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Conserved domains on  [gi|490580235|ref|WP_004445255|]
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MULTISPECIES: carbohydrate ABC transporter permease [Rhizobium/Agrobacterium group]

Protein Classification

carbohydrate ABC transporter permease( domain architecture ID 11417684)

carbohydrate ABC transporter permease, part of a periplasmic binding protein (PBP)-dependent ABC transporter may be involved in transport of one or more of a variety of mono-, di-, or polysaccharides, such as trehalose/maltose (MalG) and alginate (AlgM); responsible for translocation of the substrate across the membrane

Gene Ontology:  GO:0055085|GO:0008643
PubMed:  19234479|27273632
TCDB:  3.A.1.1.

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 2-274 1.04e-69

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


:

Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 216.50  E-value: 1.04e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490580235   2 ARKTTTRAKIGFSIAAWIVALLLFFPILYAFLTSIKTEPEAIA-GFSLIPSG-TLENYVTVQTQRDYFKPFMNSVVLSLG 79
Cdd:COG0395    6 RRRRRRLGRILLYLLLILLALLFLFPLYWMVVTSFKPPAEIFSgPPSLLPSEfTLENYRAAFTDGPFGRYLLNSLIVAVV 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490580235  80 STIIALIIAIPAAWAMAFSPTKRTKDILMWMLSTKMMPAVAVLVPIYLIFRNAGLLDTRIGLTIMLTFINLPIVIWMLYT 159
Cdd:COG0395   86 STVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAFGLPFGIFLLRQ 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490580235 160 YFREIPGEILEAARMDGASLWNEIVHVLTPMAVPGIASTLLLNVILAWNESFWT-IRLTTTNAAPLTAFIASFSSPQGLF 238
Cdd:COG0395  166 FFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPlILLTSPDLRTLPVGLASFQGQYGTD 245

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 490580235 239 WAKLSAASMMAIAPILVIGWFSQKQLVRGLTFGAVK 274
Cdd:COG0395  246 WGLLMAAAVIATLPVLILFLFLQRYFVRGLTAGAVK 281
 
Name Accession Description Interval E-value
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 2-274 1.04e-69

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 216.50  E-value: 1.04e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490580235   2 ARKTTTRAKIGFSIAAWIVALLLFFPILYAFLTSIKTEPEAIA-GFSLIPSG-TLENYVTVQTQRDYFKPFMNSVVLSLG 79
Cdd:COG0395    6 RRRRRRLGRILLYLLLILLALLFLFPLYWMVVTSFKPPAEIFSgPPSLLPSEfTLENYRAAFTDGPFGRYLLNSLIVAVV 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490580235  80 STIIALIIAIPAAWAMAFSPTKRTKDILMWMLSTKMMPAVAVLVPIYLIFRNAGLLDTRIGLTIMLTFINLPIVIWMLYT 159
Cdd:COG0395   86 STVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAFGLPFGIFLLRQ 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490580235 160 YFREIPGEILEAARMDGASLWNEIVHVLTPMAVPGIASTLLLNVILAWNESFWT-IRLTTTNAAPLTAFIASFSSPQGLF 238
Cdd:COG0395  166 FFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPlILLTSPDLRTLPVGLASFQGQYGTD 245

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 490580235 239 WAKLSAASMMAIAPILVIGWFSQKQLVRGLTFGAVK 274
Cdd:COG0395  246 WGLLMAAAVIATLPVLILFLFLQRYFVRGLTAGAVK 281
malG PRK10998
maltose ABC transporter permease MalG;
106-274 2.22e-18

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 82.83  E-value: 2.22e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490580235 106 ILMWMLSTKMMPAVAVLVPIYLIFRNAGLLDTRIGLTIMLTFI-----NLPIVIWMLYTYFREIPGEILEAARMDGASLW 180
Cdd:PRK10998 121 LLKGMLIFQMFPAVLSLVALYALFDRLGQYIPFIGLNTHGGVIfaylgGIALHVWTIKGYFETIDSSLEEAAALDGATPW 200

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490580235 181 NEIVHVLTPMAVPGIASTLLLNVILAWNE-SFWTIRLTTTNAAPLTAFIASFSSPQGLFWAKLSAASMMAIAPILVIGWF 259
Cdd:PRK10998 201 QAFRLVLLPLSVPILAVVFILSFIAAITEvPVASLLLRDVNSYTLAVGMQQYLNPQNYLWGDFAAAAVLSAIPITVVFLL 280

