
| TM_PBP1_LivM_like |
cd06581 |
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two ... |
227-390 |
9.52e-08 |
|
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119323 [Multi-domain] Cd Length: 268 Bit Score: 52.83 E-value: 9.52e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 227 LLISAAILFLGYQLSTYRGLPNVLIVMLALVALYSFVTRRTTIGRRIYAMGGNEKATKLSGINTERLSFLTFVNMGVLAG 306
Cdd:cd06581 105 LSGIPPPLLGGLLLSSPLAFYYLVLAVLLLVLLLLRRLVRSPFGRALRAIRENEVAAEALGINVTRYKLLAFALSAALAG 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 307 LAGMIIATRLNSATPKA-GVGFELDVIAACFIGGASAsggvgkITGAVIGAFIMGVMNNGMSivGLGIDFQQMVKGLVLL 385
Cdd:cd06581 185 LAGALYAHYLGFVSPESfGFALSIELLLMVVLGGLGS------LLGPVLGAALLVLLPELLR--SLGPGLRLLVFGLLLI 256
|
....*
gi 490578125 386 AAVFF 390
Cdd:cd06581 257 LVVLF 261
|
|
| LivM |
COG4177 |
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport ... |
232-390 |
1.72e-07 |
|
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443336 [Multi-domain] Cd Length: 285 Bit Score: 52.39 E-value: 1.72e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 232 AILFLGYQLSTYRGLPNVLIVMLALVALYSFVTRRTTIGRRIYAMGGNEKATKLSGINTERLSFLTFVNMGVLAGLAGMI 311
Cdd:COG4177 120 RPTLFGLDLGSPLAFYYLVLALLVLVLLLLRRLVRSRFGRALRAIRENEIAAEALGINVTRYKLLAFVLSAALAGLAGAL 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 312 IATRLNSATPKA-GVGFELDVIAACFIGGASAsggvgkITGAVIGAFIMGVMNNGMSIVGlgiDFQQMVKGLVLLAAVFF 390
Cdd:COG4177 200 YAHYVGFVSPESfSFLLSIEILLMVVLGGLGS------LLGPVLGAVLLVLLPELLRSLP---EYRLLIFGLLLILVVLF 270
|
|
| NupP |
COG4603 |
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and ... |
250-392 |
2.92e-07 |
|
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and metabolism];
Pssm-ID: 443653 [Multi-domain] Cd Length: 356 Bit Score: 52.05 E-value: 2.92e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 250 LIVMLALVALYSFVTRRTTIGRRIYAMGGNEKATKLSGINTERLSFLTFVNMGVLAGLAGMI----IATRLNSATPkAGV 325
Cdd:COG4603 200 LLIALLAAVLVWVLLNRTTLGYELRAVGLNPRAARYAGINVKRLIVLAMLISGALAGLAGAVevlgVQGRLTPGFS-PGY 278
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490578125 326 GFelDVIAACFIggasasgGVGKITGAVIGAFIMGVMNNG---MSI-VGLGIDFQQMVKGLVLLAAVFFDV 392
Cdd:COG4603 279 GF--TGIAVALL-------GRNNPLGIILAALLFGALYVGgdaMQRaLGVPSEIVDVIQGLIILFVLAADF 340
|
|
| TM_PBP1_transp_TpRbsC_like |
cd06580 |
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. ... |
232-387 |
3.36e-06 |
|
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Pssm-ID: 119322 [Multi-domain] Cd Length: 234 Bit Score: 47.82 E-value: 3.36e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 232 AILFLGYQLSTYrglpnVLIVMLALVALYSFVTRRTTIGRRIYAMGGNEKATKLSGINTERLSFLTFVNMGVLAGLAGMI 311
Cdd:cd06580 85 MLNYIALGLTSY-----LLLLALLLVILVWLLLYRTRFGLRLRAVGENPRAARYAGINVKRVRLLAMLISGALAGLAGAY 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 312 -IATRLNSATPKAGVGFELDVIAACFIggasasgGVGKITGAVIGAFIMGVMNNGM----SIVGLGIDFQQMVKGLVLLA 386
Cdd:cd06580 160 lVLGVQGRFTEGMSAGYGFIAIAVALL-------GRWNPLGILLAALLFGALEAGGialqRSGGVPSELVQVLPGIIVLF 232
|
.
gi 490578125 387 A 387
Cdd:cd06580 233 V 233
|
|
| urea_trans_UrtB |
TIGR03409 |
urea ABC transporter, permease protein UrtB; Members of this protein family are ABC ... |
249-366 |
2.44e-03 |
|
urea ABC transporter, permease protein UrtB; Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 200272 [Multi-domain] Cd Length: 291 Bit Score: 39.53 E-value: 2.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 249 VLIVMLALVALYSFVTRRTTIGRRIYAMGGNEKATKLSGINTERLSFLTFVNMGVLAGLAGMIIATrLNSATPKAGVGFE 328
Cdd:TIGR03409 147 IIVLALAVLLALALLLYRTRLGLRVRAVTQNRSMAAALGINTRRVDALTFALGSGIAGVAGVALTL-IGNVGPTLGQLYI 225
|
90 100 110
....*....|....*....|....*....|....*...
gi 490578125 329 LDVIaacfigGASASGGVGKITGAVIGAFIMGVMNNGM 366
Cdd:TIGR03409 226 VDSF------LVVVFGGVGSLWGTVVAAFGLGVLNKIL 257
|
|
| PRK10740 |
PRK10740 |
high-affinity branched-chain amino acid ABC transporter permease LivH; |
250-361 |
7.11e-03 |
|
high-affinity branched-chain amino acid ABC transporter permease LivH;
Pssm-ID: 182689 [Multi-domain] Cd Length: 308 Bit Score: 37.98 E-value: 7.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490578125 250 LIVMLALVALYSFVtRRTTIGRRIYAMGGNEKATKLSGINTERLSFLTFVNMGVLAGLAGMIIATRLNSATPKAGVGFEL 329
Cdd:PRK10740 162 IVTFLAMLALTIFI-RYSRMGRACRACAEDLKMASLLGINTDRVIALTFVIGAAMAAVAGVLLGQFYGVINPYIGFMAGM 240
|
90 100 110
....*....|....*....|....*....|..
gi 490578125 330 DVIAACFIggasasGGVGKITGAVIGAFIMGV 361
Cdd:PRK10740 241 KAFTAAVL------GGIGSIPGAMIGGLILGI 266
|
|
| |