                        170
                 ....*....|....*
gi 490580235 260 SQKQLVRGLTFGAVK 274
Cdd:PRK10998 281 AQRWLVGGLTAGGVK 295
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 101-259 8.04e-09

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 53.84  E-value: 8.04e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490580235  101 KRTKDILMWMLST-KMMPAVAVLVPIYLIFRNAGLLDTRIGLTIMLTFINLPIVIWMLYTYFREIPGEILEAARMDGASL 179
Cdd:pfam00528  14 RRLDRLLRPLIDLlQALPSFVLAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASR 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490580235  180 WNEIVHVLTPMAVPGIASTLLLNVILAWNESFWTIRLTTTNAAPLTAFIASFSSPQGLFWAKLSAASMMAIAPILVIGWF 259
Cdd:pfam00528  94 WQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDIL 173
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 70-254 7.42e-08

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 51.13  E-value: 7.42e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490580235  70 FMNSVVLSLGSTIIALIIAIPAAWAMAFSPTKRTKDILMWMLSTKMMPAVAVLVPIYLIFRNAGLLDTRIGLT----IML 145
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGlpalILA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490580235 146 TFINLPIVIWMLYTYFREIPGEILEAARMDGASLWNEIVHVLTPMAVPGIASTLLLNVILAWNESFWTIRLTTTNAA-PL 224
Cdd:cd06261   81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPgPG 160

                        170       180       190
                 ....*....|....*....|....*....|
gi 490580235 225 TAFIASFSSPQGLFWAKLSAASMMAIAPIL 254
Cdd:cd06261  161 TGLLLIFAILFPGDLGVAAAVALILLLLSL 190
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 110-205 9.41e-03

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 37.35  E-value: 9.41e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490580235  110 MLSTKMMPAVAVlvpIYLiFRNAGLLDT---------RIGLTIMLTFINLPIVIWMLYTYFREIPGEILEAARMDGASLW 180
Cdd:TIGR03262 100 LLAPSLLPAISL---IYL-FGNQGLLKGllggfsiygFWGIVIGEVFYTFPHALMILVTALSLADGRLYEAARAMGASPW 175

                          90       100
                  ....*....|....*....|....*
gi 490580235  181 NEIVHVLTPMAVPGIASTLLLNVIL 205
Cdd:TIGR03262 176 RTFFTVTLPGAKYGLISAAFVVFTL 200
 
Name Accession Description Interval E-value
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 2-274 1.04e-69

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 216.50  E-value: 1.04e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490580235   2 ARKTTTRAKIGFSIAAWIVALLLFFPILYAFLTSIKTEPEAIA-GFSLIPSG-TLENYVTVQTQRDYFKPFMNSVVLSLG 79
Cdd:COG0395    6 RRRRRRLGRILLYLLLILLALLFLFPLYWMVVTSFKPPAEIFSgPPSLLPSEfTLENYRAAFTDGPFGRYLLNSLIVAVV 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490580235  80 STIIALIIAIPAAWAMAFSPTKRTKDILMWMLSTKMMPAVAVLVPIYLIFRNAGLLDTRIGLTIMLTFINLPIVIWMLYT 159
Cdd:COG0395   86 STVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAFGLPFGIFLLRQ 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490580235 160 YFREIPGEILEAARMDGASLWNEIVHVLTPMAVPGIASTLLLNVILAWNESFWT-IRLTTTNAAPLTAFIASFSSPQGLF 238
Cdd:COG0395  166 FFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPlILLTSPDLRTLPVGLASFQGQYGTD 245

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 490580235 239 WAKLSAASMMAIAPILVIGWFSQKQLVRGLTFGAVK 274
Cdd:COG0395  246 WGLLMAAAVIATLPVLILFLFLQRYFVRGLTAGAVK 281
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 1-274 2.52e-40

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 141.06  E-value: 2.52e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490580235   1 MARKTTTRAKIGFS-IAAWIVALLLFFPILYAFLTSIKTEPeAIAGFSLIPSG-TLENYVTVQTQRDYFKPFMNSVVLSL 78
Cdd:COG3833    5 KSRKRRRRLKLGLRhLVLIILAIIALFPILWVVSASFNPGG-SLYSSSLIPENfTLENYKKLFTETPFLRWFLNSLIVAV 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490580235  79 GSTIIALIIAIPAAWAmaFS----PTKRTkdILMWMLSTKMMPAVAVLVPIYLIFRNAGLLDTRIGLTIMLTFINLPIVI 154
Cdd:COG3833   84 VTAIISVFLAALAAYA--FSrfrfKGRKA--GLLALLLLQMFPAFLALVALYLLLSALGLLNTLLGLILVYLGGAIPFNT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490580235 155 WMLYTYFREIPGEILEAARMDGASLWNEIVHVLTPMAVPGIASTLLLNVILAWNE-SFWTIRLTTTNAAPLTAFIASFSS 233
Cdd:COG3833  160 WLMKGYFDTIPKELDEAAKIDGASHFQIFFRIILPLAKPILAVVALLSFIGPWNDfILASVLLRSPENYTLAVGLYSFVS 239

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 490580235 234 PQ-GLFWAKLSAASMMAIAPILVIGWFSQKQLVRGLTFGAVK 274
Cdd:COG3833  240 DQrNTNWGVFAAGAVLVAIPIVILFLFLQRYLVSGLTAGGVK 281
malG PRK10998
maltose ABC transporter permease MalG;
106-274 2.22e-18

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 82.83  E-value: 2.22e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490580235 106 ILMWMLSTKMMPAVAVLVPIYLIFRNAGLLDTRIGLTIMLTFI-----NLPIVIWMLYTYFREIPGEILEAARMDGASLW 180
Cdd:PRK10998 121 LLKGMLIFQMFPAVLSLVALYALFDRLGQYIPFIGLNTHGGVIfaylgGIALHVWTIKGYFETIDSSLEEAAALDGATPW 200

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490580235 181 NEIVHVLTPMAVPGIASTLLLNVILAWNE-SFWTIRLTTTNAAPLTAFIASFSSPQGLFWAKLSAASMMAIAPILVIGWF 259
Cdd:PRK10998 201 QAFRLVLLPLSVPILAVVFILSFIAAITEvPVASLLLRDVNSYTLAVGMQQYLNPQNYLWGDFAAAAVLSAIPITVVFLL 280

                        170
                 ....*....|....*
gi 490580235 260 SQKQLVRGLTFGAVK 274
Cdd:PRK10998 281 AQRWLVGGLTAGGVK 295
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 5-262 2.10e-14

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 70.91  E-value: 2.10e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490580235   5 TTTRAKIGFSIAAWIVALLLFFPILYAFLTSIKTEPeaiaGFSLIPSG-TLENYVTVQTQRDYFKPFMNSVVLSLGSTII 83
Cdd:COG1177    1 SSRLGRLLLRLFLALVLLFLYLPILVLVLYSFNDSW----FLTFPPEGfTLRWYAELFSDPRLLDALLNSLLIALLSTLL 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490580235  84 ALIIAIPAAWAMAFSPTKRTKDILMWMLSTKMMPAVAVLVPIYLIFRNAGLLDTRIGLTIMLTFINLPIVIWMLYTYFRE 163
Cdd:COG1177   77 ATVLGTPAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLWGLILAHVVFTLPFVVLVVLARLQG 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490580235 164 IPGEILEAARMDGASLWNEIVHVLTPMAVPGIASTLLLNVILAWNESFWTIRLTTTNAAPLTAFIasFSSPQGLFWAKLS 243
Cdd:COG1177  157 FDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGVTTLPVYI--YSMIRRGISPEIN 234

                        250
                 ....*....|....*....
gi 490580235 244 AASMMAIAPILVIGWFSQK 262
Cdd:COG1177  235 ALSTLLILLSLLLLLLAER 253
PRK10973 PRK10973
sn-glycerol-3-phosphate ABC transporter permease UgpE;
13-268 1.24e-11

sn-glycerol-3-phosphate ABC transporter permease UgpE;


Pssm-ID: 182875 [Multi-domain]  Cd Length: 281  Bit Score: 63.60  E-value: 1.24e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490580235  13 FSIAAWIVA-LLLFFPILYAFLTSIKTEPEAI-AGFSLIPSGTL-ENYVTVQTQ--RDYFKPF----MNSVVLSLGSTII 83
Cdd:PRK10973  11 FSHTMLILGiAVILFPLYVAFVAATLDKQAVFaVPMTLIPGTHLlENIANIWVNgvGNNSAPFgrmlLNSFVMAFSITVG 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490580235  84 ALIIAIPAAWAMAFSPTKrTKDILMWML-STKMMPAVAVLVPIYLIFRNAGLLDTRIGLTimLTFINLPIVIWMLYTYFR 162
Cdd:PRK10973  91 KITVSMLSAFAIVWFRFP-LRNLFFWMIfITLMLPVEVRIFPTVEVIANLKMLDSYAGLT--LPLMASATATFLFRQFFM 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490580235 163 EIPGEILEAARMDGASLWNEIVHVLTPMAVPGIASTLLLNVILAWNESFWTIRLTT-----TNAAPLTAFIASFSSPQGl 237
Cdd:PRK10973 168 TLPDELVEAARIDGASPMRFFWDIVLPLSKTNLAALFVITFIYGWNQYLWPLLIITdvslgTAVAGIKGMIATGEGTTE- 246

                        250       260       270
                 ....*....|....*....|....*....|.
gi 490580235 238 fWAKLSAASMMAIAPILVIGWFSQKQLVRGL 268
Cdd:PRK10973 247 -WNQVMAAMLLTLIPPVVIVLAMQRAFVRGL 276
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 1-206 1.06e-10

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 60.55  E-value: 1.06e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490580235   1 MARKTTTRAKIGFSIAAWIVALLLFF--PILYAFLTSIKTEPEaiaGFSLIPSGTLENYVTVQTQRDYFKPFMNSVVLSL 78
Cdd:COG1176    1 MSAALRRRLRPLLLLLPALLWLLLFFvlPLLLLLVYSFTTRDP---YGGVVPGFTLENYARLFTDPLYLKVLLRTLWIAL 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490580235  79 GSTIIALIIAIPAAWAMAFSPtKRTKDILMWMLstkMMP-AVAVLVPIY---LIFRNAGLLD-----------------T 137
Cdd:COG1176   78 LTTLICLLLGYPIAYFLARAP-PRWRNLLLLLV---ILPfWTSFLVRTYawiVLLGRNGLLNslllalglideplrllyT 153

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 490580235 138 RIGLTIMLTFINLPIVIWMLYTYFREIPGEILEAARMDGASLWNEIVHVLTPMAVPGIASTLLLNVILA 206
Cdd:COG1176  154 EFAVVIGLVYVYLPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPA 222
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
1-201 9.15e-10

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 58.63  E-value: 9.15e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490580235   1 MARKTTTRAKIGFSIAAWIVALLLFFPILYAFLTSIktepeaiagfslipSGTLENYVTVQTQRDYFKPFMNSVVLSLGS 80
Cdd:COG1178    1 MSTRPRRRPRLLLLLLALLLALLVLLPLLALLLRAF--------------TDGLANFWALLSDPYLWRALGNTLLLALLV 66

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490580235  81 TIIALIIAIPAAWAMAFS--PTKRTKDILMWMlsTKMMPAVAVLVPIYLIFRNAGLLDTRI---------------GLTI 143
Cdd:COG1178   67 TLLSLLLGVPLAWLLARTdfPGRRLLRWLLLL--PLALPPYVVALAWIALFGPNGLLNTLLralfgleppdiyglgGIIL 144

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 490580235 144 MLTFINLPIVIWMLYTYFREIPGEILEAARMDGASLWNEIVHVLTPMAVPGIASTLLL 201
Cdd:COG1178  145 VLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALL 202
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 101-259 8.04e-09

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 53.84  E-value: 8.04e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490580235  101 KRTKDILMWMLST-KMMPAVAVLVPIYLIFRNAGLLDTRIGLTIMLTFINLPIVIWMLYTYFREIPGEILEAARMDGASL 179
Cdd:pfam00528  14 RRLDRLLRPLIDLlQALPSFVLAILLVVIAILSILGHGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASR 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490580235  180 WNEIVHVLTPMAVPGIASTLLLNVILAWNESFWTIRLTTTNAAPLTAFIASFSSPQGLFWAKLSAASMMAIAPILVIGWF 259
Cdd:pfam00528  94 WQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDIL 173
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 70-254 7.42e-08

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 51.13  E-value: 7.42e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490580235  70 FMNSVVLSLGSTIIALIIAIPAAWAMAFSPTKRTKDILMWMLSTKMMPAVAVLVPIYLIFRNAGLLDTRIGLT----IML 145
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGlpalILA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490580235 146 TFINLPIVIWMLYTYFREIPGEILEAARMDGASLWNEIVHVLTPMAVPGIASTLLLNVILAWNESFWTIRLTTTNAA-PL 224
Cdd:cd06261   81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPgPG 160

                        170       180       190
                 ....*....|....*....|....*....|
gi 490580235 225 TAFIASFSSPQGLFWAKLSAASMMAIAPIL 254
Cdd:cd06261  161 TGLLLIFAILFPGDLGVAAAVALILLLLSL 190
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
8-209 1.58e-07

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 52.09  E-value: 1.58e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490580235   8 RAKIGFSIAAWIVALLLFFPILYAFLTSIKTepeaiagfSLIPSGTLENYVTVQTQRDYFKPFMNSVVLSLGSTIIALII 87
Cdd:COG1178  286 WRWLALALCLLLVLLGLLLPLLALLLWSLTK--------ALDDNLTLDNYRFVLLDPSLLRALLNSLLLALLAALLAVLL 357

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490580235  88 AIPAAWAMAFSPTKRTKDILMWMLSTKMMPAVAVLVPIYLIFRNAGLLDTRIGLTIML---TFINLPIVIWMLYTYFREI 164
Cdd:COG1178  358 ALLLAYLVRRRRGRLARLLDRLAMLPYAVPGIVLGLGLLLLFNRPLPLLLYGTLAILVlayVVRFLPFALRSLEAALAQI 437

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 490580235 165 PGEILEAARMDGASLWNEIVHVLTPMAVPGIASTLLLNVILAWNE 209
Cdd:COG1178  438 DPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKE 482
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 137-207 4.70e-07

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 49.75  E-value: 4.70e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 490580235 137 TRIGLTIMLTFINLPIVIWMLYTYFREIPGEILEAARMDGASLWNEIVHVLTPMAVPGIASTlllnVILAW 207
Cdd:COG0555  135 TPLGIVLAQTFVSLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTG----FALAF 201
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
139-208 2.43e-05

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 44.74  E-value: 2.43e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490580235 139 IGLTIMLTFINLPIVIWMLYTYFREIPGEILEAARMDGASLWNEIVHVLTPMAVPGIASTLLLNVILAWN 208
Cdd:COG1175  166 PAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQ 235
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 134-201 2.13e-04

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 41.98  E-value: 2.13e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 490580235 134 LLDTRIGLTIMLTFINLPIVIWMLYTYFREIPGEILEAARMDGASLWNEIVHVLTPMAVPGIASTLLL 201
Cdd:PRK09497 146 IMFTESAVIIGLVYILLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLL 213
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 114-207 2.21e-03

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 38.59  E-value: 2.21e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490580235 114 KMMPAVAVLVPIYLIFrnaGLLDTRIGLTIMLTFInlPIVIWMLYTYFREIPGEILEAARMDGASLWNEIVHVLTPMAVP 193
Cdd:COG0600  106 RPIPPLALAPLLILWF---GIGEASKIFVIFLGAF--FPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALP 180

                         90
                 ....*....|....
gi 490580235 194 GIASTLLLNVILAW 207
Cdd:COG0600  181 YIFTGLRIALGLAW 194
MetP COG2011
ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; ...
 161-204 7.65e-03

ABC-type methionine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 441614  Cd Length: 220  Bit Score: 36.96  E-value: 7.65e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 490580235 161 FREIPGEILEAARMDGASLWNEIVHVLTPMAVPGIASTLLLNVI 204
Cdd:COG2011  115 LREVDPGVIEAAQAMGASPWQIIFKVLLPEALPSLILGLTVTLI 158
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 110-205 9.41e-03

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 37.35  E-value: 9.41e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 490580235  110 MLSTKMMPAVAVlvpIYLiFRNAGLLDT---------RIGLTIMLTFINLPIVIWMLYTYFREIPGEILEAARMDGASLW 180
Cdd:TIGR03262 100 LLAPSLLPAISL---IYL-FGNQGLLKGllggfsiygFWGIVIGEVFYTFPHALMILVTALSLADGRLYEAARAMGASPW 175

                          90       100
                  ....*....|....*....|....*
gi 490580235  181 NEIVHVLTPMAVPGIASTLLLNVIL 205
Cdd:TIGR03262 176 RTFFTVTLPGAKYGLISAAFVVFTL 200
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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